def test_links_created_document_with_trial(self, conn, data_contribution):
processor.process({}, conn)
contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
document = conn['database']['trials_documents'].find_one(
document_id=contrib['document_id'],
trial_id=contrib['trial_id']
)
assert document is not None
def test_removes_document_if_contribution_is_unapproved(self, conn, data_contribution):
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
document = conn['database']['documents'].find_one(id=updated_contrib['document_id'])
updated_contrib.update({'approved': False})
conn['explorer']['data_contributions'].update(updated_contrib, ['id'])
processor.process({}, conn)
assert conn['database']['documents'].find_one(id=document['id']) is None
def test_ignores_contribution_with_invalid_trial_id(self, conn, data_contribution):
contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
contrib_attrs = {
'trial_id': 'e0f3ef3c-edba-11e6-ae32-e4b3181a2c8c',
}
contrib.update(contrib_attrs)
conn['explorer']['data_contributions'].update(contrib, ['id'])
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
assert updated_contrib['document_id'] is None
def test_ignores_archive_contribution(self, conn, data_contribution):
contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
contrib_attrs = {
'url': 'https://github.com/opentrials/processors/archive/master.zip',
}
contrib.update(contrib_attrs)
conn['explorer']['data_contributions'].update(contrib, ['id'])
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
assert updated_contrib['document_id'] is None
def test_ignores_contribution_with_invalid_url(self, conn, data_contribution):
contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
contrib_attrs = {
'url': 'invalid url',
}
contrib.update(contrib_attrs)
conn['explorer']['data_contributions'].update(contrib, ['id'])
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
assert updated_contrib['document_id'] is None
def test_updates_contribution_document_id_if_document_is_removed(self, conn, data_contribution):
processor.process({}, conn)
processed_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
processed_contrib.update({'approved': False})
conn['explorer']['data_contributions'].update(processed_contrib, ['id'])
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
assert processed_contrib['document_id'] is not None
assert updated_contrib['document_id'] is None
def test_updates_document_from_contribution(self, conn, data_contribution, document):
contrib_record = conn['explorer']['data_contributions'].find_one(id=data_contribution)
document_record = conn['database']['documents'].find_one(id=document)
contrib_record.update({
'document_id': document,
})
document_record.update({
'source_url': 'http://example.com',
'file_id': None,
})
conn['explorer']['data_contributions'].update(contrib_record, ['id'])
conn['database']['documents'].update(document_record, ['id'])
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
new_contrib_attrs = {
'url': 'http://www.example.net',
}
updated_contrib.update(new_contrib_attrs)
conn['explorer']['data_contributions'].update(updated_contrib, ['id'])
processor.process({}, conn)
updated_document = conn['database']['documents'].find_one(id=document)
assert updated_document['source_url'] == new_contrib_attrs['url']
def test_creates_document_from_contribution(self, conn, data_contribution):
processor.process({}, conn)
updated_contrib = conn['explorer']['data_contributions'].find_one(id=data_contribution)
assert conn['database']['documents'].find_one(id=updated_contrib['document_id']) is not None
