Example #1
0
 def __init__(self,
              nd=2,
              V_model=None,
              barycenters=None,
              flags_rigidbody=None):
     """
     TODO
     """
     assert(nd in [2, 3])
     self.nd = nd
     if self.nd == 2:
         sdInfo = {(0, 0): (np.array([0, 1, 2], dtype='i'),
                            np.array([0, 1], dtype='i'))}
     else:
         sdInfo = {(0, 0): (np.array([0, 1, 2, 3], dtype='i'),
                            np.array([0, 1, 2], dtype='i'))}
     TC_base.__init__(self,
                      nc=1,
                      variableNames=['am'],
                      diffusion={0: {0: {0: 'constant'}}},
                      potential={0: {0: 'u'}},
                      sparseDiffusionTensors=sdInfo,
                      useSparseDiffusion=True)
     self.flowModelIndex=V_model
     self.barycenters = barycenters
     if flags_rigidbody is not None:
         self.flags_rigidbody = flags_rigidbody
     else:
         Profiling.logEvent("Warning: flags_rigidbody was not set for"+
                            "AddedMass model, using a zero array of length"+
                            "1000, this sets all boundaries as fixed walls"+
                            "for the added mass model and might cause"+
                            " issues if the domain contains more flags")
         self.flags_rigidbody = np.zeros(1000, dtype='int32')
Example #2
0
 def __init__(self,
              nd=2,
              V_model=None,
              barycenters=None,
              flags_rigidbody=None):
     """
     TODO
     """
     assert(nd in [2, 3])
     self.nd = nd
     if self.nd == 2:
         sdInfo = {(0, 0): (np.array([0, 1, 2], dtype='i'),
                            np.array([0, 1], dtype='i'))}
     else:
         sdInfo = {(0, 0): (np.array([0, 1, 2, 3], dtype='i'),
                            np.array([0, 1, 2], dtype='i'))}
     TC_base.__init__(self,
                      nc=1,
                      variableNames=['am'],
                      diffusion={0: {0: {0: 'constant'}}},
                      potential={0: {0: 'u'}},
                      sparseDiffusionTensors=sdInfo,
                      useSparseDiffusion=True)
     self.flowModelIndex=V_model
     self.barycenters = barycenters
     if flags_rigidbody is not None:
         self.flags_rigidbody = flags_rigidbody
     else:
         Profiling.logEvent("Warning: flags_rigidbody was not set for"+
                            "AddedMass model, using a zero array of length"+
                            "1000, this sets all boundaries as fixed walls"+
                            "for the added mass model and might cause"+
                            " issues if the domain contains more flags")
         self.flags_rigidbody = np.zeros(1000, dtype='int32')
Example #3
0
 def initialize(self):
     if self.nd == 2:
         sdInfo = {
             (0, 0): (np.array([0, 1, 2],
                               dtype='i'), np.array([0, 1], dtype='i'))
         }
     else:
         sdInfo = {
             (0, 0): (np.array([0, 1, 2, 3],
                               dtype='i'), np.array([0, 1, 2], dtype='i'))
         }
     TC_base.__init__(self,
                      nc=1,
                      variableNames=['pInit'],
                      advection={0: {
                          0: 'constant'
                      }},
                      potential={0: {
                          0: 'u'
                      }},
                      diffusion={0: {
                          0: {
                              0: 'linear'
                          }
                      }},
                      sparseDiffusionTensors=sdInfo,
                      useSparseDiffusion=True)
Example #4
0
    def __init__(self,
                 modelIndex=None,
                 fluidModelIndex=None,
                 pressureIncrementModelIndex=None,
                 useRotationalForm=False):
        """Construct a coefficients object

        :param pressureIncrementModelIndex: The index into the model list
        """
        TC_base.__init__(
            self,
            nc=1,
            variableNames=['p'],
            reaction={0: {
                0: 'linear'
            }},  # = p - p_last - phi
            advection={0: {
                0: 'constant'
            }})  # div  (\mu velocity)
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
        self.pressureIncrementModelIndex = pressureIncrementModelIndex
        if pressureIncrementModelIndex is None:
            assert useRotationalForm == False, "The rotational form must be de-activated if there is no model for press increment"
        self.useRotationalForm = useRotationalForm
Example #5
0
    def __init__(self,
                 rho_f_min=998.0,
                 rho_s_min=998.0,
                 nd=2,
                 modelIndex = None,
                 fluidModelIndex = None):
        """Construct a coefficients object

        :param modelIndex: This model's index into the model list
        :param fluidModelIndex: The fluid momentum model's index
        """
        assert(nd in [2,3])
        self.nd = nd
        if self.nd == 2:
            sdInfo    = {(0,0):(np.array([0,1,2],dtype='i'),
                                np.array([0,1],dtype='i'))}
        else:
            sdInfo    = {(0,0):(np.array([0,1,2,3],dtype='i'),
                                np.array([0,1,2],dtype='i'))}
        TC_base.__init__(self,
                         nc = 1,
                         variableNames = ['pInc'],
                         diffusion = {0:{0:{0:'constant'}}},
                         potential = {0:{0:'u'}},
                         advection = {0:{0:'constant'}},
                         sparseDiffusionTensors=sdInfo,
                         useSparseDiffusion = True)
        self.rho_f_min = rho_f_min
        self.rho_s_min = rho_s_min
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
Example #6
0
    def __init__(self,
                 modelIndex=None,
                 fluidModelIndex=None,
                 pressureIncrementModelIndex=None,
                 useRotationalForm=False,
                 initialize=True):
        """Construct a coefficients object

        :param pressureIncrementModelIndex: The index into the model list
        """
        TC_base.__init__(
            self,
            nc=1,
            variableNames=['p'],
            reaction={0: {
                0: 'linear'
            }},  # = p - p_last - phi
            advection={0: {
                0: 'constant'
            }})  # div  (\mu velocity)
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
        self.pressureIncrementModelIndex = pressureIncrementModelIndex
        self.useRotationalForm = useRotationalForm
        if initialize:
            self.initialize()
Example #7
0
    def __init__(self,
                 rho_f_min=998.0,
                 rho_s_min=998.0,
                 nd=2,
                 VOS_model=0,
                 VOF_model=1,
                 modelIndex=None,
                 fluidModelIndex=None,
                 sedModelIndex=None,
                 fixNullSpace=False,
                 INTEGRATE_BY_PARTS_DIV_U=True,
                 nullSpace="NoNullSpace"):
        """Construct a coefficients object

        :param modelIndex: This model's index into the model list
        :param fluidModelIndex: The fluid momentum model's index
        """
        """
        TODO
        """
        self.nullSpace = nullSpace
        self.fixNullSpace = fixNullSpace
        self.INTEGRATE_BY_PARTS_DIV_U = INTEGRATE_BY_PARTS_DIV_U
        self.VOS_model = VOS_model
        self.VOF_model = VOF_model
        assert (nd in [2, 3])
        self.nd = nd
        if self.nd == 2:
            sdInfo = {
                (0, 0): (np.array([0, 1, 2],
                                  dtype='i'), np.array([0, 1], dtype='i'))
            }
        else:
            sdInfo = {
                (0, 0): (np.array([0, 1, 2, 3],
                                  dtype='i'), np.array([0, 1, 2], dtype='i'))
            }
        TC_base.__init__(self,
                         nc=1,
                         variableNames=['pInc'],
                         diffusion={0: {
                             0: {
                                 0: 'constant'
                             }
                         }},
                         potential={0: {
                             0: 'u'
                         }},
                         advection={0: {
                             0: 'constant'
                         }},
                         sparseDiffusionTensors=sdInfo,
                         useSparseDiffusion=True)
        self.rho_f_min = rho_f_min
        self.rho_s_min = rho_s_min
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
        self.sedModelIndex = sedModelIndex
Example #8
0
 def __init__(self,
              aOfX,
              fOfX,
              velocity=None,
              nc=1,
              nd=2,
              l2proj=None,
              timeVaryingCoefficients=False,
              forceStrongDirichlet=False,
              useMetrics=0.0,
              sc_uref=1.0,
              sc_beta=1.0):
     self.useMetrics = useMetrics
     self.forceStrongDirichlet = forceStrongDirichlet
     self.aOfX = aOfX
     self.fOfX = fOfX
     self.velocity = velocity
     self.nd = nd
     self.l2proj = l2proj
     self.timeVaryingCoefficients = timeVaryingCoefficients
     self.sc_uref = sc_uref
     self.sc_beta = sc_beta
     mass = {}
     advection = {}
     diffusion = {}
     potential = {}
     reaction = {}
     hamiltonian = {}
     for i in range(nc):
         diffusion[i] = {i: {i: 'constant'}}
         reaction[i] = {i: 'constant'}
         advection[i] = {i: 'linear'}  #now include for gravity type terms
         potential[i] = {i: 'u'}
     #end i
     sdInfo = {
         (0, 0): (numpy.arange(start=0,
                               stop=self.nd**2 + 1,
                               step=self.nd,
                               dtype='i'),
                  numpy.array([range(self.nd) for row in range(self.nd)],
                              dtype='i'))
     }
     TC_base.__init__(self,
                      nc,
                      mass,
                      advection,
                      diffusion,
                      potential,
                      reaction,
                      hamiltonian,
                      variableNames=['u'],
                      sparseDiffusionTensors=sdInfo,
                      useSparseDiffusion=True,
                      movingDomain=False)
Example #9
0
    def __init__(self,
                 useMetrics=1.0,
                 epsFactHeaviside=3.0,
                 epsFactDirac=3.0,
                 epsFactDiffusion=1.0,
                 nd=2,
                 modelIndex=None,
                 fluidModelIndex=None,
                 pressureModelIndex=None,
                 useRotationalForm=False):
        """Construct a coefficients object

        :param pressureIncrementModelIndex: The index into the model list
        """
        self.nd = nd
        if self.nd == 2:
            sdInfo = {
                (0, 0): (np.array([0, 1, 2],
                                  dtype='i'), np.array([0, 1], dtype='i'))
            }
        else:
            sdInfo = {
                (0, 0): (np.array([0, 1, 2, 3],
                                  dtype='i'), np.array([0, 1, 2], dtype='i'))
            }
        TC_base.__init__(self,
                         nc=1,
                         variableNames=['pInit'],
                         advection={0: {
                             0: 'constant'
                         }},
                         potential={0: {
                             0: 'u'
                         }},
                         diffusion={0: {
                             0: {
                                 0: 'linear'
                             }
                         }},
                         sparseDiffusionTensors=sdInfo,
                         useSparseDiffusion=True)
        self.useMetrics = useMetrics
        self.modelIndex = modelIndex
        self.epsFactHeaviside = epsFactHeaviside
        self.epsFactDirac = epsFactDirac
        self.epsFactDiffusion = epsFactDiffusion
        self.fluidModelIndex = fluidModelIndex
        self.pressureModelIndex = pressureModelIndex
        self.useRotationalForm = useRotationalForm
Example #10
0
    def __init__(self,
                 modelIndex=None,
                 fluidModelIndex=None,
                 pressureIncrementModelIndex=None,
                 useRotationalForm=False):
        """Construct a coefficients object

        :param pressureIncrementModelIndex: The index into the model list
        """
        TC_base.__init__(self,
                         nc=1,
                         variableNames=['p'],
                         reaction={0: {0: 'linear'}},  # = p - p_last - phi
                         advection={0: {0: 'constant'}})  # div  (\mu velocity)
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
        self.pressureIncrementModelIndex = pressureIncrementModelIndex
        if pressureIncrementModelIndex is None:
            assert useRotationalForm == False, "The rotational form must be de-activated if there is no model for press increment"
        self.useRotationalForm = useRotationalForm
Example #11
0
    def __init__(self,
                 rho_f_min=998.0,
                 rho_s_min=998.0,
                 nd=2,
                 VOS_model=0,
                 VOF_model=1,
                 modelIndex = None,
                 fluidModelIndex = None, 
                 sedModelIndex = None, 
                 fixNullSpace=False,
                 INTEGRATE_BY_PARTS_DIV_U=True):
        """Construct a coefficients object

        :param modelIndex: This model's index into the model list
        :param fluidModelIndex: The fluid momentum model's index
        """
        self.fixNullSpace=fixNullSpace
        self.INTEGRATE_BY_PARTS_DIV_U=INTEGRATE_BY_PARTS_DIV_U
        self.VOS_model=VOS_model
        self.VOF_model=VOF_model
        assert(nd in [2,3])        
        self.nd = nd
        if self.nd == 2:
            sdInfo = {(0, 0): (np.array([0, 1, 2], dtype='i'),
                               np.array([0, 1], dtype='i'))}
        else:
            sdInfo = {(0, 0): (np.array([0, 1, 2, 3], dtype='i'),
                               np.array([0, 1, 2], dtype='i'))}
        TC_base.__init__(self,
                         nc=1,
                         variableNames=['pInc'],
                         diffusion={0: {0: {0: 'constant'}}},
                         potential={0: {0: 'u'}},
                         advection={0: {0: 'constant'}},
                         sparseDiffusionTensors=sdInfo,
                         useSparseDiffusion=True)
        self.rho_f_min = rho_f_min
        self.rho_s_min = rho_s_min
        self.modelIndex = modelIndex
        self.fluidModelIndex = fluidModelIndex
        self.sedModelIndex = sedModelIndex
Example #12
0
    def __init__(self,
                 useMetrics=1.0,
                 epsFactHeaviside=3.0,
                 epsFactDirac=3.0,
                 epsFactDiffusion=1.0,
                 nd=2,
                 modelIndex=None,
                 fluidModelIndex=None,
                 pressureModelIndex=None,
                 useRotationalForm=False):
        """Construct a coefficients object

        :param pressureIncrementModelIndex: The index into the model list
        """
        self.nd = nd
        if self.nd == 2:
            sdInfo = {(0, 0): (np.array([0, 1, 2], dtype='i'),
                               np.array([0, 1], dtype='i'))}
        else:
            sdInfo = {(0, 0): (np.array([0, 1, 2, 3], dtype='i'),
                               np.array([0, 1, 2], dtype='i'))}
        TC_base.__init__(self,
                         nc=1,
                         variableNames=['pInit'],
                         advection={0: {0: 'constant'}},
                         potential={0: {0: 'u'}},
                         diffusion={0: {0: {0: 'linear'}}},
                         sparseDiffusionTensors=sdInfo,
                         useSparseDiffusion = True)
        self.useMetrics = useMetrics
        self.modelIndex = modelIndex
        self.epsFactHeaviside = epsFactHeaviside
        self.epsFactDirac = epsFactDirac
        self.epsFactDiffusion = epsFactDiffusion
        self.fluidModelIndex = fluidModelIndex
        self.pressureModelIndex = pressureModelIndex
        self.useRotationalForm = useRotationalForm