def openVolume(self):
'''Open Volume, send through the socket, create first projection and visualize it and create parallel thread for incoming events'''
self.image = xmipp.Image(self.file)
xdim, ydim, zdim, n = self.image.getDimensions()
Z = getImageData(self.image)
self.image.convert2DataType(xmipp.DT_DOUBLE)
from multiprocessing.connection import Client
address = (self.address, self.port)
self.conn = Client(address, authkey=self.authkey)
self.conn.send(Z)
self.projection = self.image.projectVolumeDouble(0,0,0)
self.process_check = True
self.process_thread = threading.Thread(target=self.communication)
self.process_thread.start()
from protlib_gui_figure import ImageWindow
self.projectionImage = ImageWindow(image=self.projection,label="Projection")
self.projectionImage.root.bind('<<NewProjection>>', self.update)
#self.update()
self.projectionImage.show()
class openVolumesWithParameters:
def __init__(self, inputFileName):
'''Initialize variables and call openVolume'''
self.projectionImage = None
self.image = None
self.file = inputFileName
self.address = ''
self.port = 6000
self.authkey = 'test'
#self.isChange = True
self.openVolume()
def openVolume(self):
'''Open Volume, send through the socket, create first projection and visualize it and create parallel thread for incoming events'''
self.image = xmipp.Image(self.file)
xdim, ydim, zdim, n = self.image.getDimensions()
Z = getImageData(self.image)
self.image.convert2DataType(xmipp.DT_DOUBLE)
from multiprocessing.connection import Client
address = (self.address, self.port)
self.conn = Client(address, authkey=self.authkey)
self.conn.send(Z)
self.projection = self.image.projectVolumeDouble(0,0,0)
self.process_check = True
self.process_thread = threading.Thread(target=self.communication)
self.process_thread.start()
from protlib_gui_figure import ImageWindow
self.projectionImage = ImageWindow(image=self.projection,label="Projection")
self.projectionImage.root.bind('<<NewProjection>>', self.update)
#self.update()
self.projectionImage.show()
def communication(self):
'''Function executed by parallel thread
Wait for any data comming from the socket and calculate projection'''
keep_running = True
while keep_running:
msg = self.conn.recv()
msg2= pickle.loads(msg)
b=array(msg2)
rot1,tilt1,psi1 = xmipp.Euler_matrix2angles(b)
# print "rot1,tilt1,psi1"
# print rot1,tilt1,psi1
self.projection = self.image.projectVolumeDouble(rot1,tilt1,psi1)
#self.isChange = True
self.projectionImage.root.event_generate('<<NewProjection>>', when='tail')
def update(self, event):
'''Update projection in viewer when an event is detected'''
#print event
#if self.isChange:
#self.projection = self.image.projectVolumeDouble(rot, tilt, psi)
Z = flipud(getImageData(self.projection))
self.projectionImage.updateData(Z)
