Python query_protein Examples

Example #1

def test_query_protein_deprecated():
    g = uniprot_client.query_protein('Q8NHX1')
    assert g is not None
    gene_name = uniprot_client.get_gene_name('Q8NHX1')
    assert gene_name == 'MAPK3'
    gene_name = uniprot_client.get_gene_name('Q8NHX1', web_fallback=False)
    assert gene_name == 'MAPK3'

Example #2

def test_query_protein_exists():
    g = uniprot_client.query_protein('P00533')
    assert g is not None

Example #3

def test_query_protein_nonexist():
    g = uniprot_client.query_protein('XXXX')
    assert g is None

Example #4

File: test_uniprot_client.py Project: indralab/protmapper

def test_query_protein_nonexist():
    tree = uniprot_client.query_protein('XXXX')
    assert tree is None