Example #1
0
    def __init__(self, fil_filenm, box):
        self.fil_filenm = fil_filenm
        self.basefilenm = fil_filenm.rstrip(".sig")
        #self.beam = int(self.basefilenm[-1])
        self.beam = int(self.basefilenm)
        filhdr, self.hdrlen = sigproc.read_header(fil_filenm)
        self.orig_filenm = filhdr['rawdatafile']
        self.MJD = filhdr['tstart']
        self.nchans = filhdr['nchans']
        self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
        self.ra_string = psr_utils.coord_to_string(\
            *psr_utils.rad_to_hms(self.ra_rad))
        self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
        self.dec_string = psr_utils.coord_to_string(\
            *psr_utils.rad_to_dms(self.dec_rad))
        self.az = filhdr['az_start']
        self.el = 90.0-filhdr['za_start']
        self.BW = abs(filhdr['foff']) * filhdr['nchans']
        self.dt = filhdr['tsamp']
        self.orig_N = sigproc.samples_per_file(fil_filenm, filhdr, self.hdrlen)
        self.orig_T = self.orig_N * self.dt
        self.N = choose_N(self.orig_N)
        #self.N = 2097152 
        self.T = self.N * self.dt
        # Update the RA and DEC from the database file if required
        #newposn = read_db_posn(self.orig_filenm, self.beam)
        #if newposn is not None:
        #    self.ra_string, self.dec_string = newposn
            # ... and use them to update the filterbank file
        #    fix_fil_posn(fil_filenm, self.hdrlen,
        #                 self.ra_string, self.dec_string)
        # Determine the average barycentric velocity of the observation
        #self.baryv = get_baryv(self.ra_string, self.dec_string,
        #                       self.MJD, self.T, obs="NC")
        # Where to dump all the results
        # Directory structure is under the base_output_directory
        # according to base/MJD/filenmbase/beam
        self.outputdir = os.path.join(base_output_directory,box,
                                      self.basefilenm)
        # Figure out which host we are processing on
        self.hostname = socket.gethostname()
        # The fraction of the data recommended to be masked by rfifind
        self.masked_fraction = 0.0
        # Initialize our timers
        self.rfifind_time = 0.0
        self.downsample_time = 0.0
        self.subbanding_time = 0.0
        self.dedispersing_time = 0.0
        self.FFT_time = 0.0
        self.lo_accelsearch_time = 0.0
        self.hi_accelsearch_time = 0.0
        self.singlepulse_time = 0.0
        self.sifting_time = 0.0
        self.folding_time = 0.0
        self.total_time = 0.0
        # Inialize some candidate counters
        self.num_sifted_cands = 0
        self.num_folded_cands = 0
        self.num_single_cands = 0
	self.nb_sp = 0
Example #2
0
def main():
    observations = [pfd_snr.Observation(pfdfn) for pfdfn in sys.argv[1:]]
    data = np.array([(o.snr, o.ra, o.dec) for o in observations])
    if debug:
        print "data:"
        for z in data:
            print "\tSNR:", z[0], "RA:", z[1], "Dec:", z[2]
    # Init guess is max SNR, weighted avg of RA, weighted avg of Dec
    data_T = data.transpose()
    init_params = (data_T[0].max(), (data_T[0]*data_T[1]).sum()/data_T[0].sum(), \
                        (data_T[0]*data_T[2]).sum()/data_T[0].sum())
    if debug:
        print "initial parameters:"
        print "\tSNR:", init_params[0], "RA:", init_params[1], "Dec:", init_params[2]
    global beam_profile
    # Use gain = 1
    beam_profile = estimate_snr.EstimateFWHMSNR(3.35/2.0, 1420, 100, 2, 1, 24)
    result = fit(init_params, data) 
    if debug:
        print "results:"
        print "\tSNR:", result[0], "RA:", result[1], "Dec:", result[2]
    psrsnr, psrra, psrdec = result
    snrs, ras, decs = data.transpose()
    plt.figure(figsize=(8.5,11))
    plt.subplot(211)
    plt.title("Fitting gridding observations to determine pulsar position")
    plt.scatter((ras-psrra)*60/15.0, (decs-psrdec)*60, c=snrs, marker='o', label='_nolegend_')
    plt.spring()
    cbar = plt.colorbar()
    cbar.set_label(r"$SNR$")
    plt.scatter(np.array([0]), np.array([0]), s=100, c='k', marker=(5,1,0), \
                    label='Best PSR posn')
    if debug:
        plt.scatter(np.array([init_params[1]-psrra])*60/15.0, \
                        np.array([init_params[2]-psrdec])*60, \
                            s=100, c='w', marker=(5,1,0), label='Init PSR posn')
    plt.legend(loc='best')
    plt.xlabel("RA (sec) + %02.0f:%02.0f:%07.4f" % psr_utils.rad_to_hms(psrra/60.0*psr_utils.DEGTORAD))
    plt.ylabel("Dec (arcsec) + %02.0f:%02.0f:%07.4f" % psr_utils.rad_to_dms(psrdec/60.0*psr_utils.DEGTORAD))
   
    obsangseps = np.zeros(len(snrs))
    for ii in range(len(snrs)):
        obsangseps[ii] = angsep_arcmin(psrra, psrdec, ras[ii], decs[ii])
    maxangsep = obsangseps.max()
    angseps = np.linspace(0,maxangsep*1.1, 1000)
    plt.subplot(212)
    plt.plot(angseps, psrsnr*beam_profile.gain_at_angular_offset(angseps), 'k', zorder=-1)
    plt.scatter(obsangseps, snrs, c=snrs, zorder=1)
    plt.xlabel("Angular separation (arcmin)")
    plt.ylabel("SNR")
    plt.savefig('gridding.tmp.ps', papertype='letter', orientation='portrait')
    cid_keypress = plt.gcf().canvas.mpl_connect('key_press_event', \
                                                    keypress)
    plt.show()
Example #3
0
 def __init__(self, fil_filenm):
     self.fil_filenm = fil_filenm
     self.basefilenm = fil_filenm[:fil_filenm.find(".fil")]
     filhdr, hdrlen = sigproc.read_header(fil_filenm)
     self.MJD = filhdr['tstart']
     self.nchans = filhdr['nchans']
     self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
     self.ra_string = pu.coord_to_string(*pu.rad_to_hms(self.ra_rad))
     self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
     self.dec_string = pu.coord_to_string(*pu.rad_to_dms(self.dec_rad))
     self.str_coords = "J" + "".join(self.ra_string.split(":")[:2])
     if self.dec_rad >= 0.0: self.str_coords += "+"
     self.str_coords += "".join(self.dec_string.split(":")[:2])
     self.az = filhdr['az_start']
     self.el = 90.0 - filhdr['za_start']
     fillen = os.stat(fil_filenm)[6]
     self.raw_N = (fillen - hdrlen) / (filhdr['nbits'] /
                                       8) / filhdr['nchans']
     self.dt = filhdr['tsamp']
     self.raw_T = self.raw_N * self.dt
     self.N = orig_N
     self.T = self.N * self.dt
     # Determine the average barycentric velocity of the observation
     self.baryv = get_baryv(self.ra_string,
                            self.dec_string,
                            self.MJD,
                            self.T,
                            obs="GB")
     # Where to dump all the results
     # Directory structure is under the base_output_directory
     # according to base/MJD/filenmbase/beam
     self.outputdir = os.path.join(base_output_dir, str(int(self.MJD)),
                                   self.str_coords)
     # Figure out which host we are processing on
     self.hostname = socket.gethostname()
     # The fraction of the data recommended to be masked by rfifind
     self.masked_fraction = 0.0
     # Initialize our timers
     self.rfifind_time = 0.0
     self.downsample_time = 0.0
     self.dedispersing_time = 0.0
     self.FFT_time = 0.0
     self.lo_accelsearch_time = 0.0
     self.hi_accelsearch_time = 0.0
     self.singlepulse_time = 0.0
     self.sifting_time = 0.0
     self.folding_time = 0.0
     self.total_time = 0.0
     # Inialize some candidate counters
     self.num_sifted_cands = 0
     self.num_folded_cands = 0
     self.num_single_cands = 0
 def __init__(self, fil_filenm):
     self.fil_filenm = fil_filenm
     self.basefilenm = fil_filenm[:fil_filenm.find(".fil")]
     filhdr, hdrlen = sigproc.read_header(fil_filenm)
     self.MJD = filhdr['tstart']
     self.nchans = filhdr['nchans']
     self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
     self.ra_string = pu.coord_to_string(*pu.rad_to_hms(self.ra_rad))
     self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
     self.dec_string = pu.coord_to_string(*pu.rad_to_dms(self.dec_rad))
     self.str_coords = "J"+"".join(self.ra_string.split(":")[:2])
     if self.dec_rad >= 0.0:  self.str_coords += "+"
     self.str_coords += "".join(self.dec_string.split(":")[:2])
     self.az = filhdr['az_start']
     self.el = 90.0-filhdr['za_start']
     fillen = os.stat(fil_filenm)[6]
     self.raw_N = (fillen-hdrlen)/(filhdr['nbits']/8)/filhdr['nchans']
     self.dt = filhdr['tsamp']
     self.raw_T = self.raw_N * self.dt
     self.N = orig_N
     self.T = self.N * self.dt
     # Determine the average barycentric velocity of the observation
     self.baryv = get_baryv(self.ra_string, self.dec_string,
                            self.MJD, self.T, obs="GB")
     # Where to dump all the results
     # Directory structure is under the base_output_directory
     # according to base/MJD/filenmbase/beam
     self.outputdir = os.path.join(base_output_dir,
                                   str(int(self.MJD)),
                                   self.str_coords)
     # Figure out which host we are processing on
     self.hostname = socket.gethostname()
     # The fraction of the data recommended to be masked by rfifind
     self.masked_fraction = 0.0
     # Initialize our timers
     self.rfifind_time = 0.0
     self.downsample_time = 0.0
     self.dedispersing_time = 0.0
     self.FFT_time = 0.0
     self.lo_accelsearch_time = 0.0
     self.hi_accelsearch_time = 0.0
     self.singlepulse_time = 0.0
     self.sifting_time = 0.0
     self.folding_time = 0.0
     self.total_time = 0.0
     # Inialize some candidate counters
     self.num_sifted_cands = 0
     self.num_folded_cands = 0
     self.num_single_cands = 0
Example #5
0
 def __init__(self, parfilenm):
     self.FILE = parfilenm
     pf = open(parfilenm)
     for line in pf.readlines():
         # Skip comments
         if line[0] == '#':
             continue
         # Convert any 'D-' or 'D+' to 'E-' or 'E+'
         line = line.replace("D-", "E-")
         line = line.replace("D+", "E+")
         splitline = line.split()
         # Skip blank lines
         if len(splitline) == 0:
             continue
         key = splitline[0]
         if key in str_keys:
             setattr(self, key, splitline[1])
         elif key in float_keys:
             try:
                 setattr(self, key, float(splitline[1]))
             except ValueError:
                 pass
         if len(
                 splitline
         ) == 3:  # Some parfiles don't have flags, but do have errors
             if splitline[2] not in ['0', '1']:
                 setattr(self, key + '_ERR', float(splitline[2]))
         if len(splitline) == 4:
             setattr(self, key + '_ERR', float(splitline[3]))
     # Deal with Ecliptic coords
     if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
         setattr(self, 'ELAT', self.BETA)
         setattr(self, 'ELONG', self.LAMBDA)
     if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
                                     self.ELAT * pu.DEGTORAD, epoch)
         rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
         dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
         setattr(self, 'RAJ', rstr)
         setattr(self, 'DECJ', dstr)
     if hasattr(self, 'RAJ'):
         setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
     if hasattr(self, 'DECJ'):
         setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
     # Compute the Galactic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
         setattr(self, 'GLONG', l * pu.RADTODEG)
         setattr(self, 'GLAT', b * pu.RADTODEG)
     # Compute the Ecliptic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
         setattr(self, 'ELONG', elon * pu.RADTODEG)
         setattr(self, 'ELAT', elat * pu.RADTODEG)
     if hasattr(self, 'P'):
         setattr(self, 'P0', self.P)
     if hasattr(self, 'P0'):
         setattr(self, 'F0', 1.0 / self.P0)
     if hasattr(self, 'F0'):
         setattr(self, 'P0', 1.0 / self.F0)
     if hasattr(self, 'FB0'):
         setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
     if hasattr(self, 'P0_ERR'):
         if hasattr(self, 'P1_ERR'):
             f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
                                            self.P1_ERR)
             setattr(self, 'F0_ERR', ferr)
             setattr(self, 'F1', fd)
             setattr(self, 'F1_ERR', fderr)
         else:
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
             setattr(self, 'F1', fd)
     if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
         p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
                                        self.F1_ERR)
         setattr(self, 'P0_ERR', perr)
         setattr(self, 'P1', pd)
         setattr(self, 'P1_ERR', pderr)
     elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
         setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
     if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
         ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
         omega = math.atan2(self.EPS1, self.EPS2)
         setattr(self, 'E', ecc)
         setattr(self, 'OM', omega * pu.RADTODEG)
         setattr(self, 'T0', self.TASC + self.PB * omega / pu.TWOPI)
     if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
            (hasattr(self, 'E') or hasattr(self, 'ECC')):
         setattr(self, 'E', 0.0)
     if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
         setattr(self, 'TASC', self.T0 - self.PB * self.OM / 360.0)
     pf.close()
Example #6
0
 def __str__(self):
     out = ''
     if (self.name):
         out = out + "\nPulsar  B%s  (J%s)\n" % \
               (self.name, self.jname)
     else:
         out = out + "\nPulsar J%s\n" % (self.jname)
     if (self.alias):
         out = out + "                 Alias = %s\n" % self.alias
     if (self.assoc is not None):
         out = out + "           Association = %s\n" % self.assoc
     if (self.type is not None):
         out = out + "                  Type = %s\n" % self.type
     (h, m, s) = psr_utils.rad_to_hms(self.ra)
     serr = psr_utils.RADTOSEC * self.raerr
     out = out + "            RA (J2000) = %s +/- %.4fs\n" % \
           (psr_utils.coord_to_string(h, m, s), serr)
     (d, m, s) = psr_utils.rad_to_dms(self.dec)
     serr = psr_utils.RADTOARCSEC * self.decerr
     out = out + "           DEC (J2000) = %s +/- %.4f\"\n" % \
           (psr_utils.coord_to_string(d, m, s), serr)
     out = out + "                (l, b) = (%.2f, %.2f)\n" % \
           (self.l, self.b)
     out = out + "          DM (cm-3 pc) = %.8g +/- %.5g\n" % \
           (self.dm, self.dmerr)
     if (self.s400 is not None):
         out = out + "        S_400MHz (mJy) = %.3g +/- %.2g\n" % \
               (self.s400, self.s400err)
     if (self.s1400 is not None):
         out = out + "       S_1400MHz (mJy) = %.3g +/- %.2g\n" % \
               (self.s1400, self.s1400err)
     if (self.dist is not None):
         out = out + "        Distance (kpc) = %.3g\n" % self.dist
     out = out + "            Period (s) = %.15g +/- %.15g\n" % \
           (self.p, self.perr)
     out = out + "           P-dot (s/s) = %.8g +/- %.8g\n" % \
           (self.pd, self.pderr)
     out = out + "           Epoch (MJD) = %.10g\n" % self.pepoch
     if (self.binary):
         out = out + "          P_binary (s) = %.10g +/- %.10g\n" % \
               (self.pb*86400.0, self.pberr*86400.0)
         out = out + "          P_binary (d) = %.10g +/- %.10g\n" % \
               (self.pb, self.pberr)
         if self.x is not None:
             out = out + "        a*sin(i)/c (s) = %.8g +/- %.8g\n" % \
                   (self.x, self.xerr)
         if self.e is not None:
             out = out + "          Eccentricity = %.8g +/- %.8g\n" % \
                   (self.e, self.eerr)
             if (self.e > 0.0):
                 if self.w is not None:
                     out = out + "    Long of Peri (deg) = %.10g +/- %.10g\n" % \
                           (self.w, self.werr)
                 if self.To is not None:
                     out = out + "    Time of Peri (MJD) = %.12g +/- %.12g\n" % \
                           (self.To, self.Toerr)
         else:
             if self.To is not None:
                 out = out + "  T of Ascd Node (MJD) = %.12g +/- %.12g\n" % \
                       (self.To, self.Toerr)
     return out
Example #7
0
 def __init__(self, parfilenm):
     self.FILE = parfilenm
     pf = open(parfilenm)
     for line in pf.readlines():
         # Skip comments
         if line[0] == "#":
             continue
         # Convert any 'D-' or 'D+' to 'E-' or 'E+'
         line = line.replace("D-", "E-")
         line = line.replace("D+", "E+")
         splitline = line.split()
         # Skip blank lines
         if len(splitline) == 0:
             continue
         key = splitline[0]
         if key in str_keys:
             setattr(self, key, splitline[1])
         elif key in float_keys:
             try:
                 setattr(self, key, float(splitline[1]))
             except ValueError:
                 pass
         if len(splitline) == 3:  # Some parfiles don't have flags, but do have errors
             if splitline[2] not in ["0", "1"]:
                 setattr(self, key + "_ERR", float(splitline[2]))
         if len(splitline) == 4:
             setattr(self, key + "_ERR", float(splitline[3]))
     # Deal with Ecliptic coords
     if hasattr(self, "BETA") and hasattr(self, "LAMBDA"):
         setattr(self, "ELAT", self.BETA)
         setattr(self, "ELONG", self.LAMBDA)
     if slalib and hasattr(self, "ELAT") and hasattr(self, "ELONG"):
         if hasattr(self, "POSEPOCH"):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD, self.ELAT * pu.DEGTORAD, epoch)
         rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
         dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
         setattr(self, "RAJ", rstr)
         setattr(self, "DECJ", dstr)
     if hasattr(self, "RAJ"):
         setattr(self, "RA_RAD", pu.ra_to_rad(self.RAJ))
     if hasattr(self, "DECJ"):
         setattr(self, "DEC_RAD", pu.dec_to_rad(self.DECJ))
     # Compute the Galactic coords
     if slalib and hasattr(self, "RA_RAD") and hasattr(self, "DEC_RAD"):
         l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
         setattr(self, "GLONG", l * pu.RADTODEG)
         setattr(self, "GLAT", b * pu.RADTODEG)
     # Compute the Ecliptic coords
     if slalib and hasattr(self, "RA_RAD") and hasattr(self, "DEC_RAD"):
         if hasattr(self, "POSEPOCH"):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
         setattr(self, "ELONG", elon * pu.RADTODEG)
         setattr(self, "ELAT", elat * pu.RADTODEG)
     if hasattr(self, "P"):
         setattr(self, "P0", self.P)
     if hasattr(self, "P0"):
         setattr(self, "F0", 1.0 / self.P0)
     if hasattr(self, "F0"):
         setattr(self, "P0", 1.0 / self.F0)
     if hasattr(self, "FB0"):
         setattr(self, "PB", (1.0 / self.FB0) / 86400.0)
     if hasattr(self, "P0_ERR"):
         if hasattr(self, "P1_ERR"):
             f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1, self.P1_ERR)
             setattr(self, "F0_ERR", ferr)
             setattr(self, "F1", fd)
             setattr(self, "F1_ERR", fderr)
         else:
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, "F0_ERR", self.P0_ERR / (self.P0 * self.P0))
             setattr(self, "F1", fd)
     if hasattr(self, "F0_ERR"):
         if hasattr(self, "F1_ERR"):
             p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1, self.F1_ERR)
             setattr(self, "P0_ERR", perr)
             setattr(self, "P1", pd)
             setattr(self, "P1_ERR", pderr)
         else:
             p, pd, = pu.p_to_f(self.F0, self.F1)
             setattr(self, "P0_ERR", self.F0_ERR / (self.F0 * self.F0))
             setattr(self, "P1", pd)
     if hasattr(self, "EPS1") and hasattr(self, "EPS2"):
         ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
         omega = math.atan2(self.EPS1, self.EPS2)
         setattr(self, "E", ecc)
         setattr(self, "OM", omega * pu.RADTODEG)
         setattr(self, "T0", self.TASC + self.PB * omega / pu.TWOPI)
     if hasattr(self, "PB") and hasattr(self, "A1") and not (hasattr(self, "E") or hasattr(self, "ECC")):
         setattr(self, "E", 0.0)
     if hasattr(self, "T0") and not hasattr(self, "TASC"):
         setattr(self, "TASC", self.T0 - self.PB * self.OM / 360.0)
     pf.close()
Example #8
0
    def read(self, parfilenm):
        self.FILE = parfilenm
        #print parfilenm
        pf = open(parfilenm)
        for line in pf.readlines():
            # Convert any 'D-' or 'D+' to 'E-' or 'E+'
            line = line.replace("D-", "E-")
            line = line.replace("D+", "E+")
            try:
                splitline = line.split()
                key = splitline[0]
                if key in str_keys:
                    setattr(self, key, splitline[1])
                elif key in float_keys:
                    try:
                        setattr(self, key, float(splitline[1]))
                    except ValueError:
                        pass
                if len(
                        splitline
                ) == 3:  # Some parfiles don't have flags, but do have errors
                    if splitline[2] not in ['0', '1']:
                        setattr(self, key + '_ERR', float(splitline[2]))
                if len(splitline) == 4:
                    setattr(self, key + '_ERR', float(splitline[3]))
            except:
                if line.strip():
                    print ' ', line
# Read PSR name
        if hasattr(self, 'PSR'):
            setattr(self, 'PSR', self.PSR)
        if hasattr(self, 'PSRJ'):
            setattr(self, 'PSRJ', self.PSRJ)
        # Deal with Ecliptic coords
        if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
            self.use_eclip = True
            setattr(self, 'ELAT', self.BETA)
            setattr(self, 'ELONG', self.LAMBDA)
        if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
            self.use_eclip = True
            if hasattr(self, 'POSEPOCH'):
                epoch = self.POSEPOCH
            else:
                epoch = self.PEPOCH
            ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
                                        self.ELAT * pu.DEGTORAD, epoch)
            rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
            dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
            setattr(self, 'RAJ', rstr)
            setattr(self, 'DECJ', dstr)
        if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
            setattr(self, 'PMELONG', self.PMELONG)
            setattr(self, 'PMELAT', self.PMELAT)
        if hasattr(self, 'RAJ'):
            setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
        if hasattr(self, 'DECJ'):
            setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
        # Compute the Galactic coords
        if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
            l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
            setattr(self, 'GLONG', l * pu.RADTODEG)
            setattr(self, 'GLAT', b * pu.RADTODEG)
        # Compute the Ecliptic coords
        if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
            if hasattr(self, 'POSEPOCH'):
                epoch = self.POSEPOCH
            else:
                epoch = self.PEPOCH
            elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
            setattr(self, 'ELONG', elon * pu.RADTODEG)
            setattr(self, 'ELAT', elat * pu.RADTODEG)
        if hasattr(self, 'P'):
            setattr(self, 'P0', self.P)
        if hasattr(self, 'P0'):
            setattr(self, 'F0', 1.0 / self.P0)
        if hasattr(self, 'F0'):
            setattr(self, 'P0', 1.0 / self.F0)
        if hasattr(self, 'F1'):
            setattr(self, 'P1', -self.F1 / (self.F0 * self.F0))
        if hasattr(self, 'FB0'):
            setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
        if hasattr(self, 'P0_ERR'):
            if hasattr(self, 'P1_ERR'):
                f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
                                               self.P1_ERR)
                setattr(self, 'F0_ERR', ferr)
                setattr(self, 'F1', fd)
                setattr(self, 'F1_ERR', fderr)
            else:
                f, fd, = pu.p_to_f(self.P0, self.P1)
                setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
                setattr(self, 'F1', fd)
        if hasattr(self, 'F0_ERR'):
            if hasattr(self, 'F1_ERR'):
                p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
                                               self.F1_ERR)
                setattr(self, 'P0_ERR', perr)
                setattr(self, 'P1', pd)
                setattr(self, 'P1_ERR', pderr)
            else:
                p, pd, = pu.p_to_f(self.F0, self.F1)
                setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
                setattr(self, 'P1', pd)
        if hasattr(self, 'DM'):
            setattr(self, 'DM', self.DM)
        if hasattr(self, 'DM1'):
            setattr(self, 'DM1', self.DM1)
        if hasattr(self, 'DM2'):
            setattr(self, 'DM2', self.DM2)
        if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
            self.use_ell = True
            ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
            omega = math.atan2(self.EPS1, self.EPS2)
            if self.EPS1 == 0.0 and self.EPS2 == 0.0:
                ecc_err = pow(
                    pow(self.EPS1_ERR, 2) + pow(self.EPS2_ERR, 2), .5)
            else:
                ecc_err = pow(
                    pow(self.EPS1 * self.EPS1_ERR, 2) +
                    pow(self.EPS2 * self.EPS2_ERR, 2), 0.5) / ecc
            setattr(self, 'ECC', ecc)
            setattr(self, 'ECC_ERR', ecc_err)
            setattr(self, 'OM', omega)
        if hasattr(self, 'PB') and hasattr(self,
                                           'A1') and not hasattr(self, 'ECC'):
            setattr(self, 'ECC', 0.0)
        if hasattr(self, 'BINARY'):
            setattr(self, 'BINARY', self.BINARY)
        if hasattr(self, 'KIN'):
            setattr(self, 'SINI', math.sin(self.KIN * np.pi / 180.))
            setattr(
                self, 'SINI_ERR',
                math.sin(self.KIN * np.pi / 180.) -
                math.sin(self.KIN * np.pi / 180. -
                         self.KIN_ERR * np.pi / 180.))
        pf.close()
Example #9
0
 def __init__(self, parfilenm):
     self.FILE = parfilenm
     pf = open(parfilenm)
     for line in pf.readlines():
         # Convert any 'D-' or 'D+' to 'E-' or 'E+'
         line = line.replace("D-", "E-")
         line = line.replace("D+", "E+")
         splitline = line.split()
         key = splitline[0]
         if key in str_keys:
             setattr(self, key, splitline[1])
         elif key in float_keys:
             try:
                 setattr(self, key, float(splitline[1]))
             except ValueError:
                 pass
         if len(splitline)==3:  # Some parfiles don't have flags, but do have errors
             if splitline[2] not in ['0', '1']:
                 setattr(self, key+'_ERR', float(splitline[2]))
         if len(splitline)==4:
             setattr(self, key+'_ERR', float(splitline[3]))
     # Deal with Ecliptic coords
     if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
         setattr(self, 'ELAT', self.BETA)
         setattr(self, 'ELONG', self.LAMBDA)
     if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         ra_rad, dec_rad = sla_ecleq(self.ELONG*pu.DEGTORAD,
                                     self.ELAT*pu.DEGTORAD, epoch)
         rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
         dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
         setattr(self, 'RAJ', rstr)
         setattr(self, 'DECJ', dstr)
     if hasattr(self, 'RAJ'):
         setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
     if hasattr(self, 'DECJ'):
         setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
     # Compute the Galactic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
         setattr(self, 'GLONG', l*pu.RADTODEG)
         setattr(self, 'GLAT', b*pu.RADTODEG)
     # Compute the Ecliptic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
         setattr(self, 'ELONG', elon*pu.RADTODEG)
         setattr(self, 'ELAT', elat*pu.RADTODEG)
     if hasattr(self, 'P'):
         setattr(self, 'P0', self.P)
     if hasattr(self, 'P0'):
         setattr(self, 'F0', 1.0/self.P0)
     if hasattr(self, 'F0'):
         setattr(self, 'P0', 1.0/self.F0)
     if hasattr(self, 'FB0'):
         setattr(self, 'PB', (1.0/self.FB0)/86400.0)
     if hasattr(self, 'P0_ERR'):
         if hasattr(self, 'P1_ERR'):
             f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR,
                                            self.P1, self.P1_ERR)
             setattr(self, 'F0_ERR', ferr) 
             setattr(self, 'F1', fd) 
             setattr(self, 'F1_ERR', fderr) 
         else:
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F0_ERR', self.P0_ERR/(self.P0*self.P0))
             setattr(self, 'F1', fd) 
     if hasattr(self, 'F0_ERR'):
         if hasattr(self, 'F1_ERR'):
             p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR,
                                            self.F1, self.F1_ERR)
             setattr(self, 'P0_ERR', perr) 
             setattr(self, 'P1', pd) 
             setattr(self, 'P1_ERR', pderr) 
         else:
             p, pd, = pu.p_to_f(self.F0, self.F1)
             setattr(self, 'P0_ERR', self.F0_ERR/(self.F0*self.F0))
             setattr(self, 'P1', pd) 
     if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
         ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
         omega = math.atan2(self.EPS1, self.EPS2)
         setattr(self, 'E', ecc)
         setattr(self, 'OM', omega * pu.RADTODEG)
         setattr(self, 'T0', self.TASC + self.PB * omega/pu.TWOPI)
     if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
            (hasattr(self, 'E') or hasattr(self, 'ECC')):
         setattr(self, 'E', 0.0)
     if hasattr(self, 'T0') and hasattr(self, 'PB') and hasattr(self, 'OM')  and not hasattr(self, 'TASC'):
         setattr(self, 'TASC', self.T0 - self.PB * self.OM/360.0)
     pf.close()
Example #10
0
                print "skip           = ", skip
                print "1st_file_samps = ", first_file_samples
                print "numfiles       = ", numfiles
            break
        else:
            accum_samples += samples_per_file[ii]

    # Now make a command line option for spigot2filterbank
    tmpfilenm = "tmp%d.fil" % random.randint(0, 2**30)
    cmd = "spigot2filterbank -skip %d -numout %d -o %s " % \
          (skip, raw_N, tmpfilenm)
    for goodfile in infilenms[ii:ii + numfiles]:
        cmd += "%s " % goodfile
    os.system(cmd)

    # Now read the header to determine what the correct filename
    # should be.  Use that to rename the fil file.

    filhdr, hdrlen = sigproc.read_header(tmpfilenm)
    MJDi = int(filhdr['tstart'])
    ra_rad = sigproc.ra2radians(filhdr['src_raj'])
    ra_string = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
    dec_rad = sigproc.dec2radians(filhdr['src_dej'])
    dec_string = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
    str_coords = "".join(ra_string.split(":")[:2])
    if dec_rad >= 0.0: str_coords += "+"
    str_coords += "".join(dec_string.split(":")[:2])
    filfilenm = "GBT350drift_%d_%s.fil" % (MJDi, str_coords)
    os.rename(tmpfilenm, filfilenm)
    print "Renamed '%s' to '%s'." % (tmpfilenm, filfilenm)
Example #11
0
 def __init__(self, parfilenm):
     self.FILE = parfilenm
     pf = open(parfilenm)
     for line in pf.readlines():
         # Skip comments
         if line[0]=='#':
             continue
         # Convert any 'D-' or 'D+' to 'E-' or 'E+'
         line = line.replace("D-", "E-")
         line = line.replace("D+", "E+")
         splitline = line.split()
         # Skip blank lines
         if len(splitline)==0:
             continue
         key = splitline[0]
         # Regex checks for non-digit chars, followed by digit chars
         m1 = re.search(r'(\D+)(\d+)$', key)
         # This one looks for the DMX[RF][12]_* params
         m2 = re.search(r'(\D+\d+_)(\d+)$', key)
         if key == "JUMP":
             if splitline[3] not in ['0', '1']:
                 setattr(self, key+'_%s'%splitline[2], float(splitline[3]))
             if len(splitline)==5:
                 if splitline[4] not in ['0', '1']:
                     setattr(self, key+'_%s'%splitline[2]+'_ERR',
                             float(splitline[4]))
             elif len(splitline)==6:
                 setattr(self, key+'_%s'%splitline[2]+'_ERR',
                         float(splitline[5]))
         if key in str_keys:
             setattr(self, key, splitline[1])
         elif key in float_keys:
             try:
                 setattr(self, key, float(splitline[1]))
             except ValueError:
                 pass
         elif m1 is not None:
             m = m1
             if m2 is not None:
                 m = m2
             if m.group(1) in floatn_keys:
                 try:
                     setattr(self, key, float(splitline[1]))
                 except ValueError:
                     pass
         if len(splitline)==3:  # Some parfiles don't have flags, but do have errors
             if splitline[2] not in ['0', '1']:
                 setattr(self, key+'_ERR', float(splitline[2]))
         if len(splitline)==4:
             setattr(self, key+'_ERR', float(splitline[3]))
     # Deal with Ecliptic coords
     if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
         setattr(self, 'ELAT', self.BETA)
         setattr(self, 'ELONG', self.LAMBDA)
     if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         ra_rad, dec_rad = sla_ecleq(self.ELONG*pu.DEGTORAD,
                                     self.ELAT*pu.DEGTORAD, epoch)
         rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
         dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
         setattr(self, 'RAJ', rstr)
         setattr(self, 'DECJ', dstr)
     if hasattr(self, 'RAJ'):
         setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
     if hasattr(self, 'DECJ'):
         setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
     # Compute the Galactic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
         setattr(self, 'GLONG', l*pu.RADTODEG)
         setattr(self, 'GLAT', b*pu.RADTODEG)
     # Compute the Ecliptic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         if hasattr(self, 'POSEPOCH'):
             epoch = self.POSEPOCH
         else:
             epoch = self.PEPOCH
         elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, epoch)
         setattr(self, 'ELONG', elon*pu.RADTODEG)
         setattr(self, 'ELAT', elat*pu.RADTODEG)
     if hasattr(self, 'P'):
         setattr(self, 'P0', self.P)
     if hasattr(self, 'P0'):
         setattr(self, 'F0', 1.0/self.P0)
     if hasattr(self, 'F0'):
         setattr(self, 'P0', 1.0/self.F0)
     if hasattr(self, 'FB0'):
         setattr(self, 'PB', (1.0/self.FB0)/86400.0)
     if hasattr(self, 'P0_ERR'):
         if hasattr(self, 'P1_ERR'):
             f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR,
                                            self.P1, self.P1_ERR)
             setattr(self, 'F0_ERR', ferr) 
             setattr(self, 'F1', fd) 
             setattr(self, 'F1_ERR', fderr) 
         else:
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F0_ERR', self.P0_ERR/(self.P0*self.P0))
             setattr(self, 'F1', fd)
     else:
         if hasattr(self, 'P1'):
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F1', fd)
         elif hasattr(self, 'F1'):
             p, pd, = pu.p_to_f(self.F0, self.F1)
             setattr(self, 'P1', pd)
     if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
         p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, 
                                        self.F1, self.F1_ERR)
         setattr(self, 'P0_ERR', perr) 
         setattr(self, 'P1', pd) 
         setattr(self, 'P1_ERR', pderr) 
     elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
         setattr(self, 'P0_ERR', self.F0_ERR/(self.F0*self.F0))
     if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
         ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
         omega = math.atan2(self.EPS1, self.EPS2)
         setattr(self, 'E', ecc)
         setattr(self, 'OM', omega * pu.RADTODEG)
         setattr(self, 'T0', self.TASC + self.PB * omega/pu.TWOPI)
     if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
            (hasattr(self, 'E') or hasattr(self, 'ECC')):
         setattr(self, 'E', 0.0)
     if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
         setattr(self, 'TASC', self.T0 - self.PB * self.OM/360.0)
     pf.close()
Example #12
0
 def __str__(self):
     out = ''
     if (self.name):
         out = out + "\nPulsar  B%s  (J%s)\n" % \
               (self.name, self.jname)
     else:
         out = out + "\nPulsar J%s\n" % (self.jname)
     if (self.alias):
         out = out + "                 Alias = %s\n" % self.alias
     if (self.assoc is not None):
         out = out + "           Association = %s\n" % self.assoc
     if (self.type is not None):
         out = out + "                  Type = %s\n" % self.type
     (h, m, s) = psr_utils.rad_to_hms(self.ra)
     serr = psr_utils.RADTOSEC * self.raerr
     out = out + "            RA (J2000) = %s +/- %.4fs\n" % \
           (psr_utils.coord_to_string(h, m, s), serr)
     (d, m, s) = psr_utils.rad_to_dms(self.dec)
     serr = psr_utils.RADTOARCSEC * self.decerr
     out = out + "           DEC (J2000) = %s +/- %.4f\"\n" % \
           (psr_utils.coord_to_string(d, m, s), serr)
     out = out + "                (l, b) = (%.2f, %.2f)\n" % \
           (self.l, self.b)
     out = out + "          DM (cm-3 pc) = %.8g +/- %.5g\n" % \
           (self.dm, self.dmerr)
     if (self.s400 is not None):
         out = out + "        S_400MHz (mJy) = %.3g +/- %.2g\n" % \
               (self.s400, self.s400err)
     if (self.s1400 is not None):
         out = out + "       S_1400MHz (mJy) = %.3g +/- %.2g\n" % \
               (self.s1400, self.s1400err)
     if (self.dist is not None):
         out = out + "        Distance (kpc) = %.3g\n" % self.dist
     out = out + "            Period (s) = %.15g +/- %.15g\n" % \
           (self.p, self.perr)
     out = out + "           P-dot (s/s) = %.8g +/- %.8g\n" % \
           (self.pd, self.pderr)
     out = out + "           Epoch (MJD) = %.10g\n" % self.pepoch
     if (self.binary):
         out = out + "          P_binary (s) = %.10g +/- %.10g\n" % \
               (self.pb*86400.0, self.pberr*86400.0)
         out = out + "          P_binary (d) = %.10g +/- %.10g\n" % \
               (self.pb, self.pberr)
         if self.x is not None:
             out = out + "        a*sin(i)/c (s) = %.8g +/- %.8g\n" % \
                   (self.x, self.xerr)
         if self.e is not None:
             out = out + "          Eccentricity = %.8g +/- %.8g\n" % \
                   (self.e, self.eerr)
             if (self.e > 0.0):
                 if self.w is not None:
                     out = out + "    Long of Peri (deg) = %.10g +/- %.10g\n" % \
                           (self.w, self.werr)
                 if self.To is not None:
                     out = out + "    Time of Peri (MJD) = %.12g +/- %.12g\n" % \
                           (self.To, self.Toerr)
         else:
             if self.To is not None:
                 out = out + "  T of Ascd Node (MJD) = %.12g +/- %.12g\n" % \
                       (self.To, self.Toerr)
     return out
            break
        else:
            accum_samples += samples_per_file[ii]
    
    # Now make a command line option for spigot2filterbank
    tmpfilenm = "tmp%d.fil"%random.randint(0,2**30)
    cmd = "spigot2filterbank -skip %d -numout %d -o %s " % \
          (skip, raw_N, tmpfilenm)
    for goodfile in infilenms[ii:ii+numfiles]:
        cmd += "%s "%goodfile
    os.system(cmd)

    # Now read the header to determine what the correct filename
    # should be.  Use that to rename the fil file.

    filhdr, hdrlen = sigproc.read_header(tmpfilenm)
    MJDi = int(filhdr['tstart'])
    ra_rad = sigproc.ra2radians(filhdr['src_raj'])
    ra_string = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
    dec_rad = sigproc.dec2radians(filhdr['src_dej'])
    dec_string = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
    str_coords = "".join(ra_string.split(":")[:2])
    if dec_rad >= 0.0:  str_coords += "+"
    str_coords += "".join(dec_string.split(":")[:2])
    filfilenm = "GBT350drift_%d_%s.fil" % (MJDi, str_coords)
    os.rename(tmpfilenm, filfilenm)
    print("Renamed '%s' to '%s'." % (tmpfilenm, filfilenm))
    

    
Example #14
0
 def __init__(self, fil_filenm):
     self.fil_filenm = fil_filenm
     self.basefilenm = fil_filenm.rstrip(".fil")
     self.beam = int(self.basefilenm[-1])
     filhdr, self.hdrlen = sigproc.read_header(fil_filenm)
     self.orig_filenm = filhdr['rawdatafile']
     self.MJD = filhdr['tstart']
     self.nchans = filhdr['nchans']
     self.ra_rad = sigproc.ra2radians(filhdr['src_raj'])
     self.ra_string = psr_utils.coord_to_string(\
         *psr_utils.rad_to_hms(self.ra_rad))
     self.dec_rad = sigproc.dec2radians(filhdr['src_dej'])
     self.dec_string = psr_utils.coord_to_string(\
         *psr_utils.rad_to_dms(self.dec_rad))
     self.az = filhdr['az_start']
     self.el = 90.0 - filhdr['za_start']
     self.BW = abs(filhdr['foff']) * filhdr['nchans']
     self.dt = filhdr['tsamp']
     self.orig_N = sigproc.samples_per_file(fil_filenm, filhdr, self.hdrlen)
     self.orig_T = self.orig_N * self.dt
     self.N = psr_utils.choose_N(self.orig_N)
     self.T = self.N * self.dt
     # Update the RA and DEC from the database file if required
     newposn = read_db_posn(self.orig_filenm, self.beam)
     if newposn is not None:
         self.ra_string, self.dec_string = newposn
         # ... and use them to update the filterbank file
         fix_fil_posn(fil_filenm, self.hdrlen, self.ra_string,
                      self.dec_string)
     # Determine the average barycentric velocity of the observation
     self.baryv = presto.get_baryv(self.ra_string,
                                   self.dec_string,
                                   self.MJD,
                                   self.T,
                                   obs="AO")
     # Where to dump all the results
     # Directory structure is under the base_output_directory
     # according to base/MJD/filenmbase/beam
     self.outputdir = os.path.join(base_output_directory,
                                   str(int(self.MJD)), self.basefilenm[:-2],
                                   str(self.beam))
     # Figure out which host we are processing on
     self.hostname = socket.gethostname()
     # The fraction of the data recommended to be masked by rfifind
     self.masked_fraction = 0.0
     # Initialize our timers
     self.rfifind_time = 0.0
     self.downsample_time = 0.0
     self.subbanding_time = 0.0
     self.dedispersing_time = 0.0
     self.FFT_time = 0.0
     self.lo_accelsearch_time = 0.0
     self.hi_accelsearch_time = 0.0
     self.singlepulse_time = 0.0
     self.sifting_time = 0.0
     self.folding_time = 0.0
     self.total_time = 0.0
     # Inialize some candidate counters
     self.num_sifted_cands = 0
     self.num_folded_cands = 0
     self.num_single_cands = 0
Example #15
0
def main():
    observations = [pfd_snr.Observation(pfdfn) for pfdfn in sys.argv[1:]]
    data = np.array([(o.snr, o.ra, o.dec) for o in observations])
    if debug:
        print "data:"
        for z in data:
            print "\tSNR:", z[0], "RA:", z[1], "Dec:", z[2]
    # Init guess is max SNR, weighted avg of RA, weighted avg of Dec
    data_T = data.transpose()
    init_params = (data_T[0].max(), (data_T[0]*data_T[1]).sum()/data_T[0].sum(), \
                        (data_T[0]*data_T[2]).sum()/data_T[0].sum())
    if debug:
        print "initial parameters:"
        print "\tSNR:", init_params[0], "RA:", init_params[
            1], "Dec:", init_params[2]
    global beam_profile
    # Use gain = 1
    beam_profile = estimate_snr.EstimateFWHMSNR(3.35 / 2.0, 1420, 100, 2, 1,
                                                24)
    result = fit(init_params, data)
    if debug:
        print "results:"
        print "\tSNR:", result[0], "RA:", result[1], "Dec:", result[2]
    psrsnr, psrra, psrdec = result
    snrs, ras, decs = data.transpose()
    plt.figure(figsize=(8.5, 11))
    plt.subplot(211)
    plt.title("Fitting gridding observations to determine pulsar position")
    plt.scatter((ras - psrra) * 60 / 15.0, (decs - psrdec) * 60,
                c=snrs,
                marker='o',
                label='_nolegend_')
    plt.spring()
    cbar = plt.colorbar()
    cbar.set_label(r"$SNR$")
    plt.scatter(np.array([0]), np.array([0]), s=100, c='k', marker=(5,1,0), \
                    label='Best PSR posn')
    if debug:
        plt.scatter(np.array([init_params[1]-psrra])*60/15.0, \
                        np.array([init_params[2]-psrdec])*60, \
                            s=100, c='w', marker=(5,1,0), label='Init PSR posn')
    plt.legend(loc='best')
    plt.xlabel("RA (sec) + %02.0f:%02.0f:%07.4f" %
               psr_utils.rad_to_hms(psrra / 60.0 * psr_utils.DEGTORAD))
    plt.ylabel("Dec (arcsec) + %02.0f:%02.0f:%07.4f" %
               psr_utils.rad_to_dms(psrdec / 60.0 * psr_utils.DEGTORAD))

    obsangseps = np.zeros(len(snrs))
    for ii in range(len(snrs)):
        obsangseps[ii] = angsep_arcmin(psrra, psrdec, ras[ii], decs[ii])
    maxangsep = obsangseps.max()
    angseps = np.linspace(0, maxangsep * 1.1, 1000)
    plt.subplot(212)
    plt.plot(angseps,
             psrsnr * beam_profile.gain_at_angular_offset(angseps),
             'k',
             zorder=-1)
    plt.scatter(obsangseps, snrs, c=snrs, zorder=1)
    plt.xlabel("Angular separation (arcmin)")
    plt.ylabel("SNR")
    plt.savefig('gridding.tmp.ps', papertype='letter', orientation='portrait')
    cid_keypress = plt.gcf().canvas.mpl_connect('key_press_event', \
                                                    keypress)
    plt.show()
Example #16
0
 def __init__(self, parfilenm):
     self.FILE = parfilenm
     pf = open(parfilenm)
     for line in pf.readlines():
         # Skip comments
         if line[0] == '#':
             continue
         # Convert any 'D-' or 'D+' to 'E-' or 'E+'
         line = line.replace("D-", "E-")
         line = line.replace("D+", "E+")
         splitline = line.split()
         # Skip blank lines
         if len(splitline) == 0:
             continue
         key = splitline[0]
         # Regex checks for non-digit chars, followed by digit chars
         m1 = re.search(r'(\D+)(\d+)$', key)
         # This one looks for the DMX[RF][12]_* params
         m2 = re.search(r'(\D+\d+_)(\d+)$', key)
         if key == "JUMP":
             if splitline[3] not in ['0', '1']:
                 setattr(self, key + '_%s' % splitline[2],
                         float(splitline[3]))
             if len(splitline) == 5:
                 if splitline[4] not in ['0', '1']:
                     setattr(self, key + '_%s' % splitline[2] + '_ERR',
                             float(splitline[4]))
             elif len(splitline) == 6:
                 setattr(self, key + '_%s' % splitline[2] + '_ERR',
                         float(splitline[5]))
         if key in str_keys:
             setattr(self, key, splitline[1])
         elif key in float_keys:
             try:
                 setattr(self, key, float(splitline[1]))
             except ValueError:
                 pass
         elif m1 is not None:
             m = m1
             if m2 is not None:
                 m = m2
             if m.group(1) in floatn_keys:
                 try:
                     setattr(self, key, float(splitline[1]))
                 except ValueError:
                     pass
         if len(
                 splitline
         ) == 3:  # Some parfiles don't have flags, but do have errors
             if splitline[2] not in ['0', '1']:
                 setattr(self, key + '_ERR', float(splitline[2]))
         if len(splitline) == 4:
             setattr(self, key + '_ERR', float(splitline[3]))
     # Deal with Ecliptic coords
     if (hasattr(self, 'BETA') and hasattr(self, 'LAMBDA')):
         setattr(self, 'ELAT', self.BETA)
         setattr(self, 'ELONG', self.LAMBDA)
     if (slalib and hasattr(self, 'ELAT') and hasattr(self, 'ELONG')):
         # TEMPO's ecliptic coords are always based on J2000 epoch
         ra_rad, dec_rad = sla_ecleq(self.ELONG * pu.DEGTORAD,
                                     self.ELAT * pu.DEGTORAD, J2000)
         rstr = pu.coord_to_string(*pu.rad_to_hms(ra_rad))
         dstr = pu.coord_to_string(*pu.rad_to_dms(dec_rad))
         setattr(self, 'RAJ', rstr)
         setattr(self, 'DECJ', dstr)
     if hasattr(self, 'RAJ'):
         setattr(self, 'RA_RAD', pu.ra_to_rad(self.RAJ))
     if hasattr(self, 'DECJ'):
         setattr(self, 'DEC_RAD', pu.dec_to_rad(self.DECJ))
     # Compute the Galactic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         l, b = sla_eqgal(self.RA_RAD, self.DEC_RAD)
         setattr(self, 'GLONG', l * pu.RADTODEG)
         setattr(self, 'GLAT', b * pu.RADTODEG)
     # Compute the Ecliptic coords
     if (slalib and hasattr(self, 'RA_RAD') and hasattr(self, 'DEC_RAD')):
         # TEMPO's ecliptic coords are always based on J2000 epoch
         elon, elat = sla_eqecl(self.RA_RAD, self.DEC_RAD, J2000)
         setattr(self, 'ELONG', elon * pu.RADTODEG)
         setattr(self, 'ELAT', elat * pu.RADTODEG)
     if hasattr(self, 'P'):
         setattr(self, 'P0', self.P)
     if hasattr(self, 'P0'):
         setattr(self, 'F0', 1.0 / self.P0)
     if hasattr(self, 'F0'):
         setattr(self, 'P0', 1.0 / self.F0)
     if hasattr(self, 'FB0'):
         setattr(self, 'PB', (1.0 / self.FB0) / 86400.0)
     if hasattr(self, 'P0_ERR'):
         if hasattr(self, 'P1_ERR'):
             f, ferr, fd, fderr = pu.pferrs(self.P0, self.P0_ERR, self.P1,
                                            self.P1_ERR)
             setattr(self, 'F0_ERR', ferr)
             setattr(self, 'F1', fd)
             setattr(self, 'F1_ERR', fderr)
         else:
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F0_ERR', self.P0_ERR / (self.P0 * self.P0))
             setattr(self, 'F1', fd)
     else:
         if hasattr(self, 'P1'):
             f, fd, = pu.p_to_f(self.P0, self.P1)
             setattr(self, 'F1', fd)
         elif hasattr(self, 'F1'):
             p, pd, = pu.p_to_f(self.F0, self.F1)
             setattr(self, 'P1', pd)
     if (hasattr(self, 'F0_ERR') and hasattr(self, 'F1_ERR')):
         p, perr, pd, pderr = pu.pferrs(self.F0, self.F0_ERR, self.F1,
                                        self.F1_ERR)
         setattr(self, 'P0_ERR', perr)
         setattr(self, 'P1', pd)
         setattr(self, 'P1_ERR', pderr)
     elif (hasattr(self, 'F0') and hasattr(self, 'F0_ERR')):
         setattr(self, 'P0_ERR', self.F0_ERR / (self.F0 * self.F0))
     if hasattr(self, 'EPS1') and hasattr(self, 'EPS2'):
         ecc = math.sqrt(self.EPS1 * self.EPS1 + self.EPS2 * self.EPS2)
         omega = math.atan2(self.EPS1, self.EPS2)
         setattr(self, 'E', ecc)
         setattr(self, 'OM', omega * pu.RADTODEG)
         setattr(self, 'T0', self.TASC + self.PB * omega / pu.TWOPI)
     if hasattr(self, 'PB') and hasattr(self, 'A1') and not \
            (hasattr(self, 'E') or hasattr(self, 'ECC')):
         setattr(self, 'E', 0.0)
     if hasattr(self, 'T0') and not hasattr(self, 'TASC'):
         setattr(self, 'TASC', self.T0 - self.PB * self.OM / 360.0)
     if hasattr(self, 'E') and not hasattr(self, 'ECC'):
         setattr(self, 'ECC', self.E)
         if not hasattr(self, 'EPS1'):
             setattr(self, 'ECC_ERR', self.E_ERR)
     if hasattr(self, 'ECC') and not hasattr(self, 'E'):
         setattr(self, 'E', self.ECC)
         setattr(self, 'E_ERR', self.ECC_ERR)
     pf.close()