def start_iohub(sess_code=None):
import time, os
# Create initial default session code
if sess_code is None:
sess_code='S_{0}'.format(long(time.mktime(time.localtime())))
# Ask for session name / hdf5 file name
save_to = fileSaveDlg(initFilePath=os.path.dirname(__file__),initFileName=sess_code,
prompt="Set Session Output File",
allowed="ioHub Datastore Files (*.hdf5)|*.hdf5")
if save_to:
# session code should equal results file name
fdir, sess_code = os.path.split(save_to)
sess_code=sess_code[0:min(len(sess_code),24)]
if sess_code.endswith('.hdf5'):
sess_code = sess_code[:-5]
if save_to.endswith('.hdf5'):
save_to = save_to[:-5]
else:
save_to = sess_code
exp_code='wintab_evts_test'
kwargs={'experiment_code':exp_code,
'session_code':sess_code,
'datastore_name':save_to,
'wintab.WintabTablet':{'name':'tablet',
'mouse_simulation': {'enable':False,
'leave_region_timeout':2.0
}
}
}
return launchHubServer(**kwargs)
def save(self, event=None):
"""save header + row x col data to a pickle file
"""
self.getData(True) # update self.data
adjustedNames = False
for i, paramName in enumerate(self.data[0]):
newName = paramName
# ensure its legal as a var name, including namespace check:
if self.parent:
msg, enable = self.parent._checkName(name=paramName)
if msg: # msg not empty means a namespace issue
newName = self.parent.exp.namespace.makeValid(
paramName, prefix='param')
adjustedNames = True
elif not valid_var_re.match(paramName):
msg, enable = _translate(
"Name must be alpha-numeric or _, no spaces"), False
newName = _nonalphanumeric_re.sub('_', newName)
adjustedNames = True
else:
msg, enable = "", True
# try to ensure its unique:
while newName in self.data[0][:i]:
adjustedNames = True
newName += 'x' # might create a namespace conflict?
self.data[0][i] = newName
self.header[i].SetValue(newName) # displayed value
if adjustedNames:
self.tmpMsg.SetLabel(
_translate('Param name(s) adjusted to be legal. Look ok?'))
return False
if hasattr(self, 'fileName') and self.fileName:
fname = self.fileName
else:
self.newFile = True
fname = self.defaultFileName
if self.newFile or not os.path.isfile(fname):
fullPath = gui.fileSaveDlg(initFilePath=os.path.split(fname)[0],
initFileName=os.path.basename(fname),
allowed="Pickle files (*.pkl)|*.pkl")
else:
fullPath = fname
if fullPath: # None if user canceled
if not fullPath.endswith('.pkl'):
fullPath += '.pkl'
f = open(fullPath, 'w')
pickle.dump(self.data, f)
f.close()
self.fileName = fullPath
self.newFile = False
# ack, sometimes might want relative path
if self.parent:
self.parent.conditionsFile = fullPath
return True
def save(self, event=None):
"""save header + row x col data to a pickle file
"""
self.getData(True) # update self.data
adjustedNames = False
for i, paramName in enumerate(self.data[0]):
newName = paramName
# ensure its legal as a var name, including namespace check:
if self.parent:
msg, enable = self.parent._checkName(name=paramName)
if msg: # msg not empty means a namespace issue
newName = self.parent.exp.namespace.makeValid(
paramName, prefix='param')
adjustedNames = True
elif not _valid_var_re.match(paramName):
msg, enable = _translate(
"Name must be alpha-numeric or _, no spaces"), False
newName = _nonalphanumeric_re.sub('_', newName)
adjustedNames = True
else:
msg, enable = "", True
# try to ensure its unique:
while newName in self.data[0][:i]:
adjustedNames = True
newName += 'x' # might create a namespace conflict?
self.data[0][i] = newName
self.header[i].SetValue(newName) # displayed value
if adjustedNames:
self.tmpMsg.SetLabel(_translate(
'Param name(s) adjusted to be legal. Look ok?'))
return False
if hasattr(self, 'fileName') and self.fileName:
fname = self.fileName
else:
self.newFile = True
fname = self.defaultFileName
if self.newFile or not os.path.isfile(fname):
fullPath = gui.fileSaveDlg(initFilePath=os.path.split(fname)[0],
initFileName=os.path.basename(fname),
allowed="Pickle files (*.pkl)|*.pkl")
else:
fullPath = fname
if fullPath: # None if user canceled
if not fullPath.endswith('.pkl'):
fullPath += '.pkl'
f = open(fullPath, 'w')
pickle.dump(self.data, f)
f.close()
self.fileName = fullPath
self.newFile = False
# ack, sometimes might want relative path
if self.parent:
self.parent.conditionsFile = fullPath
return True
def save_raw_file(self, saveAtMoment=False):
self.scanClient.stop_sending_data()
default_name = time.strftime("eeg_epoch_%Y_%m_%d_%Hh%Mm%Ss.mat",
time.localtime())
fullPath = fileSaveDlg(initFilePath="D:\\temp\\EEG_DATA",
initFileName=default_name,
prompt='保存 EEG Epoch 数据',
allowed="Matlab file (*.mat)")
self.saveFileName = fullPath
if saveAtMoment:
self._save_raw_file(fullPath)
def start_iohub(sess_code=None):
import time, os
# Create initial default session code
if sess_code is None:
sess_code = 'S_{0}'.format(long(time.mktime(time.localtime())))
# Ask for session name / hdf5 file name
save_to = fileSaveDlg(initFilePath=os.path.dirname(__file__),
initFileName=sess_code,
prompt="Set Session Output File",
allowed="ioHub Datastore Files (*.hdf5)|*.hdf5")
if save_to:
# session code should equal results file name
fdir, sess_code = os.path.split(save_to)
sess_code = sess_code[0:min(len(sess_code), 24)]
if sess_code.endswith('.hdf5'):
sess_code = sess_code[:-5]
if save_to.endswith('.hdf5'):
save_to = save_to[:-5]
else:
save_to = sess_code
exp_code = 'wintab_evts_test'
kwargs = {
'experiment_code': exp_code,
'session_code': sess_code,
'datastore_name': save_to,
'wintab.WintabTablet': {
'name': 'tablet',
'mouse_simulation': {
'enable': False,
'leave_region_timeout': 2.0
}
}
}
return launchHubServer(**kwargs)
'Watch', # 'Test', # option in PromptTools.GetPrompts (options are ['Watch','Test'])
# declare other stimulus parameters
'fullScreen': True, # run in full screen mode?
'screenToShow': 0, # display on primary screen (0) or secondary (1)?
'fixCrossSize': 10, # size of cross, in pixels
'movieVolume': 0.5, # the volume (0-1) of the movie audio
'movieSize':
[640,
360] # [854, 480] # [700, 500] # width, height of movie (in pixels)
}
# save parameters
if saveParams:
dlgResult = gui.fileSaveDlg(
prompt='Save Params...',
initFilePath=os.getcwd() + '/Params',
initFileName=newParamsFilename,
allowed="PICKLE files (*.pkl);;All files (*.*)")
newParamsFilename = dlgResult
if newParamsFilename is None: # keep going, but don't save
saveParams = False
else:
print("Saving %s" % newParamsFilename)
toFile(newParamsFilename, params) # save it!
# Pilot-only parameters
skipDur = 5.0 # the time (in seconds) that you can skip back or forward by pressing < or >
# ========================== #
# ===== SET UP LOGGING ===== #
# ========================== #
True, # shuffle order of cues randomly (without replacement)
# other stimulus parameters
'fullScreen': True, # run in full screen mode?
'screenToShow': 0, # display on primary screen (0) or secondary (1)?
'fixCrossSize': 50, # size of cross, in pixels
'fixCrossPos': (
0, 0
), # (x,y) pos of fixation cross displayed before each page (for drift correction)
'fixColor': '#FF0000' # hex color of fixation cross
}
# save parameters
if saveParams:
dlgResult = gui.fileSaveDlg(
prompt='Save Params...',
initFilePath=os.getcwd() + '/Params',
initFileName=newParamsFilename,
allowed="PICKLE files (.pickle)|.pickle|All files (.*)|")
newParamsFilename = dlgResult
if newParamsFilename is None: # keep going, but don't save
saveParams = False
else:
toFile(newParamsFilename, params) # save it!
# ========================== #
# ===== SET UP LOGGING ===== #
# ========================== #
try: #try to get a previous parameters file
expInfo = fromFile('lastMultiTaskAvInfo.pickle')
expInfo['session'] += 1 # automatically increment session number
expInfo['paramsFile'] = [expInfo['paramsFile'], 'Load...']
myWin.update()
#run the staircase
for trialN in range(info['nTrials']):
for stairCase in stairCases:
thisGamma = stairCase.next()
t = globalClock.getTime()
myWin.gamma = [thisGamma, thisGamma, thisGamma]
direction = num.random.randint(0, 2) * 2 - 1 # a random number -1 or 1
presentStimulus(direction)
#print direction, thisGamma
ans = getResponse(direction)
stairCase.addData(ans)
myWin.update()
core.wait(0.5)
myWin.close()
#save data
fileName = gui.fileSaveDlg('.', '%s_%s' % (info['observer'], info['timeStr']))
stairCases[1].saveAsPickle(fileName + 'hi')
stairCases[1].saveAsText(fileName + 'hi')
stairCases[0].saveAsPickle(fileName + 'lo')
stairCases[0].saveAsText(fileName + 'lo')
print 'That took %.1fmins' % (globalClock.getTime() / 60.0)
#then blank the screen
myWin.update()
#run the staircase
for trialN in range(info['nTrials']):
for stairCase in stairCases:
thisGamma=stairCase.next()
t = globalClock.getTime()
myWin.gamma = [thisGamma,thisGamma,thisGamma]
direction=num.random.randint(0,2)*2-1 # a random number -1 or 1
presentStimulus(direction)
#print direction, thisGamma
ans=getResponse(direction)
stairCase.addData(ans)
myWin.update()
core.wait(0.5)
myWin.close()
#save data
fileName=gui.fileSaveDlg('.','%s_%s' %(info['observer'], info['timeStr']))
stairCases[1].saveAsPickle(fileName+'hi')
stairCases[1].saveAsText(fileName+'hi')
stairCases[0].saveAsPickle(fileName+'lo')
stairCases[0].saveAsText(fileName+'lo')
print 'That took %.1fmins' %(globalClock.getTime()/60.0)
for k in range(5, 8):
Verb2[i][k] = int(Verb2[i][k])
for j in range(9, 12):
Verb2[i][j] = float(Verb2[i][j])
relstats = reliability(Verb1, Verb2)
doneDlg = gui.Dlg(title="Calculations complete!",
labelButtonOK="Yes",
labelButtonCancel="No")
doneDlg.addText("Weighted percentage agreement: " +
str(relstats['WeightedPercentageAgreement']))
doneDlg.addText("Cohen's Kappa: " + str(relstats['CohensKappa']))
doneDlg.addText("Average observer agreement: " +
str(relstats['AverageObserverAgreement']))
doneDlg.addText("Pearson's R: " + str(relstats['PearsonsR']))
doneDlg.addText("Save output?")
doneDlg.show()
if doneDlg.OK:
sDlg = gui.fileSaveDlg(initFilePath=os.getcwd(),
initFileName=str(thisInfo[0]) + '_' +
str(thisInfo[1]) + '_Stats.csv')
if type(sDlg) is not NoneType:
headers3 = [
'WeightedPercentageAgreement', 'CohensKappa',
'AverageObserverAgreement', 'PearsonsR'
]
outputWriter4 = csv.DictWriter(open(sDlg, 'w'),
fieldnames=headers3,
extrasaction='ignore',
lineterminator='\n')
outputWriter4.writeheader()
outputWriter4.writerow(relstats)
'imageSuffix': '.jpg', # images will be selected randomly (without replacement) from all files in imageDir that end in imageSuffix.
# declare prompt and question files
'skipPrompts': False, # go right to the scanner-wait page
'promptDir': 'Text/', # directory containing prompts and questions files
'promptFile': 'SamplePrompts.txt', # Name of text file containing prompts
# declare display parameters
'fullScreen': True, # run in full screen mode?
'screenToShow': 1, # display on primary screen (0) or secondary (1)?
'fixCrossSize': 10, # size of cross, in pixels
'fixCrossPos': [0,0], # (x,y) pos of fixation cross displayed before each stimulus (for gaze drift correction)
'screenColor':(128,128,128) # in rgb255 space: (r,g,b) all between 0 and 255
}
# save parameters
if saveParams:
dlgResult = gui.fileSaveDlg(prompt='Save Params...',initFilePath = os.getcwd() + '/Params', initFileName = newParamsFilename,
allowed="PICKLE files (.pickle)|.pickle|All files (.*)|")
newParamsFilename = dlgResult
if newParamsFilename is None: # keep going, but don't save
saveParams = False
else:
toFile(newParamsFilename, params) # save it!
# ========================== #
# ===== SET UP LOGGING ===== #
# ========================== #
scriptName = os.path.basename(__file__)
try: # try to get a previous parameters file
expInfo = fromFile('%s-lastExpInfo.pickle'%scriptName)
expInfo['session'] +=1 # automatically increment session number
expInfo['paramsFile'] = [expInfo['paramsFile'],'Load...']
except: # if not there then use a default set
instruct_text.text = instruct_text._start_rec_txt
pen_trace = wintabgraphics.PenTracesStim(myWin, PEN_TRACE_LINE_WIDTH,
PEN_TRACE_LINE_COLOR,
PEN_TRACE_LINE_OPACITY)
pen_pos = wintabgraphics.PenPositionStim(
myWin, PEN_POS_GFX_MIN_OPACITY, PEN_POS_HOVER_COLOR,
PEN_POS_TOUCHING_COLOR, PEN_POS_ANGLE_COLOR, PEN_POS_ANGLE_WIDTH,
PEN_POS_GFX_MIN_SIZE, PEN_POS_GFX_SIZE_RANGE, PEN_POS_TILTLINE_SCALAR)
return evt_text, instruct_text, pen_trace, pen_pos
if __name__ == '__main__':
# Ask for session name / hdf5 file name
save_to = fileSaveDlg(initFilePath=os.path.dirname(__file__),
initFileName=DEFAULT_SESSION_CODE,
prompt="Set Session Output File",
allowed="ioHub Data Files (*.hdf5)|*.hdf5")
myWin = visual.Window(units='pix',
color=DEFAULT_SCREEN_COLOR,
colorSpace='rgb255',
fullscr=True,
allowGUI=False)
# Start iohub process and create shortcut variables to the iohub devices
# used during the experiment.
io = start_iohub(DEFAULT_SESSION_CODE, save_to)
keyboard = io.devices.keyboard
mouse = io.devices.mouse
pen = io.devices.pen
try:
os.mkdir('data')
print("Directory Created!")
except FileExistsError:
print("Directory Exist!")
if info.OK:
save_file_name = 'data/' + show_info[0] + show_info[1] + '_' + \
show_info[2] + '_ep_experiment.csv'
save_file_name_backup = 'data/' + show_info[0] + show_info[1] + '_' + \
show_info[2] + '_backup_orientation.csv'
else:
print("User Cancelled")
# Create Save Path
save_path = gui.fileSaveDlg(initFileName=save_file_name,
prompt='Select Save File')
# Create a Backup file for all orientation in the set
# Refer to the gaborset function
backup_file = open(save_file_name_backup, 'w')
# calibrating monitor and creating window for experiment
mon = monitors.Monitor(monitor_name)
mon.setWidth(screen_width)
mon.setDistance(view_distance)
win = visual.Window(size=screen_resolution,
color='#C0C0C0',
fullscr=True,
monitor=mon,
allowGUI=True)
reps[2].append(repeatNs[2])
reps[3].append(repeatNs[0])
reps[3].append(repeatNs[1])
reps[3].append(repeatNs[2])
for i in range( len( reps ) ):
reps[i] = sorted(reps[i], key = lambda *args: random.random() )
for item in ruleset:
print item
rows.append( (item, reps[item].pop()) )
print rows
#json generation
data = {'set': {'stimpath': setpath, 'blocks':[]}}
for i in rows:
data['set']['blocks'].append( {'rule': i[0], 'reps': i[1]} )
jsontext = json.dumps(data)
print jsontext
saveFile = gui.fileSaveDlg(initFilePath='.'+s+'configs'+s+'sets'+s, allowed='JSON | .json' )
if saveFile:
sf = open( saveFile, 'w' )
sf.write( jsontext )
sf.close()
# clear last screen if testing
if iscodetest:
r = ResponseEmulator([(1, 'space')])
r.start()
task.wait_for_scanner(['space'], 'Finished!')
task.win.close()
# save results to recall.csv inside datadir
namesarray = [subjid, vdate_str(), tasktype, str(timepoint)]
# add runs to output file name if non-standard
if settings['firstrun'] != 1 or \
settings['lastrun'] != nruns_opt[host_tasktype()]:
namesarray.append('runs%d-%d' %
(settings['firstrun'], settings['lastrun']))
namesarray.append('recall-%s_%s.csv' % (imgset, seconds))
csvfilename = "_".join(namesarray)
saveas = os.path.join(datadir, csvfilename)
# save file in data directory. might be read only :(
isSaved = False
while not isSaved:
try:
recall_trials.data.to_csv(saveas)
isSaved = True
except:
saveas = gui.fileSaveDlg(initFilePath='/Users/danielamejia/Desktop/',
initFileName=csvfilename,
prompt=u'Data is readonly, save where?')
print('saved %s' % saveas)
