def toAscii(fileData, mimeType=None, \
maxBinFileSize=pubConf.maxBinFileSize, maxTxtFileSize=pubConf.maxTxtFileSize, \
minTxtFileSize=pubConf.minTxtFileSize):
""" pick out the content from the fileData dictionary,
write it to a local file in tempDir and convert it to
ASCII format. Put output back into the content field.
mimeType will be used if specified, otherwise try to guess
converter based on url file extension
returns fileData if successful, otherwise None
returns only unicode strings (despite the name)
"""
converters = pubConf.getConverters()
tempDir = pubConf.getTempDir()
fileContent = fileData["content"]
fileSize = len(fileContent)
if "locFname" in fileData:
locFname=fileData["locFname"]
fileDebugDesc = fileData["externalId"]+":"+locFname
else:
locFname = None
fileDebugDesc = ",".join([fileData["url"],fileData["desc"],
fileData["fileId"],fileData["articleId"]])
if fileSize > maxBinFileSize:
logging.warn("binary file size before conversion %d > %d, skipping file %s" % \
(len(fileContent), maxBinFileSize, fileDebugDesc))
return None
fileExt = getFileExt(fileData, locFname, mimeType)
if fileExt not in converters:
logging.debug("Could not convert file %s, no converter for extension %s" % \
(fileDebugDesc, fileExt))
return None
cmdLine = converters[fileExt]
if cmdLine=="COPY":
# fileData["content"] already contains ASCII text
pass
elif cmdLine=="XMLTEXT" or cmdLine=="NXMLTEXT":
logging.debug("stripping XML tags")
if cmdLine=="NXMLTEXT":
asciiData = pubXml.stripXmlTags(fileContent, isNxmlFormat=True)
else:
asciiData = pubXml.stripXmlTags(fileContent)
if asciiData==None:
logging.debug("Could not convert xml to ascii, file %s" % fileData["url"])
return None
fileData["content"]=asciiData
else:
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
# try to detect corrupted pdf2text output and run second converter
if fileExt=="pdf" and \
((asciiData==None or len(asciiData)<minTxtFileSize) or countBadChars(asciiData)>=10):
logging.debug("No data or too many non printable characters in PDF, trying alternative program")
cmdLine = converters["pdf2"]
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
if asciiData==None:
logging.info("conversion failed for %s" % fileDebugDesc)
return None
else:
fileData["content"]=removeBadChars(asciiData)
fileData = dictToUnicode(fileData)
if len(fileData["content"]) > maxTxtFileSize:
logging.info("ascii file size after conversion too big, ignoring file %s" % fileDebugDesc)
return None
if len(fileData["content"]) < minTxtFileSize:
logging.debug("ascii file size only %d bytes < %d, ignoring %s" % \
(len(fileData["content"]), minTxtFileSize, fileDebugDesc))
return None
#charSet = set(fileData["content"])
#if len(charSet) < 10:
#logging.warn("too few characters in ASCII output: %s" % charSet)
#return None
return fileData
def toAscii(
fileData,
mimeType=None,
maxBinFileSize=pubConf.maxBinFileSize,
maxTxtFileSize=pubConf.maxTxtFileSize,
minTxtFileSize=pubConf.minTxtFileSize,
):
""" pick out the content from the fileData dictionary,
write it to a local file in tempDir and convert it to
ASCII format. Put output back into the content field
hint specifies where the files come from. can be elsevier or pmc.
mimeType will be used if specified, otherwise try to guess
converter based on url file extension
returns fileData if successful, otherwise None
returns only unicode strings (despite the name)
"""
converters = pubConf.getConverters()
tempDir = pubConf.getTempDir()
fileContent = fileData["content"]
if len(fileContent) > maxBinFileSize:
logging.warn(
"binary file size before conversion %d > %d, skipping file %s"
% (
len(fileContent),
maxBinFileSize,
fileData["url"] + fileData["desc"] + fileData["fileId"] + fileData["articleId"],
)
)
return None
url = fileData["url"]
fileExt = None
if mimeType == None and "mimeType" in fileData and fileData["mimeType"] != None:
mimeType = fileData["mimeType"]
if mimeType:
fileExt = pubConf.MIMEMAP.get(mimeType, None)
logging.debug("File extension determined as %s" % fileExt)
if fileExt == None:
fileExt = os.path.splitext(url)[1].lower().strip(".")
if fileExt not in converters:
logging.debug("Could not convert file %s, no converter for extension %s" % (url, fileExt))
return None
cmdLine = converters[fileExt]
if cmdLine == "COPY":
pass
elif cmdLine == "XMLTEXT" or cmdLine == "NXMLTEXT":
logging.debug("stripping XML tags")
if cmdLine == "NXMLTEXT":
asciiData = pubXml.stripXmlTags(fileContent, isNxmlFormat=True)
else:
asciiData = pubXml.stripXmlTags(fileContent)
if asciiData == None:
logging.warn("Could not convert xml to ascii")
return None
fileData["content"] = asciiData
else:
# logging.verbose("data before conversion is %s" % fileContent)
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
# logging.verbose("Ascii data after conversion is %s" % asciiData)
if fileExt == "pdf" and (asciiData == None or countBadChars(asciiData) >= 10):
logging.debug("No data or too many non printable characters in PDF, trying alternative program")
cmdLine = converters["pdf2"]
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
if asciiData == None:
return None
else:
fileData["content"] = removeBadChars(asciiData)
fileData = dictToUnicode(fileData)
if len(fileData["content"]) > maxTxtFileSize:
logging.warn("ascii file size after conversion too big, ignoring file")
return None
if len(fileData["content"]) < minTxtFileSize:
logging.warn("ascii file size after conversion too small, ignoring file")
return None
# charSet = set(fileData["content"])
# if len(charSet) < 10:
# logging.warn("too few characters in ASCII output: %s" % charSet)
# return None
return fileData
def toAscii(fileData, mimeType=None, \
maxBinFileSize=pubConf.maxBinFileSize, maxTxtFileSize=pubConf.maxTxtFileSize, \
minTxtFileSize=pubConf.minTxtFileSize):
""" pick out the content from the fileData dictionary,
write it to a local file in tempDir and convert it to
ASCII format. Put output back into the content field.
mimeType will be used if specified, otherwise try to guess
converter based on url file extension
returns fileData if successful, otherwise None
returns only unicode strings (despite the name)
"""
converters = pubConf.getConverters()
tempDir = pubConf.getTempDir()
fileContent = fileData["content"]
fileSize = len(fileContent)
if "locFname" in fileData:
locFname = fileData["locFname"]
fileDebugDesc = fileData["externalId"] + ":" + locFname
else:
locFname = None
fileDebugDesc = ",".join([
fileData["url"], fileData["desc"], fileData["fileId"],
fileData["articleId"]
])
if fileSize > maxBinFileSize:
logging.warn("binary file size before conversion %d > %d, skipping file %s" % \
(len(fileContent), maxBinFileSize, fileDebugDesc))
return None
fileExt = getFileExt(fileData, locFname, mimeType)
if fileExt not in converters:
logging.debug("Could not convert file %s, no converter for extension %s" % \
(fileDebugDesc, fileExt))
return None
cmdLine = converters[fileExt]
if cmdLine == "COPY":
# fileData["content"] already contains ASCII text
pass
elif cmdLine == "XMLTEXT" or cmdLine == "NXMLTEXT":
logging.debug("stripping XML tags")
if cmdLine == "NXMLTEXT":
asciiData = pubXml.stripXmlTags(fileContent, isNxmlFormat=True)
else:
asciiData = pubXml.stripXmlTags(fileContent)
if asciiData == None:
logging.debug("Could not convert xml to ascii, file %s" %
fileData["url"])
return None
fileData["content"] = asciiData
else:
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
# try to detect corrupted pdf2text output and run second converter
if fileExt=="pdf" and \
((asciiData==None or len(asciiData)<minTxtFileSize) or countBadChars(asciiData)>=10):
logging.debug(
"No data or too many non printable characters in PDF, trying alternative program"
)
cmdLine = converters["pdf2"]
asciiData = runConverter(cmdLine, fileContent, fileExt, tempDir)
if asciiData == None:
logging.info("conversion failed for %s" % fileDebugDesc)
return None
else:
fileData["content"] = removeBadChars(asciiData)
fileData = dictToUnicode(fileData)
if len(fileData["content"]) > maxTxtFileSize:
logging.info(
"ascii file size after conversion too big, ignoring file %s" %
fileDebugDesc)
return None
if len(fileData["content"]) < minTxtFileSize:
logging.debug("ascii file size only %d bytes < %d, ignoring %s" % \
(len(fileData["content"]), minTxtFileSize, fileDebugDesc))
return None
#charSet = set(fileData["content"])
#if len(charSet) < 10:
#logging.warn("too few characters in ASCII output: %s" % charSet)
#return None
return fileData
