Example #1
0
File: eye.py Project: r0bert0/pupil
def eye(g_pool,cap_src,cap_size):
    """
    Creates a window, gl context.
    Grabs images from a capture.
    Streams Pupil coordinates into g_pool.pupil_queue
    """

    # modify the root logger for this process
    logger = logging.getLogger()
    # remove inherited handlers
    logger.handlers = []
    # create file handler which logs even debug messages
    fh = logging.FileHandler(os.path.join(g_pool.user_dir,'eye.log'),mode='w')
    fh.setLevel(logging.DEBUG)
    # create console handler with a higher log level
    ch = logging.StreamHandler()
    ch.setLevel(logging.WARNING)
    # create formatter and add it to the handlers
    formatter = logging.Formatter('EYE Process: %(asctime)s - %(name)s - %(levelname)s - %(message)s')
    fh.setFormatter(formatter)
    formatter = logging.Formatter('E Y E Process [%(levelname)s] %(name)s : %(message)s')
    ch.setFormatter(formatter)
    # add the handlers to the logger
    logger.addHandler(fh)
    logger.addHandler(ch)
    # create logger for the context of this function
    logger = logging.getLogger(__name__)


    # Callback functions
    def on_resize(window,w, h):
        adjust_gl_view(w,h,window)
        norm_size = normalize((w,h),glfwGetWindowSize(window))
        fb_size = denormalize(norm_size,glfwGetFramebufferSize(window))
        atb.TwWindowSize(*map(int,fb_size))


    def on_key(window, key, scancode, action, mods):
        if not atb.TwEventKeyboardGLFW(key,int(action == GLFW_PRESS)):
            if action == GLFW_PRESS:
                if key == GLFW_KEY_ESCAPE:
                    on_close(window)

    def on_char(window,char):
        if not atb.TwEventCharGLFW(char,1):
            pass

    def on_button(window,button, action, mods):
        if not atb.TwEventMouseButtonGLFW(button,int(action == GLFW_PRESS)):
            if action == GLFW_PRESS:
                pos = glfwGetCursorPos(window)
                pos = normalize(pos,glfwGetWindowSize(window))
                pos = denormalize(pos,(frame.img.shape[1],frame.img.shape[0]) ) # pos in frame.img pixels
                u_r.setStart(pos)
                bar.draw_roi.value = 1
            else:
                bar.draw_roi.value = 0

    def on_pos(window,x, y):
        norm_pos = normalize((x,y),glfwGetWindowSize(window))
        fb_x,fb_y = denormalize(norm_pos,glfwGetFramebufferSize(window))
        if atb.TwMouseMotion(int(fb_x),int(fb_y)):
            pass

        if bar.draw_roi.value == 1:
            pos = denormalize(norm_pos,(frame.img.shape[1],frame.img.shape[0]) ) # pos in frame.img pixels
            u_r.setEnd(pos)

    def on_scroll(window,x,y):
        if not atb.TwMouseWheel(int(x)):
            pass

    def on_close(window):
        g_pool.quit.value = True
        logger.info('Process closing from window')


    # Helper functions called by the main atb bar
    def start_roi():
        bar.display.value = 1
        bar.draw_roi.value = 2

    def update_fps():
        old_time, bar.timestamp = bar.timestamp, time()
        dt = bar.timestamp - old_time
        if dt:
            bar.fps.value += .05 * (1. / dt - bar.fps.value)
            bar.dt.value = dt

    def get_from_data(data):
        """
        helper for atb getter and setter use
        """
        return data.value


    # load session persistent settings
    session_settings = shelve.open(os.path.join(g_pool.user_dir,'user_settings_eye'),protocol=2)
    def load(var_name,default):
        return session_settings.get(var_name,default)
    def save(var_name,var):
        session_settings[var_name] = var

    # Initialize capture
    cap = autoCreateCapture(cap_src, cap_size,timebase=g_pool.timebase)

    if cap is None:
        logger.error("Did not receive valid Capture")
        return
    # check if it works
    frame = cap.get_frame()
    if frame.img is None:
        logger.error("Could not retrieve image from capture")
        cap.close()
        return
    height,width = frame.img.shape[:2]

    u_r = Roi(frame.img.shape)
    u_r.set(load('roi',default=None))

    writer = None

    pupil_detector = Canny_Detector(g_pool)

    atb.init()
    # Create main ATB Controls
    bar = atb.Bar(name = "Eye", label="Display",
            help="Scene controls", color=(50, 50, 50), alpha=100,
            text='light', position=(10, 10),refresh=.3, size=(200, 100))
    bar.fps = c_float(0.0)
    bar.timestamp = time()
    bar.dt = c_float(0.0)
    bar.sleep = c_float(0.0)
    bar.display = c_int(load('bar.display',0))
    bar.draw_pupil = c_bool(load('bar.draw_pupil',True))
    bar.draw_roi = c_int(0)

    dispay_mode_enum = atb.enum("Mode",{"Camera Image":0,
                                        "Region of Interest":1,
                                        "Algorithm":2,
                                        "CPU Save": 3})

    bar.add_var("FPS",bar.fps, step=1.,readonly=True)
    bar.add_var("Mode", bar.display,vtype=dispay_mode_enum, help="select the view-mode")
    bar.add_var("Show_Pupil_Point", bar.draw_pupil)
    bar.add_button("Draw_ROI", start_roi, help="drag on screen to select a region of interest")

    bar.add_var("SlowDown",bar.sleep, step=0.01,min=0.0)
    bar.add_var("SaveSettings&Exit", g_pool.quit)

    cap.create_atb_bar(pos=(220,10))

    # create a bar for the detector
    pupil_detector.create_atb_bar(pos=(10,120))


    glfwInit()
    window = glfwCreateWindow(width, height, "Eye", None, None)
    glfwMakeContextCurrent(window)

    # Register callbacks window
    glfwSetWindowSizeCallback(window,on_resize)
    glfwSetWindowCloseCallback(window,on_close)
    glfwSetKeyCallback(window,on_key)
    glfwSetCharCallback(window,on_char)
    glfwSetMouseButtonCallback(window,on_button)
    glfwSetCursorPosCallback(window,on_pos)
    glfwSetScrollCallback(window,on_scroll)

    glfwSetWindowPos(window,800,0)
    on_resize(window,width,height)

    # gl_state settings
    basic_gl_setup()

    # refresh speed settings
    glfwSwapInterval(0)


    # event loop
    while not g_pool.quit.value:
        # Get an image from the grabber
        try:
            frame = cap.get_frame()
        except CameraCaptureError:
            logger.error("Capture from Camera Failed. Stopping.")
            break
        except EndofVideoFileError:
            logger.warning("Video File is done. Stopping")
            break

        update_fps()
        sleep(bar.sleep.value) # for debugging only


        ###  RECORDING of Eye Video (on demand) ###
        # Setup variables and lists for recording
        if g_pool.eye_rx.poll():
            command = g_pool.eye_rx.recv()
            if command is not None:
                record_path = command
                logger.info("Will save eye video to: %s"%record_path)
                video_path = os.path.join(record_path, "eye.avi")
                timestamps_path = os.path.join(record_path, "eye_timestamps.npy")
                writer = cv2.VideoWriter(video_path, cv2.cv.CV_FOURCC(*'DIVX'), bar.fps.value, (frame.img.shape[1], frame.img.shape[0]))
                timestamps = []
            else:
                logger.info("Done recording eye.")
                writer = None
                np.save(timestamps_path,np.asarray(timestamps))
                del timestamps

        if writer:
            writer.write(frame.img)
            timestamps.append(frame.timestamp)


        # pupil ellipse detection
        result = pupil_detector.detect(frame,user_roi=u_r,visualize=bar.display.value == 2)
        # stream the result
        g_pool.pupil_queue.put(result)

        # VISUALIZATION direct visualizations on the frame.img data
        if bar.display.value == 1:
            # and a solid (white) frame around the user defined ROI
            r_img = frame.img[u_r.lY:u_r.uY,u_r.lX:u_r.uX]
            r_img[:,0] = 255,255,255
            r_img[:,-1]= 255,255,255
            r_img[0,:] = 255,255,255
            r_img[-1,:]= 255,255,255



        # GL-drawing
        clear_gl_screen()
        draw_gl_texture(frame.img,update=bar.display.value != 3)

        if result['norm_pupil'] is not None and bar.draw_pupil.value:
            if result.has_key('axes'):
                pts = cv2.ellipse2Poly( (int(result['center'][0]),int(result['center'][1])),
                                        (int(result["axes"][0]/2),int(result["axes"][1]/2)),
                                        int(result["angle"]),0,360,15)
                draw_gl_polyline(pts,(1.,0,0,.5))
            draw_gl_point_norm(result['norm_pupil'],color=(1.,0.,0.,0.5))

        atb.draw()
        glfwSwapBuffers(window)
        glfwPollEvents()

    # END while running

    # in case eye reconding was still runnnig: Save&close
    if writer:
        logger.info("Done recording eye.")
        writer = None
        np.save(timestamps_path,np.asarray(timestamps))


    # save session persistent settings
    save('roi',u_r.get())
    save('bar.display',bar.display.value)
    save('bar.draw_pupil',bar.draw_pupil.value)
    session_settings.close()

    pupil_detector.cleanup()
    cap.close()
    atb.terminate()
    glfwDestroyWindow(window)
    glfwTerminate()

    #flushing queue incase world process did not exit gracefully
    while not g_pool.pupil_queue.empty():
        g_pool.pupil_queue.get()
    g_pool.pupil_queue.close()

    logger.debug("Process done")
Example #2
0
def eye(g_pool,cap_src,cap_size,rx_from_world,eye_id=0):
    """
    Creates a window, gl context.
    Grabs images from a capture.
    Streams Pupil coordinates into g_pool.pupil_queue
    """

    # modify the root logger for this process
    logger = logging.getLogger()
    # remove inherited handlers
    logger.handlers = []
    # create file handler which logs even debug messages
    fh = logging.FileHandler(os.path.join(g_pool.user_dir,'eye%s.log'%eye_id),mode='w')
    # fh.setLevel(logging.DEBUG)
    # create console handler with a higher log level
    ch = logging.StreamHandler()
    ch.setLevel(logger.level+10)
    # create formatter and add it to the handlers
    formatter = logging.Formatter('Eye'+str(eye_id)+' Process: %(asctime)s - %(name)s - %(levelname)s - %(message)s')
    fh.setFormatter(formatter)
    formatter = logging.Formatter('EYE'+str(eye_id)+' Process [%(levelname)s] %(name)s : %(message)s')
    ch.setFormatter(formatter)
    # add the handlers to the logger
    logger.addHandler(fh)
    logger.addHandler(ch)
    # create logger for the context of this function
    logger = logging.getLogger(__name__)


    #UI Platform tweaks
    if platform.system() == 'Linux':
        scroll_factor = 10.0
        window_position_default = (600,300*eye_id)
    elif platform.system() == 'Windows':
        scroll_factor = 1.0
        window_position_default = (600,31+300*eye_id)
    else:
        scroll_factor = 1.0
        window_position_default = (600,300*eye_id)


    # Callback functions
    def on_resize(window,w, h):
        active_window = glfwGetCurrentContext()
        glfwMakeContextCurrent(window)
        hdpi_factor = glfwGetFramebufferSize(window)[0]/glfwGetWindowSize(window)[0]
        w,h = w*hdpi_factor, h*hdpi_factor
        g_pool.gui.update_window(w,h)
        graph.adjust_size(w,h)
        adjust_gl_view(w,h)
        # for p in g_pool.plugins:
            # p.on_window_resize(window,w,h)
        glfwMakeContextCurrent(active_window)

    def on_key(window, key, scancode, action, mods):
        g_pool.gui.update_key(key,scancode,action,mods)


    def on_char(window,char):
        g_pool.gui.update_char(char)


    def on_button(window,button, action, mods):
        if g_pool.display_mode == 'roi':
            if action == GLFW_RELEASE and u_r.active_edit_pt:
                u_r.active_edit_pt = False
                return # if the roi interacts we dont what the gui to interact as well
            elif action == GLFW_PRESS:
                pos = glfwGetCursorPos(window)
                pos = normalize(pos,glfwGetWindowSize(main_window))
                if g_pool.flip:
                    pos = 1-pos[0],1-pos[1]
                pos = denormalize(pos,(frame.width,frame.height)) # Position in img pixels
                if u_r.mouse_over_edit_pt(pos,u_r.handle_size+40,u_r.handle_size+40):
                    return # if the roi interacts we dont what the gui to interact as well

        g_pool.gui.update_button(button,action,mods)



    def on_pos(window,x, y):
        hdpi_factor = float(glfwGetFramebufferSize(window)[0]/glfwGetWindowSize(window)[0])
        g_pool.gui.update_mouse(x*hdpi_factor,y*hdpi_factor)

        if u_r.active_edit_pt:
            pos = normalize((x,y),glfwGetWindowSize(main_window))
            if g_pool.flip:
                pos = 1-pos[0],1-pos[1]
            pos = denormalize(pos,(frame.width,frame.height) )
            u_r.move_vertex(u_r.active_pt_idx,pos)

    def on_scroll(window,x,y):
        g_pool.gui.update_scroll(x,y*scroll_factor)

    def on_close(window):
        g_pool.quit.value = True
        logger.info('Process closing from window')


    # load session persistent settings
    session_settings = Persistent_Dict(os.path.join(g_pool.user_dir,'user_settings_eye%s'%eye_id))
    if session_settings.get("version",VersionFormat('0.0')) < g_pool.version:
        logger.info("Session setting are from older version of this app. I will not use those.")
        session_settings.clear()
    # Initialize capture
    cap = autoCreateCapture(cap_src, timebase=g_pool.timebase)
    cap.frame_size = cap_size
    cap.frame_rate = 90 #default
    cap.settings = session_settings.get('capture_settings',{})


    # Test capture
    try:
        frame = cap.get_frame()
    except CameraCaptureError:
        logger.error("Could not retrieve image from capture")
        cap.close()
        return

    g_pool.capture = cap
    g_pool.flip = session_settings.get('flip',False)
    # any object we attach to the g_pool object *from now on* will only be visible to this process!
    # vars should be declared here to make them visible to the code reader.
    g_pool.window_size = session_settings.get('window_size',1.)
    g_pool.display_mode = session_settings.get('display_mode','camera_image')
    g_pool.display_mode_info_text = {'camera_image': "Raw eye camera image. This uses the least amount of CPU power",
                                'roi': "Click and drag on the blue circles to adjust the region of interest. The region should be a small as possible but big enough to capture to pupil in its movements",
                                'algorithm': "Algorithm display mode overlays a visualization of the pupil detection parameters on top of the eye video. Adjust parameters with in the Pupil Detection menu below."}
    # g_pool.draw_pupil = session_settings.get('draw_pupil',True)

    u_r = UIRoi(frame.img.shape)
    u_r.set(session_settings.get('roi',u_r.get()))

    writer = None

    pupil_detector = Canny_Detector(g_pool)


    # UI callback functions
    def set_scale(new_scale):
        g_pool.gui.scale = new_scale
        g_pool.gui.collect_menus()


    def set_display_mode_info(val):
        g_pool.display_mode = val
        g_pool.display_mode_info.text = g_pool.display_mode_info_text[val]


    window_pos = session_settings.get('window_position',window_position_default)
    width,height = session_settings.get('window_size',(frame.width, frame.height))

    # Initialize glfw
    glfwInit()
    if g_pool.binocular:
        title = "Binocular eye %s"%eye_id
    else:
        title = 'Eye'
    main_window = glfwCreateWindow(width,height, title, None, None)

    glfwMakeContextCurrent(main_window)
    cygl_init()

    # Register callbacks main_window
    glfwSetWindowSizeCallback(main_window,on_resize)
    glfwSetWindowCloseCallback(main_window,on_close)
    glfwSetKeyCallback(main_window,on_key)
    glfwSetCharCallback(main_window,on_char)
    glfwSetMouseButtonCallback(main_window,on_button)
    glfwSetCursorPosCallback(main_window,on_pos)
    glfwSetScrollCallback(main_window,on_scroll)

    # gl_state settings
    basic_gl_setup()
    g_pool.image_tex = create_named_texture(frame.img.shape)
    update_named_texture(g_pool.image_tex,frame.img)

    # refresh speed settings
    glfwSwapInterval(0)
    glfwSetWindowPos(main_window,window_pos[0],window_pos[1])


    #setup GUI
    g_pool.gui = ui.UI()
    g_pool.gui.scale = session_settings.get('gui_scale',1)
    g_pool.sidebar = ui.Scrolling_Menu("Settings",pos=(-300,0),size=(0,0),header_pos='left')
    general_settings = ui.Growing_Menu('General')
    general_settings.append(ui.Slider('scale',g_pool.gui, setter=set_scale,step = .05,min=1.,max=2.5,label='Interface Size'))
    general_settings.append(ui.Button('Reset window size',lambda: glfwSetWindowSize(main_window,frame.width,frame.height)) )
    general_settings.append(ui.Selector('display_mode',g_pool,setter=set_display_mode_info,selection=['camera_image','roi','algorithm'], labels=['Camera Image', 'ROI', 'Algorithm'], label="Mode") )
    general_settings.append(ui.Switch('flip',g_pool,label='Flip image display'))
    g_pool.display_mode_info = ui.Info_Text(g_pool.display_mode_info_text[g_pool.display_mode])
    general_settings.append(g_pool.display_mode_info)
    g_pool.sidebar.append(general_settings)

    g_pool.gui.append(g_pool.sidebar)
    g_pool.gui.append(ui.Hot_Key("quit",setter=on_close,getter=lambda:True,label="X",hotkey=GLFW_KEY_ESCAPE))


    # let the camera add its GUI
    g_pool.capture.init_gui(g_pool.sidebar)

    # let detector add its GUI
    pupil_detector.init_gui(g_pool.sidebar)

    # load last gui configuration
    g_pool.gui.configuration = session_settings.get('ui_config',{})


    #set the last saved window size
    on_resize(main_window, *glfwGetWindowSize(main_window))

    #set up performance graphs
    pid = os.getpid()
    ps = psutil.Process(pid)
    ts = frame.timestamp

    cpu_graph = graph.Bar_Graph()
    cpu_graph.pos = (20,130)
    cpu_graph.update_fn = ps.cpu_percent
    cpu_graph.update_rate = 5
    cpu_graph.label = 'CPU %0.1f'

    fps_graph = graph.Bar_Graph()
    fps_graph.pos = (140,130)
    fps_graph.update_rate = 5
    fps_graph.label = "%0.0f FPS"

    # Event loop
    while not g_pool.quit.value:
        # Get an image from the grabber
        try:
            frame = cap.get_frame()
        except CameraCaptureError:
            logger.error("Capture from Camera Failed. Stopping.")
            break
        except EndofVideoFileError:
            logger.warning("Video File is done. Stopping")
            break


        #update performace graphs
        t = frame.timestamp
        dt,ts = t-ts,t
        try:
            fps_graph.add(1./dt)
        except ZeroDivisionError:
            pass
        cpu_graph.update()


        ###  RECORDING of Eye Video (on demand) ###
        # Setup variables and lists for recording
        if rx_from_world.poll():
            command,raw_mode = rx_from_world.recv()
            if command is not None:
                record_path = command
                logger.info("Will save eye video to: %s"%record_path)
                video_path = os.path.join(record_path, "eye%s.mkv"%eye_id)
                timestamps_path = os.path.join(record_path, "eye%s_timestamps.npy"%eye_id)
                if raw_mode:
                    writer = JPEG_Dumper(video_path)
                else:
                    writer = CV_Writer(video_path,float(cap.frame_rate), cap.frame_size)
                timestamps = []
            else:
                logger.info("Done recording.")
                writer.release()
                writer = None
                np.save(timestamps_path,np.asarray(timestamps))
                del timestamps

        if writer:
            writer.write_video_frame(frame)
            timestamps.append(frame.timestamp)


        # pupil ellipse detection
        result = pupil_detector.detect(frame,user_roi=u_r,visualize=g_pool.display_mode == 'algorithm')
        result['id'] = eye_id
        # stream the result
        g_pool.pupil_queue.put(result)


        # GL drawing
        glfwMakeContextCurrent(main_window)
        clear_gl_screen()

        # switch to work in normalized coordinate space
        if g_pool.display_mode == 'algorithm':
            update_named_texture(g_pool.image_tex,frame.img)
        elif g_pool.display_mode in ('camera_image','roi'):
            update_named_texture(g_pool.image_tex,frame.gray)
        else:
            pass

        make_coord_system_norm_based(g_pool.flip)
        draw_named_texture(g_pool.image_tex)
        # switch to work in pixel space
        make_coord_system_pixel_based((frame.height,frame.width,3),g_pool.flip)

        if result['confidence'] >0:
            if result.has_key('axes'):
                pts = cv2.ellipse2Poly( (int(result['center'][0]),int(result['center'][1])),
                                        (int(result['axes'][0]/2),int(result['axes'][1]/2)),
                                        int(result['angle']),0,360,15)
                cygl_draw_polyline(pts,1,cygl_rgba(1.,0,0,.5))
            cygl_draw_points([result['center']],size=20,color=cygl_rgba(1.,0.,0.,.5),sharpness=1.)

        # render graphs
        graph.push_view()
        fps_graph.draw()
        cpu_graph.draw()
        graph.pop_view()

        # render GUI
        g_pool.gui.update()

        #render the ROI
        if g_pool.display_mode == 'roi':
            u_r.draw(g_pool.gui.scale)

        #update screen
        glfwSwapBuffers(main_window)
        glfwPollEvents()


    # END while running

    # in case eye recording was still runnnig: Save&close
    if writer:
        logger.info("Done recording eye.")
        writer = None
        np.save(timestamps_path,np.asarray(timestamps))


    # save session persistent settings
    session_settings['gui_scale'] = g_pool.gui.scale
    session_settings['roi'] = u_r.get()
    session_settings['flip'] = g_pool.flip
    session_settings['display_mode'] = g_pool.display_mode
    session_settings['ui_config'] = g_pool.gui.configuration
    session_settings['capture_settings'] = g_pool.capture.settings
    session_settings['window_size'] = glfwGetWindowSize(main_window)
    session_settings['window_position'] = glfwGetWindowPos(main_window)
    session_settings['version'] = g_pool.version
    session_settings.close()

    pupil_detector.cleanup()
    glfwDestroyWindow(main_window)
    glfwTerminate()
    cap.close()

    #flushing queue in case world process did not exit gracefully
    while not g_pool.pupil_queue.empty():
        g_pool.pupil_queue.get()
    g_pool.pupil_queue.close()

    logger.debug("Process done")
Example #3
0
def eye(g_pool, cap_src, cap_size):
    """
    Creates a window, gl context.
    Grabs images from a capture.
    Streams Pupil coordinates into g_pool.pupil_queue
    """

    # modify the root logger for this process
    logger = logging.getLogger()
    # remove inherited handlers
    logger.handlers = []
    # create file handler which logs even debug messages
    fh = logging.FileHandler(os.path.join(g_pool.user_dir, 'eye.log'),
                             mode='w')
    fh.setLevel(logging.INFO)
    # create console handler with a higher log level
    ch = logging.StreamHandler()
    ch.setLevel(logging.WARNING)
    # create formatter and add it to the handlers
    formatter = logging.Formatter(
        'EYE Process: %(asctime)s - %(name)s - %(levelname)s - %(message)s')
    fh.setFormatter(formatter)
    formatter = logging.Formatter(
        'E Y E Process [%(levelname)s] %(name)s : %(message)s')
    ch.setFormatter(formatter)
    # add the handlers to the logger
    logger.addHandler(fh)
    logger.addHandler(ch)
    # create logger for the context of this function
    logger = logging.getLogger(__name__)

    # Callback functions
    def on_resize(window, w, h):
        adjust_gl_view(w, h)
        atb.TwWindowSize(w, h)

    def on_key(window, key, scancode, action, mods):
        if not atb.TwEventKeyboardGLFW(key, int(action == GLFW_PRESS)):
            if action == GLFW_PRESS:
                if key == GLFW_KEY_ESCAPE:
                    on_close(window)

    def on_char(window, char):
        if not atb.TwEventCharGLFW(char, 1):
            pass

    def on_button(window, button, action, mods):
        if not atb.TwEventMouseButtonGLFW(button, int(action == GLFW_PRESS)):
            if action == GLFW_PRESS:
                pos = glfwGetCursorPos(window)
                pos = normalize(pos, glfwGetWindowSize(window))
                pos = denormalize(
                    pos, (frame.img.shape[1],
                          frame.img.shape[0]))  # pos in frame.img pixels
                u_r.setStart(pos)
                bar.draw_roi.value = 1
            else:
                bar.draw_roi.value = 0

    def on_pos(window, x, y):
        if atb.TwMouseMotion(int(x), int(y)):
            pass
        if bar.draw_roi.value == 1:
            pos = x, y
            pos = normalize(pos, glfwGetWindowSize(window))
            pos = denormalize(pos,
                              (frame.img.shape[1],
                               frame.img.shape[0]))  # pos in frame.img pixels
            u_r.setEnd(pos)

    def on_scroll(window, x, y):
        if not atb.TwMouseWheel(int(x)):
            pass

    def on_close(window):
        g_pool.quit.value = True
        logger.info('Process closing from window')

    # Helper functions called by the main atb bar
    def start_roi():
        bar.display.value = 1
        bar.draw_roi.value = 2

    def update_fps():
        old_time, bar.timestamp = bar.timestamp, time()
        dt = bar.timestamp - old_time
        if dt:
            bar.fps.value += .05 * (1. / dt - bar.fps.value)
            bar.dt.value = dt

    def get_from_data(data):
        """
        helper for atb getter and setter use
        """
        return data.value

    # load session persistent settings
    session_settings = shelve.open(os.path.join(g_pool.user_dir,
                                                'user_settings_eye'),
                                   protocol=2)

    def load(var_name, default):
        return session_settings.get(var_name, default)

    def save(var_name, var):
        session_settings[var_name] = var

    # Initialize capture
    cap = autoCreateCapture(cap_src, cap_size)

    if cap is None:
        logger.error("Did not receive valid Capture")
        return
    # check if it works
    frame = cap.get_frame()
    if frame.img is None:
        logger.error("Could not retrieve image from capture")
        cap.close()
        return
    height, width = frame.img.shape[:2]
    cap.auto_rewind = False

    u_r = Roi(frame.img.shape)
    u_r.set(load('roi', default=None))

    writer = None

    pupil_detector = Canny_Detector(g_pool)

    atb.init()
    # Create main ATB Controls
    bar = atb.Bar(name="Eye",
                  label="Display",
                  help="Scene controls",
                  color=(50, 50, 50),
                  alpha=100,
                  text='light',
                  position=(10, 10),
                  refresh=.3,
                  size=(200, 100))
    bar.fps = c_float(0.0)
    bar.timestamp = time()
    bar.dt = c_float(0.0)
    bar.sleep = c_float(0.0)
    bar.display = c_int(load('bar.display', 0))
    bar.draw_pupil = c_bool(load('bar.draw_pupil', True))
    bar.draw_roi = c_int(0)

    dispay_mode_enum = atb.enum("Mode", {
        "Camera Image": 0,
        "Region of Interest": 1,
        "Algorithm": 2
    })

    bar.add_var("FPS", bar.fps, step=1., readonly=True)
    bar.add_var("Mode",
                bar.display,
                vtype=dispay_mode_enum,
                help="select the view-mode")
    bar.add_var("Show_Pupil_Point", bar.draw_pupil)
    bar.add_button("Draw_ROI",
                   start_roi,
                   help="drag on screen to select a region of interest")

    bar.add_var("SlowDown", bar.sleep, step=0.01, min=0.0)
    bar.add_var("SaveSettings&Exit", g_pool.quit)

    cap.create_atb_bar(pos=(220, 10))

    # create a bar for the detector
    pupil_detector.create_atb_bar(pos=(10, 120))

    glfwInit()
    window = glfwCreateWindow(width, height, "Eye", None, None)
    glfwMakeContextCurrent(window)

    # Register callbacks window
    glfwSetWindowSizeCallback(window, on_resize)
    glfwSetWindowCloseCallback(window, on_close)
    glfwSetKeyCallback(window, on_key)
    glfwSetCharCallback(window, on_char)
    glfwSetMouseButtonCallback(window, on_button)
    glfwSetCursorPosCallback(window, on_pos)
    glfwSetScrollCallback(window, on_scroll)

    glfwSetWindowPos(window, 800, 0)
    on_resize(window, width, height)

    # gl_state settings
    basic_gl_setup()

    # refresh speed settings
    glfwSwapInterval(0)

    # event loop
    while not g_pool.quit.value:
        frame = cap.get_frame()
        if frame.img is None:
            break
        update_fps()
        sleep(bar.sleep.value)  # for debugging only

        if pupil_detector.should_sleep:
            sleep(16)
            pupil_detector.should_sleep = False

        ###  RECORDING of Eye Video (on demand) ###
        # Setup variables and lists for recording
        if g_pool.eye_rx.poll():
            command = g_pool.eye_rx.recv()
            if command is not None:
                record_path = command
                logger.info("Will save eye video to: %(record_path)s")
                video_path = os.path.join(record_path, "eye.avi")
                timestamps_path = os.path.join(record_path,
                                               "eye_timestamps.npy")
                writer = cv2.VideoWriter(
                    video_path, cv2.cv.CV_FOURCC(*'DIVX'), bar.fps.value,
                    (frame.img.shape[1], frame.img.shape[0]))
                timestamps = []
            else:
                logger.info("Done recording eye.")
                writer = None
                np.save(timestamps_path, np.asarray(timestamps))
                del timestamps

        if writer:
            writer.write(frame.img)
            timestamps.append(frame.timestamp)

        # pupil ellipse detection
        result = pupil_detector.detect(frame,
                                       user_roi=u_r,
                                       visualize=bar.display.value == 2)
        # stream the result
        g_pool.pupil_queue.put(result)

        # VISUALIZATION direct visualizations on the frame.img data
        if bar.display.value == 1:
            # and a solid (white) frame around the user defined ROI
            r_img = frame.img[u_r.lY:u_r.uY, u_r.lX:u_r.uX]
            r_img[:, 0] = 255, 255, 255
            r_img[:, -1] = 255, 255, 255
            r_img[0, :] = 255, 255, 255
            r_img[-1, :] = 255, 255, 255

        # GL-drawing
        clear_gl_screen()
        draw_gl_texture(frame.img)

        if result['norm_pupil'] is not None and bar.draw_pupil.value:
            if result.has_key('axes'):
                pts = cv2.ellipse2Poly(
                    (int(result['center'][0]), int(result['center'][1])),
                    (int(result["axes"][0] / 2), int(result["axes"][1] / 2)),
                    int(result["angle"]), 0, 360, 15)
                draw_gl_polyline(pts, (1., 0, 0, .5))
            draw_gl_point_norm(result['norm_pupil'], color=(1., 0., 0., 0.5))

        atb.draw()
        glfwSwapBuffers(window)
        glfwPollEvents()

    # END while running

    # in case eye reconding was still runnnig: Save&close
    if writer:
        logger.info("Done recording eye.")
        writer = None
        np.save(timestamps_path, np.asarray(timestamps))

    # save session persistent settings
    save('roi', u_r.get())
    save('bar.display', bar.display.value)
    save('bar.draw_pupil', bar.draw_pupil.value)
    session_settings.close()

    pupil_detector.cleanup()
    cap.close()
    atb.terminate()
    glfwDestroyWindow(window)
    glfwTerminate()

    #flushing queue incase world process did not exit gracefully
    while not g_pool.pupil_queue.empty():
        g_pool.pupil_queue.get()
    g_pool.pupil_queue.close()

    logger.debug("Process done")
Example #4
0
def eye(g_pool, cap_src, cap_size, pipe_to_world, eye_id=0):
    """
    Creates a window, gl context.
    Grabs images from a capture.
    Streams Pupil coordinates into g_pool.pupil_queue
    """

    # modify the root logger for this process
    logger = logging.getLogger()
    # remove inherited handlers
    logger.handlers = []
    # create file handler which logs even debug messages
    fh = logging.FileHandler(os.path.join(g_pool.user_dir,
                                          'eye%s.log' % eye_id),
                             mode='w')
    # fh.setLevel(logging.DEBUG)
    # create console handler with a higher log level
    ch = logging.StreamHandler()
    ch.setLevel(logger.level + 10)
    # create formatter and add it to the handlers
    formatter = logging.Formatter(
        'Eye' + str(eye_id) +
        ' Process: %(asctime)s - %(name)s - %(levelname)s - %(message)s')
    fh.setFormatter(formatter)
    formatter = logging.Formatter(
        'EYE' + str(eye_id) +
        ' Process [%(levelname)s] %(name)s : %(message)s')
    ch.setFormatter(formatter)
    # add the handlers to the logger
    logger.addHandler(fh)
    logger.addHandler(ch)
    # create logger for the context of this function
    logger = logging.getLogger(__name__)

    #UI Platform tweaks
    if platform.system() == 'Linux':
        scroll_factor = 10.0
        window_position_default = (600, 300 * eye_id)
    elif platform.system() == 'Windows':
        scroll_factor = 1.0
        window_position_default = (600, 31 + 300 * eye_id)
    else:
        scroll_factor = 1.0
        window_position_default = (600, 300 * eye_id)

    # Callback functions
    def on_resize(window, w, h):
        if not g_pool.iconified:
            active_window = glfwGetCurrentContext()
            glfwMakeContextCurrent(window)
            g_pool.gui.update_window(w, h)
            graph.adjust_size(w, h)
            adjust_gl_view(w, h)
            glfwMakeContextCurrent(active_window)

    def on_key(window, key, scancode, action, mods):
        g_pool.gui.update_key(key, scancode, action, mods)

    def on_char(window, char):
        g_pool.gui.update_char(char)

    def on_iconify(window, iconified):
        g_pool.iconified = iconified

    def on_button(window, button, action, mods):
        if g_pool.display_mode == 'roi':
            if action == GLFW_RELEASE and u_r.active_edit_pt:
                u_r.active_edit_pt = False
                return  # if the roi interacts we dont what the gui to interact as well
            elif action == GLFW_PRESS:
                pos = glfwGetCursorPos(window)
                pos = normalize(pos, glfwGetWindowSize(main_window))
                if g_pool.flip:
                    pos = 1 - pos[0], 1 - pos[1]
                pos = denormalize(
                    pos, (frame.width, frame.height))  # Position in img pixels
                if u_r.mouse_over_edit_pt(pos, u_r.handle_size + 40,
                                          u_r.handle_size + 40):
                    return  # if the roi interacts we dont what the gui to interact as well

        g_pool.gui.update_button(button, action, mods)

    def on_pos(window, x, y):
        hdpi_factor = float(
            glfwGetFramebufferSize(window)[0] / glfwGetWindowSize(window)[0])
        g_pool.gui.update_mouse(x * hdpi_factor, y * hdpi_factor)

        if u_r.active_edit_pt:
            pos = normalize((x, y), glfwGetWindowSize(main_window))
            if g_pool.flip:
                pos = 1 - pos[0], 1 - pos[1]
            pos = denormalize(pos, (frame.width, frame.height))
            u_r.move_vertex(u_r.active_pt_idx, pos)

    def on_scroll(window, x, y):
        g_pool.gui.update_scroll(x, y * scroll_factor)

    def on_close(window):
        g_pool.quit.value = True
        logger.info('Process closing from window')

    # load session persistent settings
    session_settings = Persistent_Dict(
        os.path.join(g_pool.user_dir, 'user_settings_eye%s' % eye_id))
    if session_settings.get("version", VersionFormat('0.0')) < g_pool.version:
        logger.info(
            "Session setting are from older version of this app. I will not use those."
        )
        session_settings.clear()
    # Initialize capture
    cap = autoCreateCapture(cap_src, timebase=g_pool.timebase)
    default_settings = {'frame_size': cap_size, 'frame_rate': 30}
    previous_settings = session_settings.get('capture_settings', None)
    if previous_settings and previous_settings['name'] == cap.name:
        cap.settings = previous_settings
    else:
        cap.settings = default_settings

    # Test capture
    try:
        frame = cap.get_frame()
    except CameraCaptureError:
        logger.error("Could not retrieve image from capture")
        cap.close()
        return

    #signal world that we are ready to go
    pipe_to_world.send('eye%s process ready' % eye_id)

    # any object we attach to the g_pool object *from now on* will only be visible to this process!
    # vars should be declared here to make them visible to the code reader.
    g_pool.iconified = False
    g_pool.capture = cap
    g_pool.flip = session_settings.get('flip', False)
    g_pool.display_mode = session_settings.get('display_mode', 'camera_image')
    g_pool.display_mode_info_text = {
        'camera_image':
        "Raw eye camera image. This uses the least amount of CPU power",
        'roi':
        "Click and drag on the blue circles to adjust the region of interest. The region should be a small as possible but big enough to capture to pupil in its movements",
        'algorithm':
        "Algorithm display mode overlays a visualization of the pupil detection parameters on top of the eye video. Adjust parameters with in the Pupil Detection menu below."
    }
    # g_pool.draw_pupil = session_settings.get('draw_pupil',True)

    u_r = UIRoi(frame.img.shape)
    u_r.set(session_settings.get('roi', u_r.get()))

    writer = None

    pupil_detector = Canny_Detector(g_pool)

    # UI callback functions
    def set_scale(new_scale):
        g_pool.gui.scale = new_scale
        g_pool.gui.collect_menus()

    def set_display_mode_info(val):
        g_pool.display_mode = val
        g_pool.display_mode_info.text = g_pool.display_mode_info_text[val]

    # Initialize glfw
    glfwInit()
    if g_pool.binocular:
        title = "Binocular eye %s" % eye_id
    else:
        title = 'Eye'
    width, height = session_settings.get('window_size',
                                         (frame.width, frame.height))
    main_window = glfwCreateWindow(width, height, title, None, None)
    window_pos = session_settings.get('window_position',
                                      window_position_default)
    glfwSetWindowPos(main_window, window_pos[0], window_pos[1])
    glfwMakeContextCurrent(main_window)
    cygl_init()

    # gl_state settings
    basic_gl_setup()
    g_pool.image_tex = Named_Texture()
    g_pool.image_tex.update_from_frame(frame)
    glfwSwapInterval(0)

    #setup GUI
    g_pool.gui = ui.UI()
    g_pool.gui.scale = session_settings.get('gui_scale', 1)
    g_pool.sidebar = ui.Scrolling_Menu("Settings",
                                       pos=(-300, 0),
                                       size=(0, 0),
                                       header_pos='left')
    general_settings = ui.Growing_Menu('General')
    general_settings.append(
        ui.Slider('scale',
                  g_pool.gui,
                  setter=set_scale,
                  step=.05,
                  min=1.,
                  max=2.5,
                  label='Interface Size'))
    general_settings.append(
        ui.Button(
            'Reset window size',
            lambda: glfwSetWindowSize(main_window, frame.width, frame.height)))
    general_settings.append(
        ui.Selector('display_mode',
                    g_pool,
                    setter=set_display_mode_info,
                    selection=['camera_image', 'roi', 'algorithm'],
                    labels=['Camera Image', 'ROI', 'Algorithm'],
                    label="Mode"))
    general_settings.append(
        ui.Switch('flip', g_pool, label='Flip image display'))
    g_pool.display_mode_info = ui.Info_Text(
        g_pool.display_mode_info_text[g_pool.display_mode])
    general_settings.append(g_pool.display_mode_info)
    g_pool.sidebar.append(general_settings)
    g_pool.gui.append(g_pool.sidebar)
    # let the camera add its GUI
    g_pool.capture.init_gui(g_pool.sidebar)
    # let detector add its GUI
    pupil_detector.init_gui(g_pool.sidebar)

    # Register callbacks main_window
    glfwSetFramebufferSizeCallback(main_window, on_resize)
    glfwSetWindowCloseCallback(main_window, on_close)
    glfwSetWindowIconifyCallback(main_window, on_iconify)
    glfwSetKeyCallback(main_window, on_key)
    glfwSetCharCallback(main_window, on_char)
    glfwSetMouseButtonCallback(main_window, on_button)
    glfwSetCursorPosCallback(main_window, on_pos)
    glfwSetScrollCallback(main_window, on_scroll)

    #set the last saved window size
    on_resize(main_window, *glfwGetWindowSize(main_window))

    # load last gui configuration
    g_pool.gui.configuration = session_settings.get('ui_config', {})

    #set up performance graphs
    pid = os.getpid()
    ps = psutil.Process(pid)
    ts = frame.timestamp

    cpu_graph = graph.Bar_Graph()
    cpu_graph.pos = (20, 130)
    cpu_graph.update_fn = ps.cpu_percent
    cpu_graph.update_rate = 5
    cpu_graph.label = 'CPU %0.1f'

    fps_graph = graph.Bar_Graph()
    fps_graph.pos = (140, 130)
    fps_graph.update_rate = 5
    fps_graph.label = "%0.0f FPS"

    #create a timer to control window update frequency
    window_update_timer = timer(1 / 60.)

    def window_should_update():
        return next(window_update_timer)

    # Event loop
    while not g_pool.quit.value:
        # Get an image from the grabber
        try:
            frame = cap.get_frame()
        except CameraCaptureError:
            logger.error("Capture from Camera Failed. Stopping.")
            break
        except EndofVideoFileError:
            logger.warning("Video File is done. Stopping")
            break

        #update performace graphs
        t = frame.timestamp
        dt, ts = t - ts, t
        try:
            fps_graph.add(1. / dt)
        except ZeroDivisionError:
            pass
        cpu_graph.update()

        ###  RECORDING of Eye Video (on demand) ###
        # Setup variables and lists for recording
        if pipe_to_world.poll():
            command, raw_mode = pipe_to_world.recv()
            if command is not None:
                record_path = command
                logger.info("Will save eye video to: %s" % record_path)
                timestamps_path = os.path.join(record_path,
                                               "eye%s_timestamps.npy" % eye_id)
                if raw_mode and frame.jpeg_buffer:
                    video_path = os.path.join(record_path,
                                              "eye%s.mp4" % eye_id)
                    writer = JPEG_Writer(video_path, cap.frame_rate)
                else:
                    video_path = os.path.join(record_path,
                                              "eye%s.mp4" % eye_id)
                    writer = AV_Writer(video_path, cap.frame_rate)
                timestamps = []
            else:
                logger.info("Done recording.")
                writer.release()
                writer = None
                np.save(timestamps_path, np.asarray(timestamps))
                del timestamps

        if writer:
            writer.write_video_frame(frame)
            timestamps.append(frame.timestamp)

        # pupil ellipse detection
        result = pupil_detector.detect(
            frame, user_roi=u_r, visualize=g_pool.display_mode == 'algorithm')
        result['id'] = eye_id
        # stream the result
        g_pool.pupil_queue.put(result)

        # GL drawing
        if window_should_update():
            if not g_pool.iconified:
                glfwMakeContextCurrent(main_window)
                clear_gl_screen()

                # switch to work in normalized coordinate space
                if g_pool.display_mode == 'algorithm':
                    g_pool.image_tex.update_from_ndarray(frame.img)
                elif g_pool.display_mode in ('camera_image', 'roi'):
                    g_pool.image_tex.update_from_ndarray(frame.gray)
                else:
                    pass

                make_coord_system_norm_based(g_pool.flip)
                g_pool.image_tex.draw()
                # switch to work in pixel space
                make_coord_system_pixel_based((frame.height, frame.width, 3),
                                              g_pool.flip)

                if result['confidence'] > 0:
                    if result.has_key('axes'):
                        pts = cv2.ellipse2Poly((int(
                            result['center'][0]), int(result['center'][1])),
                                               (int(result['axes'][0] / 2),
                                                int(result['axes'][1] / 2)),
                                               int(result['angle']), 0, 360,
                                               15)
                        cygl_draw_polyline(pts, 1, cygl_rgba(1., 0, 0, .5))
                    cygl_draw_points([result['center']],
                                     size=20,
                                     color=cygl_rgba(1., 0., 0., .5),
                                     sharpness=1.)

                # render graphs
                graph.push_view()
                fps_graph.draw()
                cpu_graph.draw()
                graph.pop_view()

                # render GUI
                g_pool.gui.update()

                #render the ROI
                if g_pool.display_mode == 'roi':
                    u_r.draw(g_pool.gui.scale)

                #update screen
                glfwSwapBuffers(main_window)
            glfwPollEvents()

    # END while running

    # in case eye recording was still runnnig: Save&close
    if writer:
        logger.info("Done recording eye.")
        writer = None
        np.save(timestamps_path, np.asarray(timestamps))

    glfwRestoreWindow(main_window)  #need to do this for windows os
    # save session persistent settings
    session_settings['gui_scale'] = g_pool.gui.scale
    session_settings['roi'] = u_r.get()
    session_settings['flip'] = g_pool.flip
    session_settings['display_mode'] = g_pool.display_mode
    session_settings['ui_config'] = g_pool.gui.configuration
    session_settings['capture_settings'] = g_pool.capture.settings
    session_settings['window_size'] = glfwGetWindowSize(main_window)
    session_settings['window_position'] = glfwGetWindowPos(main_window)
    session_settings['version'] = g_pool.version
    session_settings.close()

    pupil_detector.cleanup()
    g_pool.gui.terminate()
    glfwDestroyWindow(main_window)
    glfwTerminate()
    cap.close()

    #flushing queue in case world process did not exit gracefully
    while not g_pool.pupil_queue.empty():
        g_pool.pupil_queue.get()
    g_pool.pupil_queue.close()

    logger.debug("Process done")
Example #5
0
def eye(pupil_queue, timebase, pipe_to_world, is_alive_flag, user_dir, version, eye_id, cap_src):
    """
    Creates a window, gl context.
    Grabs images from a capture.
    Streams Pupil coordinates into g_pool.pupil_queue
    """
    is_alive = Is_Alive_Manager(is_alive_flag)
    with is_alive:
        import logging
        # Set up root logger for this process before doing imports of logged modules.
        logger = logging.getLogger()
        logger.setLevel(logging.INFO)
        # remove inherited handlers
        logger.handlers = []
        # create file handler which logs even debug messages
        fh = logging.FileHandler(os.path.join(user_dir,'eye%s.log'%eye_id),mode='w')
        # fh.setLevel(logging.DEBUG)
        # create console handler with a higher log level
        ch = logging.StreamHandler()
        ch.setLevel(logger.level+10)
        # create formatter and add it to the handlers
        formatter = logging.Formatter('Eye'+str(eye_id)+' Process: %(asctime)s - %(name)s - %(levelname)s - %(message)s')
        fh.setFormatter(formatter)
        formatter = logging.Formatter('EYE'+str(eye_id)+' Process [%(levelname)s] %(name)s : %(message)s')
        ch.setFormatter(formatter)
        # add the handlers to the logger
        logger.addHandler(fh)
        logger.addHandler(ch)
        #silence noisy modules
        logging.getLogger("OpenGL").setLevel(logging.ERROR)
        logging.getLogger("libav").setLevel(logging.ERROR)
        # create logger for the context of this function
        logger = logging.getLogger(__name__)


        # We deferr the imports becasue of multiprocessing.
        # Otherwise the world process each process also loads the other imports.

        #general imports
        import numpy as np
        import cv2

        #display
        import glfw
        from pyglui import ui,graph,cygl
        from pyglui.cygl.utils import draw_points,RGBA,draw_polyline,Named_Texture
        from OpenGL.GL import GL_LINE_LOOP
        from gl_utils import basic_gl_setup,adjust_gl_view, clear_gl_screen ,make_coord_system_pixel_based,make_coord_system_norm_based
        from ui_roi import UIRoi
        #monitoring
        import psutil


        # helpers/utils
        from file_methods import Persistent_Dict
        from version_utils import VersionFormat
        from methods import normalize, denormalize, Roi, timer
        from video_capture import autoCreateCapture, FileCaptureError, EndofVideoFileError, CameraCaptureError
        from av_writer import JPEG_Writer,AV_Writer

        # Pupil detectors
        from pupil_detectors import Canny_Detector



        #UI Platform tweaks
        if platform.system() == 'Linux':
            scroll_factor = 10.0
            window_position_default = (600,300*eye_id)
        elif platform.system() == 'Windows':
            scroll_factor = 1.0
            window_position_default = (600,31+300*eye_id)
        else:
            scroll_factor = 1.0
            window_position_default = (600,300*eye_id)

        #g_pool holds variables for this process
        g_pool = Global_Container()

        # make some constants avaiable
        g_pool.user_dir = user_dir
        g_pool.version = version
        g_pool.app = 'capture'
        g_pool.pupil_queue = pupil_queue
        g_pool.timebase = timebase


        # Callback functions
        def on_resize(window,w, h):
            if not g_pool.iconified:
                active_window = glfw.glfwGetCurrentContext()
                glfw.glfwMakeContextCurrent(window)
                g_pool.gui.update_window(w,h)
                graph.adjust_size(w,h)
                adjust_gl_view(w,h)
                glfw.glfwMakeContextCurrent(active_window)

        def on_key(window, key, scancode, action, mods):
            g_pool.gui.update_key(key,scancode,action,mods)

        def on_char(window,char):
            g_pool.gui.update_char(char)

        def on_iconify(window,iconified):
            g_pool.iconified = iconified

        def on_button(window,button, action, mods):
            if g_pool.display_mode == 'roi':
                if action == glfw.GLFW_RELEASE and u_r.active_edit_pt:
                    u_r.active_edit_pt = False
                    return # if the roi interacts we dont what the gui to interact as well
                elif action == glfw.GLFW_PRESS:
                    pos = glfw.glfwGetCursorPos(window)
                    pos = normalize(pos,glfw.glfwGetWindowSize(main_window))
                    if g_pool.flip:
                        pos = 1-pos[0],1-pos[1]
                    pos = denormalize(pos,(frame.width,frame.height)) # Position in img pixels
                    if u_r.mouse_over_edit_pt(pos,u_r.handle_size+40,u_r.handle_size+40):
                        return # if the roi interacts we dont what the gui to interact as well

            g_pool.gui.update_button(button,action,mods)



        def on_pos(window,x, y):
            hdpi_factor = float(glfw.glfwGetFramebufferSize(window)[0]/glfw.glfwGetWindowSize(window)[0])
            g_pool.gui.update_mouse(x*hdpi_factor,y*hdpi_factor)

            if u_r.active_edit_pt:
                pos = normalize((x,y),glfw.glfwGetWindowSize(main_window))
                if g_pool.flip:
                    pos = 1-pos[0],1-pos[1]
                pos = denormalize(pos,(frame.width,frame.height) )
                u_r.move_vertex(u_r.active_pt_idx,pos)

        def on_scroll(window,x,y):
            g_pool.gui.update_scroll(x,y*scroll_factor)


        # load session persistent settings
        session_settings = Persistent_Dict(os.path.join(g_pool.user_dir,'user_settings_eye%s'%eye_id))
        if session_settings.get("version",VersionFormat('0.0')) < g_pool.version:
            logger.info("Session setting are from older version of this app. I will not use those.")
            session_settings.clear()
        # Initialize capture
        cap = autoCreateCapture(cap_src, timebase=g_pool.timebase)
        default_settings = {'frame_size':(640,480),'frame_rate':30}
        previous_settings = session_settings.get('capture_settings',None)
        if previous_settings and previous_settings['name'] == cap.name:
            cap.settings = previous_settings
        else:
            cap.settings = default_settings

        # Test capture
        try:
            frame = cap.get_frame()
        except CameraCaptureError:
            logger.error("Could not retrieve image from capture")
            cap.close()
            return

        #signal world that we are ready to go
        # pipe_to_world.send('eye%s process ready'%eye_id)

        # any object we attach to the g_pool object *from now on* will only be visible to this process!
        # vars should be declared here to make them visible to the code reader.
        g_pool.iconified = False
        g_pool.capture = cap
        g_pool.flip = session_settings.get('flip',False)
        g_pool.display_mode = session_settings.get('display_mode','camera_image')
        g_pool.display_mode_info_text = {'camera_image': "Raw eye camera image. This uses the least amount of CPU power",
                                    'roi': "Click and drag on the blue circles to adjust the region of interest. The region should be a small as possible but big enough to capture to pupil in its movements",
                                    'algorithm': "Algorithm display mode overlays a visualization of the pupil detection parameters on top of the eye video. Adjust parameters with in the Pupil Detection menu below."}
        # g_pool.draw_pupil = session_settings.get('draw_pupil',True)

        u_r = UIRoi(frame.img.shape)
        u_r.set(session_settings.get('roi',u_r.get()))

        writer = None

        pupil_detector = Canny_Detector(g_pool)


        # UI callback functions
        def set_scale(new_scale):
            g_pool.gui.scale = new_scale
            g_pool.gui.collect_menus()


        def set_display_mode_info(val):
            g_pool.display_mode = val
            g_pool.display_mode_info.text = g_pool.display_mode_info_text[val]


        # Initialize glfw
        glfw.glfwInit()
        title = "eye %s"%eye_id
        width,height = session_settings.get('window_size',(frame.width, frame.height))
        main_window = glfw.glfwCreateWindow(width,height, title, None, None)
        window_pos = session_settings.get('window_position',window_position_default)
        glfw.glfwSetWindowPos(main_window,window_pos[0],window_pos[1])
        glfw.glfwMakeContextCurrent(main_window)
        cygl.utils.init()

        # gl_state settings
        basic_gl_setup()
        g_pool.image_tex = Named_Texture()
        g_pool.image_tex.update_from_frame(frame)
        glfw.glfwSwapInterval(0)


        #setup GUI
        g_pool.gui = ui.UI()
        g_pool.gui.scale = session_settings.get('gui_scale',1)
        g_pool.sidebar = ui.Scrolling_Menu("Settings",pos=(-300,0),size=(0,0),header_pos='left')
        general_settings = ui.Growing_Menu('General')
        general_settings.append(ui.Slider('scale',g_pool.gui, setter=set_scale,step = .05,min=1.,max=2.5,label='Interface Size'))
        general_settings.append(ui.Button('Reset window size',lambda: glfw.glfwSetWindowSize(main_window,frame.width,frame.height)) )
        general_settings.append(ui.Selector('display_mode',g_pool,setter=set_display_mode_info,selection=['camera_image','roi','algorithm'], labels=['Camera Image', 'ROI', 'Algorithm'], label="Mode") )
        general_settings.append(ui.Switch('flip',g_pool,label='Flip image display'))
        g_pool.display_mode_info = ui.Info_Text(g_pool.display_mode_info_text[g_pool.display_mode])
        general_settings.append(g_pool.display_mode_info)
        g_pool.sidebar.append(general_settings)
        g_pool.gui.append(g_pool.sidebar)
        # let the camera add its GUI
        g_pool.capture.init_gui(g_pool.sidebar)
        # let detector add its GUI
        pupil_detector.init_gui(g_pool.sidebar)

        # Register callbacks main_window
        glfw.glfwSetFramebufferSizeCallback(main_window,on_resize)
        glfw.glfwSetWindowIconifyCallback(main_window,on_iconify)
        glfw.glfwSetKeyCallback(main_window,on_key)
        glfw.glfwSetCharCallback(main_window,on_char)
        glfw.glfwSetMouseButtonCallback(main_window,on_button)
        glfw.glfwSetCursorPosCallback(main_window,on_pos)
        glfw.glfwSetScrollCallback(main_window,on_scroll)

        #set the last saved window size
        on_resize(main_window, *glfw.glfwGetWindowSize(main_window))


        # load last gui configuration
        g_pool.gui.configuration = session_settings.get('ui_config',{})


        #set up performance graphs
        pid = os.getpid()
        ps = psutil.Process(pid)
        ts = frame.timestamp

        cpu_graph = graph.Bar_Graph()
        cpu_graph.pos = (20,130)
        cpu_graph.update_fn = ps.cpu_percent
        cpu_graph.update_rate = 5
        cpu_graph.label = 'CPU %0.1f'

        fps_graph = graph.Bar_Graph()
        fps_graph.pos = (140,130)
        fps_graph.update_rate = 5
        fps_graph.label = "%0.0f FPS"


        #create a timer to control window update frequency
        window_update_timer = timer(1/60.)
        def window_should_update():
            return next(window_update_timer)


        # Event loop
        while not glfw.glfwWindowShouldClose(main_window):

            if pipe_to_world.poll():
                command = pipe_to_world.recv()
                if command == 'Exit':
                    break
                elif command == "Ping":
                    pipe_to_world.send("Pong")
                    command = None
            else:
                command = None


            # Get an image from the grabber
            try:
                frame = cap.get_frame()
            except CameraCaptureError:
                logger.error("Capture from Camera Failed. Stopping.")
                break
            except EndofVideoFileError:
                logger.warning("Video File is done. Stopping")
                break


            #update performace graphs
            t = frame.timestamp
            dt,ts = t-ts,t
            try:
                fps_graph.add(1./dt)
            except ZeroDivisionError:
                pass
            cpu_graph.update()


            ###  RECORDING of Eye Video (on demand) ###
            # Setup variables and lists for recording

            if command:
                if 'Rec_Start:' in command:
                    record_path,raw_mode = command
                    logger.info("Will save eye video to: %s"%record_path)
                    timestamps_path = os.path.join(record_path, "eye%s_timestamps.npy"%eye_id)
                    if raw_mode and frame.jpeg_buffer:
                        video_path = os.path.join(record_path, "eye%s.mp4"%eye_id)
                        writer = JPEG_Writer(video_path,cap.frame_rate)
                    else:
                        video_path = os.path.join(record_path, "eye%s.mp4"%eye_id)
                        writer = AV_Writer(video_path,cap.frame_rate)
                    timestamps = []
                elif 'Rec_Stop:' in command:
                    logger.info("Done recording.")
                    writer.release()
                    writer = None
                    np.save(timestamps_path,np.asarray(timestamps))
                    del timestamps

            if writer:
                writer.write_video_frame(frame)
                timestamps.append(frame.timestamp)


            # pupil ellipse detection
            result = pupil_detector.detect(frame,user_roi=u_r,visualize=g_pool.display_mode == 'algorithm')
            result['id'] = eye_id
            # stream the result
            g_pool.pupil_queue.put(result)

            # GL drawing
            if window_should_update():
                if not g_pool.iconified:
                    glfw.glfwMakeContextCurrent(main_window)
                    clear_gl_screen()

                    # switch to work in normalized coordinate space
                    if g_pool.display_mode == 'algorithm':
                        g_pool.image_tex.update_from_ndarray(frame.img)
                    elif g_pool.display_mode in ('camera_image','roi'):
                        g_pool.image_tex.update_from_ndarray(frame.gray)
                    else:
                        pass

                    make_coord_system_norm_based(g_pool.flip)
                    g_pool.image_tex.draw()
                    # switch to work in pixel space
                    make_coord_system_pixel_based((frame.height,frame.width,3),g_pool.flip)

                    if result['confidence'] >0:
                        if result.has_key('axes'):
                            pts = cv2.ellipse2Poly( (int(result['center'][0]),int(result['center'][1])),
                                                    (int(result['axes'][0]/2),int(result['axes'][1]/2)),
                                                    int(result['angle']),0,360,15)
                            draw_polyline(pts,1,RGBA(1.,0,0,.5))
                        draw_points([result['center']],size=20,color=RGBA(1.,0.,0.,.5),sharpness=1.)

                    # render graphs
                    graph.push_view()
                    fps_graph.draw()
                    cpu_graph.draw()
                    graph.pop_view()

                    # render GUI
                    g_pool.gui.update()

                    #render the ROI
                    if g_pool.display_mode == 'roi':
                        u_r.draw(g_pool.gui.scale)

                    #update screen
                    glfw.glfwSwapBuffers(main_window)
                glfw.glfwPollEvents()

        # END while running

        # in case eye recording was still runnnig: Save&close
        if writer:
            logger.info("Done recording eye.")
            writer = None
            np.save(timestamps_path,np.asarray(timestamps))

        glfw.glfwRestoreWindow(main_window) #need to do this for windows os
        # save session persistent settings
        session_settings['gui_scale'] = g_pool.gui.scale
        session_settings['roi'] = u_r.get()
        session_settings['flip'] = g_pool.flip
        session_settings['display_mode'] = g_pool.display_mode
        session_settings['ui_config'] = g_pool.gui.configuration
        session_settings['capture_settings'] = g_pool.capture.settings
        session_settings['window_size'] = glfw.glfwGetWindowSize(main_window)
        session_settings['window_position'] = glfw.glfwGetWindowPos(main_window)
        session_settings['version'] = g_pool.version
        session_settings.close()

        pupil_detector.cleanup()
        g_pool.gui.terminate()
        glfw.glfwDestroyWindow(main_window)
        glfw.glfwTerminate()
        cap.close()

        logger.debug("Process done")