if (DataType == 'Structural') and (SubjectSessionsType.count('strc') > 1):
for i in xrange(0, len(SubjectSessions)):
if (SubjectSessions[i].find('xtr') != -1):
relevantSession = SubjectSessions[i]
PrintList = list()
#===============================================================================
# Do ALL for a given set of directories...
#===============================================================================
for i in xrange(0, len(FileURIs)):
for j in xrange(0, len(Keywords)):
if (FileURIs[i].find(Keywords[j] + '/' + FileNames[i].replace('"', ''))
!= -1) and (FileSessions[i] == relevantSession):
getHCP.DestinationDir = DestDir + Keywords[j]
getHCP.writeFileFromURL([FileURIs[i]])
PrintList.append(FileURIs[i])
#currDestDir = os.path.normpath(destDir +os.sep+ SourceDir)
#getHCP.fWriteFileFromURL(PrintList)
PrintList = list()
#===============================================================================
# Do T1w file specific matching...
#===============================================================================
SourceDir = 'T1w/'
for i in xrange(0, len(FileURIs)):
for j in xrange(0, len(T1wList)):
if (FileURIs[i].find(SourceDir + T1wList[j]) !=
-1) and (FileSessions[i] == relevantSession):
getHCP.DestinationDir = DestDir + SourceDir
#===============================================================================
# make a list of quality and series for printing...
ScanTypeIdx = [k for k, element in enumerate(ScanType) if (element == 'T1w') or (element == 'T2w')]
for k in xrange(0, len(ScanTypeIdx)):
writeScanQuality.append(Quality[ScanTypeIdx[k]])
writeScanSeries.append(Series[ScanTypeIdx[k]])
outputFileAppend = 'Quality'
outputDirPrepend = 'Quality'
outputFileBase = getHCP.Session
outputDirFile = '%s\\%s\\%s%s' % (outputDir, outputDirPrepend, outputFileBase, outputFileExt)
fPrintTabList( outputDirFile, ['Quality', 'Series'], writeScanQuality, writeScanSeries)
#===============================================================================
AssessorIDs = getHCP.getAssessorIDs( )
AssessorFileURIList = getHCP.getAssessorOutputFile( AssessorIDs )
for k in xrange(0, len(AssessorFileURIList)):
currURI = AssessorFileURIList[k]
if ( (currURI.find('Fourier') != -1) and (currURI.find('txt') != -1) and not (currURI.find('BOLD') != -1) ):
writeAssessorFileURIList.append(currURI)
getHCP.writeFileFromURL(writeAssessorFileURIList)
#===============================================================================
print("Duration: %s" % (time.time() - sTime))
ScanTypeIdx = [
k for k, element in enumerate(ScanType)
if (element == 'T1w') or (element == 'T2w')
]
for k in xrange(0, len(ScanTypeIdx)):
writeScanQuality.append(Quality[ScanTypeIdx[k]])
writeScanSeries.append(Series[ScanTypeIdx[k]])
outputFileAppend = 'Quality'
outputDirPrepend = 'Quality'
outputFileBase = getHCP.Session
outputDirFile = '%s\\%s\\%s%s' % (outputDir, outputDirPrepend,
outputFileBase, outputFileExt)
fPrintTabList(outputDirFile, ['Quality', 'Series'], writeScanQuality,
writeScanSeries)
#===============================================================================
AssessorIDs = getHCP.getAssessorIDs()
AssessorFileURIList = getHCP.getAssessorOutputFile(AssessorIDs)
for k in xrange(0, len(AssessorFileURIList)):
currURI = AssessorFileURIList[k]
if ((currURI.find('Fourier') != -1) and (currURI.find('txt') != -1)
and not (currURI.find('BOLD') != -1)):
writeAssessorFileURIList.append(currURI)
getHCP.writeFileFromURL(writeAssessorFileURIList)
#===============================================================================
print("Duration: %s" % (time.time() - sTime))
