Python DownStreamHYPHY.transfer_for_r Examples

Example #1

def main1():
    paras = ["likelihood", "aic", "w"]
    path_working = "/home/zerodel/Workspace/former10"
    mid = "10"

    gene_all = dsh.transfer_for_r("gtr", mid, paras, path_working)
    gene_all_tmp = dsh.transfer_for_r("gu", mid, paras, path_working)

    if not gene_all == gene_all_tmp:
        print "not same length"

    gene_all_tmp = dsh.transfer_for_r("nest", mid, paras, path_working)

    if not gene_all == gene_all_tmp:
        print "not same length"

Example #2

def main3():
    path_result = "/home/zerodel/Workspace/merge0914/2sp"

    dir_now = os.path.abspath(os.curdir)

    os.chdir(path_result)
    para = "psi"
    model = "nest"
    mid = "2"
    system_order = "grep -i " + para + " *" + model + ".result >" + "../" + model + mid + para + ".txt"
    os.system(system_order)
    path_working = "/home/zerodel/Workspace/merge0914"

    gene_all = dsh.transfer_for_r("nest", mid, ["psi"], path_working)

Example #3

File: flyResult1004.py Project: zerodel/python-rna-structure

def prepare4r():
    dsh.transfer_for_r("gtr", "", gtr_list_para, "/home/zerodel/Workspace/Fly/ExtractedParameters")
    dsh.transfer_for_r("nest", "", nest_list_para, "/home/zerodel/Workspace/Fly/ExtractedParameters")

Example #4

File: flyResult1004.py Project: zerodel/python-rna-structure

def prepare4r():
    dsh.transfer_for_r("gtr", "", gtr_list_para,
                       "/home/zerodel/Workspace/Fly/ExtractedParameters")
    dsh.transfer_for_r("nest", "", nest_list_para,
                       "/home/zerodel/Workspace/Fly/ExtractedParameters")