Python mzImages Examples

Programming Language: Python

Namespace/Package Name: pyIMS.image_measures.image_autogen

Method/Function: mzImages

Examples at hotexamples.com: 2

Python mzImages - 2 examples found. These are the top rated real world Python examples of pyIMS.image_measures.image_autogen.mzImages extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: mzImagesBatch.py Project: LucaRappez/pyIMS

import sys
sys.path.append('C:\\Users\\Luca Rappez\\Desktop\\python_codebase\\')
from pyIMS.image_measures.image_autogen import mzImages

filename_in =  '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida/20150825_ADP_LR_CoCulture250_DHBsub_120x60_60um.hdf5'
save_dir= '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida/20150825_ADP_LR_CoCulture250_DHBsub_120x60_60um_figures'
mzImages(filename_in,save_dir)

filename_in =  '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida+K12/20150821_ADP_LR_colony250K12_DHBsub_260x280_50um.hdf5'
save_dir= '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida+K12/20150821_ADP_LR_colony250K12_DHBsub_260x280_50um_figures'
mzImages(filename_in,save_dir)

filename_in =  '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida+YPJD/20150825_ADP_LR_CoCulture_250_YPJD_DHBsub_280x140_60um.hdf5'
save_dir= '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/Candida+YPJD/20150825_ADP_LR_CoCulture_250_YPJD_DHBsub_280x140_60um_figures'
mzImages(filename_in,save_dir)

filename_in =  '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/K12/20150826_ADP_LR_CoCulture_k12_DHBsub_182x182_55um.hdf5'
save_dir= '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/K12/20150826_ADP_LR_CoCulture_k12_DHBsub_182x182_55um_figures'
mzImages(filename_in,save_dir)

filename_in =  '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/YPJD/20150826_ADP_LR_CoCulture_YPJD_DHBsub_103x135_60um.hdf5'
save_dir= '//psi.embl.de/alexandr/shared/Luca/20150825_CoCulture_Candida_Ecoli/YPJD/20150826_ADP_LR_CoCulture_YPJD_DHBsub_103x135_60um_figures'
mzImages(filename_in,save_dir)

Example #2

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File: batch.py Project: LucaRappez/pyIMS

__author__ = 'Luca Rappez'
import sys
sys.path.append('C:\\Users\\Luca Rappez\\Desktop\\python_codebase\\')
from pyIMS.image_measures.image_autogen import mzImages


filename_in1 = '//psi.embl.de/alexandr/shared/imagingMS/EMBL/PSM_alba/20150806_ANB_PSM_5_110x100um_pos_PSM5/20150806_ANB_PSM_5_110x100um_pos.hdf5'
filename_in2 = '//psi.embl.de/alexandr/shared/imagingMS/EMBL/PSM_alba/20150807_ANB_PSM_7_82x82um_pos_PSM7/20150807_ANB_PSM_7_82x82um_pos.hdf5'
save_dir1 = '//psi.embl.de/alexandr/shared/imagingMS/EMBL/PSM_alba/20150806_ANB_PSM_5_110x100um_pos_PSM5/autogen'
save_dir2 = '//psi.embl.de/alexandr/shared/imagingMS/EMBL/PSM_alba/20150807_ANB_PSM_7_82x82um_pos_PSM7/autogen'

mzImages(filename_in2,save_dir2)
#mzImages(filename_in1,save_dir1)kfhre