def createSplitStacks(self): self.splitStacks = {} self.splitStacks['left'] = "particles.left.mrc" self.splitStacks['right'] = "particles.right.mrc" if not os.path.isfile(self.splitStacks['left']): pass elif not os.path.isfile(self.splitStacks['right']): pass elif apFile.fileSize(self.splitStacks['left']) < 100: pass elif apFile.fileSize(self.splitStacks['right']) < 100: pass else: apDisplay.printMsg("split stacks already exist, skipping this step") return apDisplay.printColor("Step 1A: Splitting input stack %s into two parts" %(self.params['inputstack']), "purple") oddfile, evenfile = apImagicFile.splitStackEvenOdd(self.params['inputstack'], rundir=self.params['rundir'], msg=True) apDisplay.printColor("Step 1B: Converting odd particles from %s into Left MRC stack %s" %(oddfile, self.splitStacks['left']), "purple") imagic2mrc.imagic_to_mrc(oddfile, self.splitStacks['left']) apFile.removeStack(oddfile) apDisplay.printColor("Step 1C: Converting even particles from %s into Right MRC stack %s" %(evenfile, self.splitStacks['right']), "purple") imagic2mrc.imagic_to_mrc(evenfile, self.splitStacks['right']) apFile.removeStack(evenfile) return
def createSplitStacks(self): self.splitStacks = {} self.splitStacks['left'] = "particles.left.mrc" self.splitStacks['right'] = "particles.right.mrc" if not os.path.isfile(self.splitStacks['left']): pass elif not os.path.isfile(self.splitStacks['right']): pass elif apFile.fileSize(self.splitStacks['left']) < 100: pass elif apFile.fileSize(self.splitStacks['right']) < 100: pass else: apDisplay.printMsg( "split stacks already exist, skipping this step") return apDisplay.printColor( "Step 1A: Splitting input stack %s into two parts" % (self.params['inputstack']), "purple") oddfile, evenfile = apImagicFile.splitStackEvenOdd( self.params['inputstack'], rundir=self.params['rundir'], msg=True) apDisplay.printColor( "Step 1B: Converting odd particles from %s into Left MRC stack %s" % (oddfile, self.splitStacks['left']), "purple") imagic2mrc.imagic_to_mrc(oddfile, self.splitStacks['left']) apFile.removeStack(oddfile) apDisplay.printColor( "Step 1C: Converting even particles from %s into Right MRC stack %s" % (evenfile, self.splitStacks['right']), "purple") imagic2mrc.imagic_to_mrc(evenfile, self.splitStacks['right']) apFile.removeStack(evenfile) return
def convertImagicStackToMrcStack(infile,outfile): # 2D ImagicFile data block generated by EMAN is y-flipped from the original mrc. # Therefore, we need flip it back. imagic2mrc.imagic_to_mrc(infile,outfile,yflip=True)
def convertImagicStackToMrcStack(infile, outfile): # 2D ImagicFile data block generated by EMAN is y-flipped from the original mrc. # Therefore, we need flip it back. imagic2mrc.imagic_to_mrc(infile, outfile, yflip=True)