def mk_bowdb_pdbs(name, pdb_files):
flags.assert_flags('frag-lib')
bowdb = ejoin(name)
cached_cmd([bowdb],
'bowmk', '--overwrite', '--cpu', str(flags.config.cpu),
bowdb, flags.config.frag_lib, *pdb_files)
def mk_bowdb(name, protein_files):
flags.assert_flags('frag-lib', 'seq-hhm-db', 'pdb-hhm-db',
'hhfrag-inc', 'hhfrag-min', 'hhfrag-max', 'blits')
bowdb = ejoin(name)
args = [
'bowmk',
'--overwrite', # let the `cached_cmd` work out the deets
'--cpu', str(flags.config.cpu),
'--seq-db', flags.config.seq_hhm_db,
'--pdb-hhm-db', flags.config.pdb_hhm_db,
'--hhfrag-inc', str(flags.config.hhfrag_inc),
'--hhfrag-min', str(flags.config.hhfrag_min),
'--hhfrag-max', str(flags.config.hhfrag_max),
]
if not flags.config.blits:
args.append('--blits=false')
args += [bowdb, flags.config.frag_lib] + protein_files
cached_cmd([bowdb], *args)
