Python add_xstream Examples

Example #1

File: test_scripts.py Project: daler/pybedtools

def test_annotate_xstream():
    a = pybedtools.example_bedtool('m1.bed')
    b = pybedtools.example_bedtool('mm9.bed12')
    c = annotate.add_xstream(a, b, dist=1000, updown="up")
    assert a.field_count() == c.field_count() - 1
    assert len(a) == len(c)
    d = annotate.add_xstream(c, b, dist=1000, updown="down")
    assert a.field_count() == d.field_count() - 2

Example #2

def test_annotate_xstream():
    a = pybedtools.example_bedtool('m1.bed')
    b = pybedtools.example_bedtool('mm9.bed12')
    c = annotate.add_xstream(a, b, dist=1000, updown="up")
    assert a.field_count() == c.field_count() - 1
    assert len(a) == len(c)
    d = annotate.add_xstream(c, b, dist=1000, updown="down")
    assert a.field_count() == d.field_count() - 2