def make_coinc_info(workflow, singles, bank, coinc, out_dir,
n_loudest=None, trig_id=None, file_substring=None,
sort_order=None, sort_var=None, tags=None):
tags = [] if tags is None else tags
makedir(out_dir)
name = 'page_coincinfo'
files = FileList([])
node = PlotExecutable(workflow.cp, name, ifos=workflow.ifos,
out_dir=out_dir, tags=tags).create_node()
node.add_input_list_opt('--single-trigger-files', singles)
node.add_input_opt('--statmap-file', coinc)
node.add_input_opt('--bank-file', bank)
if sort_order:
node.add_opt('--sort-order', sort_order)
if sort_var:
node.add_opt('--sort-variable', sort_var)
if n_loudest is not None:
node.add_opt('--n-loudest', str(n_loudest))
if trig_id is not None:
node.add_opt('--trigger-id', str(trig_id))
if file_substring is not None:
node.add_opt('--statmap-file-subspace-name', file_substring)
node.new_output_file_opt(workflow.analysis_time, '.html', '--output-file')
workflow += node
files += node.output_files
return files
def make_coinc_info(workflow,
singles,
bank,
coinc,
num,
out_dir,
exclude=None,
require=None,
tags=None):
tags = [] if tags is None else tags
makedir(out_dir)
name = 'page_coincinfo'
secs = requirestr(workflow.cp.get_subsections(name), require)
secs = excludestr(secs, exclude)
files = FileList([])
node = PlotExecutable(workflow.cp,
name,
ifos=workflow.ifos,
out_dir=out_dir,
tags=tags).create_node()
node.add_input_list_opt('--single-trigger-files', singles)
node.add_input_opt('--statmap-file', coinc)
node.add_input_opt('--bank-file', bank)
node.add_opt('--n-loudest', str(num))
node.new_output_file_opt(workflow.analysis_time, '.html', '--output-file')
workflow += node
files += node.output_files
return files
def make_coinc_info(workflow,
singles,
bank,
coinc,
num,
out_dir,
exclude=None,
require=None,
tags=None):
tags = [] if tags is None else tags
makedir(out_dir)
name = 'page_coincinfo'
secs = requirestr(workflow.cp.get_subsections(name), require)
secs = excludestr(secs, exclude)
files = FileList([])
node = PlotExecutable(
workflow.cp, name, ifos=workflow.ifos, out_dir=out_dir,
tags=tags).create_node()
node.add_input_list_opt('--single-trigger-files', singles)
node.add_input_opt('--statmap-file', coinc)
node.add_input_opt('--bank-file', bank)
node.add_opt('--n-loudest', str(num))
node.new_output_file_opt(workflow.analysis_time, '.html', '--output-file')
workflow += node
files += node.output_files
return files
def make_coinc_info(workflow, singles, bank, coinc, num, out_dir, tags=None):
tags = [] if tags is None else tags
makedir(out_dir)
name = "page_coincinfo"
files = FileList([])
node = PlotExecutable(workflow.cp, name, ifos=workflow.ifos, out_dir=out_dir, tags=tags).create_node()
node.add_input_list_opt("--single-trigger-files", singles)
node.add_input_opt("--statmap-file", coinc)
node.add_input_opt("--bank-file", bank)
node.add_opt("--n-loudest", str(num))
node.new_output_file_opt(workflow.analysis_time, ".html", "--output-file")
workflow += node
files += node.output_files
return files
def make_coinc_info(workflow, singles, bank, coinc, out_dir,
n_loudest=None, trig_id=None, file_substring=None,
tags=None):
tags = [] if tags is None else tags
makedir(out_dir)
name = 'page_coincinfo'
files = FileList([])
node = PlotExecutable(workflow.cp, name, ifos=workflow.ifos,
out_dir=out_dir, tags=tags).create_node()
node.add_input_list_opt('--single-trigger-files', singles)
node.add_input_opt('--statmap-file', coinc)
node.add_input_opt('--bank-file', bank)
if n_loudest is not None:
node.add_opt('--n-loudest', str(n_loudest))
if trig_id is not None:
node.add_opt('--trigger-id', str(trig_id))
if file_substring is not None:
node.add_opt('--statmap-file-subspace-name', file_substring)
node.new_output_file_opt(workflow.analysis_time, '.html', '--output-file')
workflow += node
files += node.output_files
return files
def make_inference_plot(workflow,
input_file,
output_dir,
name,
analysis_seg=None,
tags=None,
input_file_opt='input-file',
output_file_extension='.png',
add_to_workflow=False):
"""Boiler-plate function for creating a standard plotting job.
Parameters
----------
workflow: pycbc.workflow.Workflow
The core workflow instance we are populating
input_file: (list of) pycbc.workflow.File
The file used for the input. May provide either a single file or a
list of files.
output_dir: str
The directory to store result plots.
name: str
The name in the [executables] section of the configuration file
to use.
analysis_segs: ligo.segments.Segment, optional
The segment this job encompasses. If None then use the total analysis
time from the workflow.
tags: list, optional
Tags to add to the inference executables.
input_file_opt : str, optional
The name of the input-file option used by the executable. Default
is ``input-file``.
output_file_extension : str, optional
What file type to create. Default is ``.png``.
add_to_workflow : bool, optional
If True, the node will be added to the workflow before being returned.
**This means that no options may be added to the node afterward.**
Default is ``False``.
Returns
-------
pycbc.workflow.plotting.PlotExecutable
The job node for creating the plot.
"""
# default values
if tags is None:
tags = []
if analysis_seg is None:
analysis_seg = workflow.analysis_time
# make the directory that will contain the output files
makedir(output_dir)
# Catch if a parameters option was specified:
# we need to do this because PlotExecutable will automatically add any
# option in the section to the node. However, we need to add the
# appropriate escapes to the parameters option so pegasus will render it
# properly (see _params_for_pegasus for details).
parameters = None
if workflow.cp.has_option(name, 'parameters'):
parameters = workflow.cp.get(name, 'parameters')
workflow.cp.remove_option(name, 'parameters')
# make a node for plotting the posterior as a corner plot
node = PlotExecutable(workflow.cp,
name,
ifos=workflow.ifos,
out_dir=output_dir,
tags=tags).create_node()
# add back the parameters option if it was specified
if parameters is not None:
node.add_opt("--parameters", _params_for_pegasus(parameters))
# and put the opt back in the config file in memory
workflow.cp.set(name, 'parameters', parameters)
# add input and output options
if isinstance(input_file, list):
# list of input files are given, use input_list_opt
node.add_input_list_opt("--{}".format(input_file_opt), input_file)
else:
# assume just a single file
node.add_input_opt("--{}".format(input_file_opt), input_file)
node.new_output_file_opt(analysis_seg, output_file_extension,
"--output-file")
# add node to workflow
if add_to_workflow:
workflow += node
return node