def parse_log(self):
"""read through self.text, instantiate LogEntry objects and return a
list of them"""
def _parse_entry(iterable):
tmp = LogEntry()
# parse values from exchange header
header = iterable[0].split()
tmp.exchange = int(header[2][:-1])
tmp.step = int(header[4][:-1])
tmp.repeat = int(header[6])
tmp.body = iterable[1:]
tmp._parse_body()
return tmp
tmp = []
for entry in paragraphs(self.text, "# exchange"):
tmp.append(_parse_entry(entry))
return tmp
def _parse_residue(self):
resi = []
pres = []
other = []
for block in paragraphs(self.deque, ('resi', 'pres', 'end')):
if block[0].startswith('resi'):
resi.append(block)
elif block[0].startswith('pres'):
pres.append(block)
else:
other.extend(block)
other.append('end')
if self.residue is None and resi:
self.residue = resi
elif self.residue is not None and resi:
self.residue.extend(resi)
if self.patch is None and pres:
self.patch = pres
elif self.patch is not None and pres:
self.patch.extend(pres)
self.deque = deque(other)
