def __init__(self, an, *args, **kw):
super(SpectrometerView, self).__init__(*args, **kw)
# source
sp = an.source_parameters
sd = [DValue(k, v) for k, v in sp.items()]
self.source_parameters = sd
# filament
sp = an.filament_parameters
sd = [DValue(k.capitalize(), v) for k, v in sp.items()]
t = sp.get('trap')
e = sp.get('emission')
et = 0
if t and e:
et = e / t
sd.append(DValue('E/T', et))
self.filament_parameters = sd
# deflections
defls = an.deflections
names = sort_detectors(list(defls.keys()))
ds = [DValue(ni, defls[ni]) for ni in names]
self.deflections = ds
# gains
gains = an.gains
gs = [DValue(ni, gains.get(ni, 0)) for ni in names]
self.gains = gs
def _sync_measurement(self, meas_analysis, load_aux):
if meas_analysis:
meas = meas_analysis.measurement
if meas:
if meas.script:
self.measurement_script_name = remove_extension(meas.script.name)
self.analysis_type = meas.analysis_type.name
self.mass_spectrometer = meas.mass_spectrometer.name.lower()
self.collection_time_zero_offset = meas.time_zero_offset or 0
if load_aux:
try:
sp = meas.spectrometer_parameters
keys = QTEGRA_SOURCE_KEYS
names = QTEGRA_SOURCE_NAMES
sd = [DValue(n, getattr(sp, k)) for n, k in zip(names, keys)]
self.source_parameters = sd
except AttributeError, e:
# self.source_parameters = [DValue(str(i), i) for i in range(10)]
self.debug('No source parameters available')
defls = meas.deflections
try:
names = sort_detectors([di.detector.name for di in meas.deflections])
self.deflections = [DValue(ni, defls[i].deflection or '---') for i, ni in enumerate(names)]
except AttributeError, e:
# self.deflections = [DValue(str(i), i * 34) for i in range(10)]
self.debug('No deflection available')
def __init__(self, an, *args, **kw):
super(SpectrometerView, self).__init__(*args, **kw)
# source
sp = an.source_parameters
sd = [DValue(k, v) for k, v in sp.items()]
self.source_parameters = sd
# filament
sp = an.filament_parameters
sd = [DValue(k.capitalize(), v) for k, v in sp.items()]
t = sp.get('trap')
e = sp.get('emission')
et = 0
if t and e:
et = e / t
sd.append(DValue('E/T', et))
self.filament_parameters = sd
# deflections
defls = an.deflections
names = sort_detectors(list(defls.keys()))
ds = [DValue(ni, defls[ni]) for ni in names]
self.deflections = ds
# gains
gains = an.gains
gs = [DValue(ni, gains.get(ni, 0)) for ni in names]
self.gains = gs
def set_columns(self, isos, dets):
cs = [('RunID', 'record_id'), ('Date', 'rundate')]
for i in sort_isotopes(isos):
for k in ('rev.', 'fit', 'bs. fit'):
cs.append(('{} {}'.format(i, k), 'iso:{}:{}'.format(k, i)))
for d in sort_detectors(dets):
for k in ('rev.', ):
cs.append(('{} IC {}'.format(d, k), 'ic:{}:{}'.format(k, d)))
self.columns = cs
def set_columns(self, isos, dets):
cs = [('RunID', 'record_id'),
('Date', 'rundate')]
for i in sort_isotopes(isos):
for k in ('rev.', 'fit', 'bs. fit'):
cs.append(('{} {}'.format(i, k), 'iso:{}:{}'.format(k, i)))
for d in sort_detectors(dets):
for k in ('rev.',):
cs.append(('{} IC {}'.format(d, k), 'ic:{}:{}'.format(k, d)))
self.columns = cs
def _get_detectors(self, grps):
def rec_dets(dets, a):
if isinstance(a, InterpretedAgeGroup):
for aa in a.analyses:
rec_dets(dets, aa)
else:
return dets.update({i.detector for i in a.isotopes.values()})
d = set()
for g in grps:
for a in g.analyses:
rec_dets(d, a)
# detectors = {i.detector for g in grps
# for a in g.analyses
# for i in a.isotopes.values()}
return sort_detectors(d)
def _get_detectors(self, grps):
def rec_dets(dets, a):
if isinstance(a, InterpretedAgeGroup):
for aa in a.analyses:
rec_dets(dets, aa)
else:
return dets.update({i.detector for i in a.isotopes.values()})
d = set()
for g in grps:
for a in g.analyses:
rec_dets(d, a)
# detectors = {i.detector for g in grps
# for a in g.analyses
# for i in a.isotopes.values()}
return sort_detectors(d)
def _sync_measurement(self, meas_analysis, load_aux):
if meas_analysis:
meas = meas_analysis.measurement
if meas:
if meas.script:
self.measurement_script_name = remove_extension(
meas.script.name)
self.analysis_type = meas.analysis_type.name
self.mass_spectrometer = meas.mass_spectrometer.name.lower()
self.collection_time_zero_offset = meas.time_zero_offset or 0
if load_aux:
try:
sp = meas.spectrometer_parameters
keys = ('extraction_lens', 'ysymmetry', 'zsymmetry',
'zfocus')
names = ('ExtractionLens', 'Y-Symmetry', 'Z-Symmetry',
'Z-Focus')
sd = [
DValue(n, getattr(sp, k))
for n, k in zip(names, keys)
]
self.source_parameters = sd
except AttributeError, e:
# self.source_parameters = [DValue(str(i), i) for i in range(10)]
self.debug('No source parameters available')
defls = meas.deflections
try:
names = sort_detectors(
[di.detector.name for di in meas.deflections])
self.deflections = [
DValue(ni, defls[i].deflection or '---')
for i, ni in enumerate(names)
]
except AttributeError, e:
# self.deflections = [DValue(str(i), i * 34) for i in range(10)]
self.debug('No deflection available')
def __init__(self, an, *args, **kw):
super(SpectrometerView, self).__init__(*args, **kw)
# source
sp = an.source_parameters
sd = [DValue(n, sp.get(k, NULL_STR)) for n, k in zip(QTEGRA_SOURCE_NAMES,
QTEGRA_SOURCE_KEYS)]
self.source_parameters = sd
# deflections
defls = an.deflections
names = sort_detectors(defls.keys())
ds = [DValue(ni, defls.get(ni, NULL_STR)) for ni in names]
self.deflections = ds
# gains
gains = an.gains
gs = [DValue(ni, gains.get(ni, NULL_STR)) for ni in names]
self.gains = gs
def __init__(self, an, *args, **kw):
super(SpectrometerView, self).__init__(*args, **kw)
# source
sp = an.source_parameters
sd = [
DValue(n, sp.get(k, NULL_STR))
for n, k in zip(QTEGRA_SOURCE_NAMES, QTEGRA_SOURCE_KEYS)
]
self.source_parameters = sd
# deflections
defls = an.deflections
names = sort_detectors(defls.keys())
ds = [DValue(ni, defls.get(ni, NULL_STR)) for ni in names]
self.deflections = ds
# gains
gains = an.gains
gs = [DValue(ni, gains.get(ni, NULL_STR)) for ni in names]
self.gains = gs
def _tool_default(self):
with self.processor.db.session_ctx():
atypes = [ai.name for ai in self.processor.db.get_analysis_types()]
ntypes = ['']
for ai in atypes:
if ai in IC_ANALYSIS_TYPE_MAP:
idx = IC_ANALYSIS_TYPE_MAP[ai]
while idx > len(ntypes):
ntypes.append('')
ntypes[idx] = ai
else:
ntypes.append(ai)
tool = DetectorCalibrationTool()
tool.analysis_types = [''] + ntypes
dets = [det.name for det in self.processor.db.get_detectors()]
tool.detectors = sort_detectors(dets)
return tool
def _tool_default(self):
with self.processor.db.session_ctx():
atypes = [ai.name for ai in self.processor.db.get_analysis_types()]
ntypes = ['']
for ai in atypes:
if ai in IC_ANALYSIS_TYPE_MAP:
idx = IC_ANALYSIS_TYPE_MAP[ai]
while idx > len(ntypes):
ntypes.append('')
ntypes[idx] = ai
else:
ntypes.append(ai)
tool = DetectorCalibrationTool()
tool.analysis_types = [''] + ntypes
dets = [det.name for det in self.processor.db.get_detectors()]
tool.detectors = sort_detectors(dets)
return tool
def _configure_hook(self):
pom = self.plotter_options_manager
if self.unknowns:
unk = self.unknowns[0]
names = []
iso_keys = unk.isotope_keys
if iso_keys:
names.extend(iso_keys)
names.extend(['{}bs'.format(ki) for ki in iso_keys])
names.extend(['{}ic'.format(ki) for ki in iso_keys])
names.extend(ratio(iso_keys))
if unk.analysis_type in (UNKNOWN, COCKTAIL):
names.append(AGE)
names.append(RADIOGENIC_YIELD)
if unk.analysis_type in (DETECTOR_IC, ):
isotopes = unk.isotopes
dets = sort_detectors(
list({i.detector
for i in isotopes.values()}))
for i, di in enumerate(dets):
for j, dj in enumerate(dets):
if j < i:
continue
if di == dj:
continue
names.append('{}/{} DetIC'.format(di, dj))
names.extend([
PEAK_CENTER, ANALYSIS_TYPE, LAB_TEMP, LAB_HUM, EXTRACT_VALUE,
EXTRACT_DURATION, CLEANUP
])
pom.set_names(names)
def detector_keys(self):
return sort_detectors(set((d.detector for d in self.isotopes.values())))
def detector_keys(self):
return sort_detectors(set((d.detector for d in self.isotopes.values())))
def _load_refiso(self, refiso):
#keys = refiso.isotope_keys
dets = [iso.detector for iso in refiso.isotopes.itervalues()]
dets = sort_detectors(dets)
self.tool.detectors = dets
def _load_refiso(self, refiso):
#keys = refiso.isotope_keys
dets = [iso.detector for iso in refiso.isotopes.itervalues()]
dets = sort_detectors(dets)
self.tool.detectors = dets
