def _get_analysis_from_source(self, rid):
if rid.count('-') > 1:
args = rid.split('-')
step = None
lan = '-'.join(args[:-1])
aliquot = args[-1]
else:
lan, aliquot, step = strip_runid(rid)
lan = convert_identifier_to_int(lan)
db = self.source.db
dban = db.get_unique_analysis(lan, aliquot, step)
return dban
def _get_analysis_from_source(self, rid):
if rid.count('-')>1:
args=rid.split('-')
step=None
lan='-'.join(args[:-1])
aliquot=args[-1]
else:
lan, aliquot, step = strip_runid(rid)
lan = convert_identifier_to_int(lan)
db = self.source.db
dban = db.get_unique_analysis(lan, aliquot, step)
return dban
def _map_paths(self, repo, src, dst):
root = os.path.join(paths.repository_dataset_dir, repo)
ps = []
def debug(msg, a, b):
self.debug('{:<20s} {:<35s} >> {}'.format(msg, os.path.relpath(a, root),
os.path.relpath(b, root)))
sp = analysis_path(src, repo)
dp = analysis_path(dst, repo, mode='w')
ps.append(sp)
ps.append(dp)
if not os.path.isfile(sp):
self.warning('not a file {}'.format(sp))
return
dl, da, ds = strip_runid(dst)
jd = dvc_load(sp)
jd['identifier'] = dl
jd['aliquot'] = da
jd['increment'] = alpha_to_int(ds)
dvc_dump(jd, dp)
debug('----------', sp, dp)
for modifier in ('baselines', 'blanks', 'extraction',
'intercepts', 'icfactors', 'peakcenter', '.data'):
sp = analysis_path(src, repo, modifier=modifier)
dp = analysis_path(dst, repo, modifier=modifier, mode='w')
if sp and os.path.isfile(sp):
debug('{:<20s}'.format(modifier), sp, dp)
ps.append(sp)
ps.append(dp)
shutil.move(sp, dp)
return ps
def _assemble_runids(self, d):
rids = d['runids']
return [strip_runid(r) for r in rids]
def _assemble_runids(self, d):
rids = d['runids']
return [strip_runid(r) for r in rids]
