def run(args):
dicts = list(dsv.reader(get_conceptlist(args, path_only=True), delimiter="\t", dicts=True))
out_dict = collections.OrderedDict()
for d in dicts:
out_dict[d[args.column]] = list(d.values())
with dsv.UnicodeWriter(args.output, delimiter='\t') as w:
w.writerow(dicts[0].keys())
w.writerows(out_dict.values())
if not args.output:
print(w.read().decode('utf8'))
def run(args):
# Note: Due to https://github.com/concepticon/pyconcepticon/issues/10 we require specification
# of an output file on Windows:
if platform.system() == 'Windows' and not args.output: # pragma: no cover
raise ParserError(
'On Windows you must specify an output file since printing to the terminal may '
'not work')
args.repos.map(
get_conceptlist(args, path_only=True),
otherlist=_get_conceptlist(args.reference_list, args, path_only=True)
if args.reference_list else None,
out=args.output,
full_search=args.full_search,
language=args.language,
skip_multiple=args.skip_multimatch,
)
def run(args):
for cl in get_conceptlist(args, path_only=True):
print(termcolor.colored(cl, attrs=['bold', 'underline']))
items = list(enumerate(read_dicts(cl), start=2))
for check in CHECKS:
print(
termcolor.colored('Check: {0}'.format(check.__name__),
attrs=['bold']))
if args.verbose and check.__doc__:
print(check.__doc__)
try:
check(items, args)
except Exception as e:
print(
termcolor.colored('{0}: {1}'.format(
e.__class__.__name__, e),
color='red'))
print()
def run(args):
format_set_operation(args.repos.intersection(*get_conceptlist(args)))
def run(args):
# @todo: check output
cl = get_conceptlist(args)
mapped, mapped_ratio, mergers = cl.stats()
for k, v in mergers:
print(k, v)
def run(args):
cl = get_conceptlist(args, path_only=True)
rewrite(cl, Linker(cl.stem, args.repos.conceptsets.values()))