def create_node_graph(output="jpg"):
nodes = {}
switch_edge_ports = {}
edge_list = []
for link in discovery.adjacency_list:
node1_name = longlong_to_octstr(link[0])[6:].replace(':', '')
node2_name = longlong_to_octstr(link[2])[6:].replace(':', '')
nodes[node1_name] = True
nodes[node2_name] = True
edge_list.append((node1_name, node2_name))
switch_edge_ports[(node1_name, node2_name)] = (link[1], link[3])
g = pydot.graph_from_edges(edge_list, directed=True)
# for all edge inferred by discovery, set port labels
for linkt in switch_edge_ports:
edgel = g.get_edge(linkt[0], linkt[1])
if type(edgel) != type([]):
edgel.set('headlabel', str(switch_edge_ports[linkt][1]))
edgel.set('taillabel', str(switch_edge_ports[linkt][0]))
else:
for edge in edgel:
edge.set('headlabel', str(switch_edge_ports[linkt][1]))
edge.set('taillabel', str(switch_edge_ports[linkt][0]))
for node in g.get_node_list():
node.set('style', 'filled,setlinewidth(2)')
node.set('fillcolor', '#ffffcc')
node.set('color', '#99cc99')
node.set('tooltip', 'switch')
return dot_output(g, "pyapps/www/discovery." + output)
def makebranchgrapsh(data, commdct):
"""return the edges for the all branches"""
allgraphs = []
alledges = []
objkey = 'BRANCH'
cnamefield = "Component %s Name"
inletfield = "Component %s Inlet Node Name"
outletfield = "Component %s Outlet Node Name"
numobjects = len(data.dt[objkey])
cnamefields = loops.repeatingfields(data, commdct, objkey, cnamefield)
inletfields = loops.repeatingfields(data, commdct, objkey, inletfield)
outletfields = loops.repeatingfields(data, commdct, objkey, outletfield)
inlts = loops.extractfields(data, commdct,
objkey, [inletfields] * numobjects)
cmps = loops.extractfields(data, commdct,
objkey, [cnamefields] * numobjects)
otlts = loops.extractfields(data, commdct,
objkey, [outletfields] * numobjects)
zipped = list(zip(inlts, cmps, otlts))
tzipped = [transpose2d(item) for item in zipped]
for i in range(len(data.dt[objkey])):
tt = tzipped[i]
# branchname = data.dt[objkey][i][1]
edges = []
for t0 in tt:
edges = edges + [(t0[0], t0[1]), (t0[1], t0[2])]
g=pydot.graph_from_edges(edges, directed=True)
allgraphs.append(g)
alledges = alledges + edges
return alledges
def dump(node):
global filecnt
for c in node:
if c.tag == "dependencies":
if c.get('type') == 'collapsed-dependencies':
filecnt += 1
edge_list = []
governor_iter = c.getiterator('governor')
dependent_iter = c.getiterator('dependent')
# for e in c.getiterator("governor"):
# print(e.tag)
for governor, dependent in zip(governor_iter, dependent_iter):
print('{} {}'.format(governor.text, dependent.text))
edge_list.append([governor.text, dependent.text])
# if c.tag == 'governor':
# print('governor:'.format(c.text))
# elif c.tag == 'dependent':
# print('dependent:'.format(c.text))
g = pydot.graph_from_edges(edge_list, directed=True)
g.write('./pydot{0:02d}.png'.format(filecnt), prog='dot', format='png')
edge_list.clear()
# print(c.keys())
# for i in c:
# if i.tag == 'word':
# who = i.text
# if i.tag == 'NER' and i.text == 'PERSON':
# print(who);who=''
dump(c)
def task_57(root):
"""
57. 係り受け解析
Stanford Core NLPの係り受け解析の結果（collapsed-dependencies）を有向グラフとして可視化せよ．可視化には，係り受け木をDOT言語に変換し，Graphvizを用いるとよい．また，Pythonから有向グラフを直接的に可視化するには，pydotを使うとよい．
"""
"""
具体的には、ROOTと各単語、依存関係の発生している方向を各エッジについて読み込んで、それを描画すればok.
"""
# ひとまず、依存関係を各文章毎に書き出してみる
edge_list = []
for i, sentence in enumerate(root[0][0]):
print i, "番目の文の依存関係は..."
tmp = []
for dependency in sentence[3]:
print dependency[0].text, "->", dependency[1].text
tmp.append(tuple([dependency[0].text, dependency[1].text]))
edge_list.append(tmp)
print "\n"
# 同じディレクトリ以下にgraph_pngという書き出し用のディレクトリを作成。。。
for i, edges in enumerate(edge_list):
g = pydot.graph_from_edges(edges, directed=True)
file_name = "./graph_png/nlp_" + str(i) + ".png"
g.write_png(file_name, prog='dot')
return
def create_node_graph(output = "jpg"):
nodes = {}
switch_edge_ports = {}
edge_list = []
for link in discovery.adjacency_list:
node1_name = longlong_to_octstr(link[0])[6:].replace(':','')
node2_name = longlong_to_octstr(link[2])[6:].replace(':','')
nodes[node1_name] = True
nodes[node2_name] = True
edge_list.append((node1_name, node2_name))
switch_edge_ports[(node1_name, node2_name)] = (link[1], link[3])
g = pydot.graph_from_edges(edge_list, directed=True)
# for all edge inferred by discovery, set port labels
for linkt in switch_edge_ports:
edgel = g.get_edge(linkt[0], linkt[1])
if type(edgel) != type([]):
edgel.set('headlabel',str(switch_edge_ports[linkt][1]))
edgel.set('taillabel',str(switch_edge_ports[linkt][0]))
else:
for edge in edgel:
edge.set('headlabel',str(switch_edge_ports[linkt][1]))
edge.set('taillabel',str(switch_edge_ports[linkt][0]))
for node in g.get_node_list():
node.set('style', 'filled,setlinewidth(2)')
node.set('fillcolor', '#ffffcc')
node.set('color', '#99cc99')
node.set('tooltip', 'switch')
return dot_output(g, "pyapps/www/discovery."+output)
def modalsmap(words,conditionals):
'''
given a speech list in the form of {'YOUNG SIWARD': ['What', 'is','thy',
'name','?'], } creates a graphviz map of conditionals per (important)
character
'''
import pydot
all = []
for char, words in conditionals.items():
for word in words:
all.append((char,word[0].lower()))
graphic = pydot.graph_from_edges(all)
for char in conditionals:
new = pydot.Node(char,color='green',shape='doubleoctagon',fontname='Arial',fontsize='12',rank='source', ranksep = '1.2')
graphic.add_node(new)
for char, word in all:
new = pydot.Node(word,color='purple',shape='note',fontname='Arial',fontsize='8')
graphic.add_node(new)
graphic.set_overlap('TRUE')
graphic.set_splines('True')
graphic.set_suppress_disconnected('TRUE')
graphic.write_png('/tmp/test.png',prog='twopi')
def graph(x, name=None):
"""Display a directed graph of the Component structure of x
:param x: A Component or Manager to graph
:type x: Component or Manager
:param name: A name for the graph (defaults to x's name)
:type name: str
@return: A directed graph representing x's Component sturcture.
@rtype: str
"""
def getname(c):
return "%s-%s" % (c.name, md5(str(hash(c))).hexdigest()[-4:])
if HAS_PYDOT:
graph_edges = []
for (u, v) in edges(x):
graph_edges.append(("\"%s\"" % getname(u), "\"%s\"" % getname(v)))
g = pydot.graph_from_edges(graph_edges, directed=True)
g.write("%s.dot" % (name or x.name))
g.write("%s.png" % (name or x.name), format="png")
def printer(d, x):
return "%s* %s" % (" " * d, x)
return "\n".join(walk(x, printer))
def read_graph(fname):
g = pydot.graph_from_edges([])
# g = read_as_info(g, '%s.as_info' % fname)
g = read_edges(g, "%s.edges" % fname)
return g
def graph_to_pydot(g, **kwds):
""" Return a pydot Graph from a graph.
:Parameters:
- `g`: a graph implementing :class:`openalea.container.interface.graph.IEdgeListGraph` interface.
-`prog`: default is dot. value must one of :
* dot for hierarchical layout of directed graph
* neato and fdp for spring model layouts
* twopi for radial layout
* circo for circular layout
:Returns:
- A pydot graph.
:Examples:
>>> dotg = graph_to_pydot(g)
>>> dotg.write_svg('toto.svg', prog='circo')
"""
edges = set((str(g.source(eid)), str(g.target(eid))) for eid in g.edges())
graph = pydot.graph_from_edges(edges, directed=True)
return graph
def grph(edges,filename):
g=pydot.graph_from_edges(edges)
if filename:
f = filename + ".svg"
else:
f = "graph.svg"
g.write_svg(f, prog='dot')
def plot2d(g, image_name, scale=None, orientation=90):
"""Compute an image of the tree via graphviz.
:Parameters:
- `g` (int) : an MTG object
- `image_name` (str) : output filename e.g. test.png
:Optional parameters:
- `scale` (int): represents the MTG's scale to look at (default max)
- `orientation` (int): orientation angle (default 90)
"""
import pydot
if scale is None:
scale = max(g.scales_iter())
label = g.property('label')
edges = g.iteredges(scale=scale)
if label:
f = lambda id: label.get(id, str(id))
else:
f = str
pydot_graph = pydot.graph_from_edges(
((f(x), f(y)) for x, y in g.iteredges(scale=scale)))
# Attributes
pydot_graph.set('orientation', orientation)
ext = os.path.splitext(image_name)[1].strip('.')
return pydot_graph.write(image_name, prog='dot', format=ext)
def makebranchgrapsh(data, commdct):
"""return the edges for the all branches"""
allgraphs = []
alledges = []
objkey = 'BRANCH'
cnamefield = "Component %s Name"
inletfield = "Component %s Inlet Node Name"
outletfield = "Component %s Outlet Node Name"
numobjects = len(data.dt[objkey])
cnamefields = loops.repeatingfields(data, commdct, objkey, cnamefield)
inletfields = loops.repeatingfields(data, commdct, objkey, inletfield)
outletfields = loops.repeatingfields(data, commdct, objkey, outletfield)
inlts = loops.extractfields(data, commdct, objkey,
[inletfields] * numobjects)
cmps = loops.extractfields(data, commdct, objkey,
[cnamefields] * numobjects)
otlts = loops.extractfields(data, commdct, objkey,
[outletfields] * numobjects)
zipped = zip(inlts, cmps, otlts)
tzipped = [transpose2d(item) for item in zipped]
for i in range(len(data.dt[objkey])):
tt = tzipped[i]
# branchname = data.dt[objkey][i][1]
edges = []
for t0 in tt:
edges = edges + [(t0[0], t0[1]), (t0[1], t0[2])]
g = pydot.graph_from_edges(edges, directed=True)
allgraphs.append(g)
alledges = alledges + edges
return alledges
def plot2d(g, image_name, scale=None, orientation=90 ):
"""Compute an image of the tree via graphviz.
:Parameters:
- `g` (int) : an MTG object
- `image_name` (str) : output filename e.g. test.png
:Optional parameters:
- `scale` (int): represents the MTG's scale to look at (default max)
- `orientation` (int): orientation angle (default 90)
"""
import pydot
if scale is None:
scale = max(g.scales_iter())
label = g.property('label')
edges = g.iteredges(scale=scale)
if label:
f = lambda id: label.get(id, str(id))
else:
f = str
pydot_graph = pydot.graph_from_edges(((f(x), f(y)) for x, y in g.iteredges(scale=scale)))
# Attributes
pydot_graph.set('orientation', orientation)
ext = os.path.splitext(image_name)[1].strip('.')
return pydot_graph.write(image_name, prog='dot',format=ext)
def graph(x, name=None):
"""Display a directed graph of the Component structure of x
:param x: A Component or Manager to graph
:type x: Component or Manager
:param name: A name for the graph (defaults to x's name)
:type name: str
@return: A directed graph representing x's Component sturcture.
@rtype: str
"""
def getname(c):
return "%s-%s" % (c.name, md5(str(hash(c))).hexdigest()[-4:])
if HAS_PYDOT:
graph_edges = []
for (u, v) in edges(x):
graph_edges.append(("\"%s\"" % getname(u), "\"%s\"" % getname(v)))
g = pydot.graph_from_edges(graph_edges, directed=True)
g.write("%s.dot" % (name or x.name))
g.write("%s.png" % (name or x.name), format="png")
def printer(d, x):
return "%s* %s" % (" " * d, x)
return "\n".join(walk(x, printer))
def grph(edges, filename):
g = pydot.graph_from_edges(edges)
if filename:
f = filename + ".svg"
else:
f = "graph.svg"
g.write_svg(f, prog='dot')
def plot_graph(rel, file_name):
import pydot # import pydot or you're not going to get anywhere my friend :D
# first you create a new graph, you do that with pydot.Dot()
#graph = pydot.Dot(graph_type='digraph')
graph = pydot.graph_from_edges(rel, directed = True)
graph.write_png(file_name)
def graph(node, filename=None):
edges = descend(node)
g = pydot.graph_from_edges(edges)
if filename is not None:
f = filename + ".png"
else:
f = "graph.png"
g.write(f, prog="dot", format="png")
def draw_tree(edges, sentence_id):
n = pydot.Node('node')
n.fontname = "AppleGothic.ttf"
n.fontsize = 9
n.fontcolor = "blue"
g = pydot.graph_from_edges(edges, directed=True)
g.add_node(n)
g.write_jpeg('57/{}.jpg'.format(sentence_id), prog='dot')
def graph(node, filename):
edges = descend(node)
g = pydot.graph_from_edges(edges)
if filename:
f = filename + ".png"
else:
f = "graph.png"
g.write_png(f, prog='dot')
def graph(node, filename): edges = descend(node) g=pydot.graph_from_edges(edges) if filename: f = filename + ".png" else: f = "graph.png" g.write_png(f, prog='dot')
def draw_tree(edges):
n = pydot.Node('node')
n.fontname = "AppleGothic.ttf"
n.fontsize = 9
n.fontcolor = "blue"
g = pydot.graph_from_edges(edges, directed=True)
g.add_node(n)
g.write_jpeg('44.jpg', prog='dot')
def showGraph(chunkList): #chunkのリストを受け取って、そこからグラフを表示までやってくれる関数を作る
edges = []
for c in chunkList:
if c.dst != -1:
edges.append((c.getText().encode('utf-8'),chunkList[c.dst].getText().encode('utf-8'))) #cがかかりもと、chunkList[c.dst]がかかり先のchunkインスタンス
g = pydot.graph_from_edges(edges,directed = True)
g.write_jpeg('dot.jpg', prog='dot')
def make_dot(self):
import pydot
edges = []
for node in self.toplevel_nodes:
for claimed in node.claimed_nodes:
edges.append((str(node), str(claimed)))
g = pydot.graph_from_edges(edges)
g.write_jpeg("graph_from_edges_dot.jpg", prog="dot")
def fourtyfour():
import pydot
chunk_list = fourtyone()
chunks = chunk_list[10]
edges = []
for chunk in chunks:
edges.append((int(chunk.dep_id), chunk.dst))
g = pydot.graph_from_edges(edges)
g.write_jpeg('graph_from_edges_dot.jpg', prog='dot')
def view_dynkin_diagram(self, action):
"""
Draw the generalized Dynkin diagram associated to the current basis
"""
# TODO:
# 1) dialog to save jpeg file
# 2) better managment of temporary file
nq = self.__app.Groupoid.braid_for_basis(
self.__app.Groupoid.Bases[self.__app.Groupoid.CurrentBasis])
nq = triang(self.__app.Groupoid.NumberOfParameters, nq,
self.__app.Groupoid.Order)
edges = []
for i in xrange(self.__app.Groupoid.Rank):
edges.append((i + 1, i + 1))
for j in xrange(i + 1, self.__app.Groupoid.Rank):
if notone(self.__app.Groupoid.NumberOfParameters, nq[i][j],
self.__app.Groupoid.Order):
edges.append((i + 1, j + 1))
jpeg = pydot.graph_from_edges(edges)
for i in xrange(self.__app.Groupoid.Rank):
ei = jpeg.get_edge(str(i + 1), str(i + 1))
ei.set('headlabel', nq[i][i])
ei.set('color', 'transparent')
for j in xrange(i + 1, self.__app.Groupoid.Rank):
try:
eij = jpeg.get_edge(str(i + 1), str(j + 1))
eij.set_label(nq[i][j])
except:
pass
nl = jpeg.get_node_list()
for n in nl:
n.set('style', 'filled')
n.set('fillcolor', 'red')
n.set('shape', 'circle')
n.set('fixedsize', 'true')
n.set('width', .3)
jpeg.write_jpeg('dynkin.jpg', prog='neato')
window = gtk.Window(gtk.WINDOW_TOPLEVEL)
window.set_title('Dynkin diagram')
window.set_resizable(False)
window.set_border_width(10)
vbox = gtk.VBox(False, 0)
window.add(vbox)
vbox.show()
image = gtk.Image()
image.set_from_file("dynkin.jpg")
image.show()
vbox.pack_end(image, True, True, 2)
window.show()
def showGraph(chunkList): #chunkのリストを受け取って、そこからグラフを表示までやってくれる関数を作る
edges = []
for c in chunkList:
if c.dst != -1:
edges.append((c.getText().encode('utf-8'),
chunkList[c.dst].getText().encode('utf-8')
)) #cがかかりもと、chunkList[c.dst]がかかり先のchunkインスタンス
g = pydot.graph_from_edges(edges, directed=True)
g.write_jpeg('dot.jpg', prog='dot')
def dependency_to_graph(dependency):
edges = []
for dep in dependency.findall("dep"):
governor = dep.find("governor")
dependent = dep.find("dependent")
edges.append((graph_rep(governor), graph_rep(dependent)))
for e in edges:
print(e)
return pydot.graph_from_edges(edges)
def run():
if len(sys.argv) != 2:
print >> sys.stderr, 'Usage: %s filename' % os.path.basename(sys.argv[0])
return 1
edges = [map(int, l[:-1].split()) for l in open(sys.argv[1])][1:]
g = pydot.graph_from_edges(edges)
basename = sys.argv[1][:sys.argv[1].rfind('.')]
g.write_png(basename + '.png')
def graph(sentence):
edges = []
for chunk in sentence:
if chunk.dst == -1:
continue
direction = (chunk.join_surface(),
sentence[chunk.dst].join_surface())
edges.append(direction)
g = pydot.graph_from_edges(edges, directed=True)
g.write_png('knock44.png')
def run():
if len(sys.argv) != 2:
print >> sys.stderr, 'Usage: %s filename' % os.path.basename(
sys.argv[0])
return 1
edges = [map(int, l[:-1].split()) for l in open(sys.argv[1])][1:]
g = pydot.graph_from_edges(edges)
basename = sys.argv[1][:sys.argv[1].rfind('.')]
g.write_png(basename + '.png')
def graph_title(self, title):
s = set()
l = []
for ref in self.refs:
if not ref[0].startswith("%s." % title):
continue
for to in ref[1]:
if not to.startswith("%s." % title):
continue
s.add((ref[0], to))
l.append((ref[0], to))
g = pydot.graph_from_edges(l, directed=True)
#g.write_jpeg("graphs/%s.jpg" % title)
g.write_pdf("graphs/default/%s.pdf" % title)
g = pydot.graph_from_edges(s, directed=True)
#g.write_jpeg("graphs/%s_no_dups.jpg" % title)
g.write_pdf("graphs/no_dups/%s.pdf" % title)
def create_graph(edges, seq):
graph = pydot.graph_from_edges(edge_list=edges, directed=True)
# フォント設定
n = pydot.Node("node")
n.fontname = "Osaka.ttf"
n.fontsize = 9
graph.add_node(n)
# グラフを出力
graph.write_png("graph/graph_from_edges_dot_" + str(seq) + ".png", prog="dot")
def view_dynkin_diagram(self, action):
"""
Draw the generalized Dynkin diagram associated to the current basis
"""
# TODO:
# 1) dialog to save jpeg file
# 2) better managment of temporary file
nq = self.__app.Groupoid.braid_for_basis(self.__app.Groupoid.Bases[self.__app.Groupoid.CurrentBasis])
nq = triang(self.__app.Groupoid.NumberOfParameters,nq,self.__app.Groupoid.Order)
edges = []
for i in xrange(self.__app.Groupoid.Rank):
edges.append((i+1,i+1))
for j in xrange(i+1,self.__app.Groupoid.Rank):
if notone(self.__app.Groupoid.NumberOfParameters, nq[i][j], self.__app.Groupoid.Order):
edges.append((i+1,j+1))
jpeg=pydot.graph_from_edges(edges)
for i in xrange(self.__app.Groupoid.Rank):
ei = jpeg.get_edge(str(i+1),str(i+1))
ei.set('headlabel',nq[i][i])
ei.set('color','transparent')
for j in xrange(i+1,self.__app.Groupoid.Rank):
try:
eij = jpeg.get_edge(str(i+1),str(j+1))
eij.set_label(nq[i][j])
except:
pass
nl = jpeg.get_node_list()
for n in nl:
n.set('style','filled')
n.set('fillcolor','red')
n.set('shape','circle')
n.set('fixedsize','true')
n.set('width',.3)
jpeg.write_jpeg('dynkin.jpg', prog='neato')
window = gtk.Window(gtk.WINDOW_TOPLEVEL)
window.set_title('Dynkin diagram')
window.set_resizable(False)
window.set_border_width(10)
vbox = gtk.VBox(False, 0)
window.add(vbox)
vbox.show()
image = gtk.Image()
image.set_from_file("dynkin.jpg")
image.show()
vbox.pack_end(image, True, True, 2)
window.show()
def convert_dotlang(tree):
i = 0
root = tree.getroot()
for depend in root.findall('.//dependencies'):
if depend.get('type') == "collapsed-dependencies":
data = []
for dep in depend.findall('dep'):
g = dep.find('governor').text
d = dep.find('dependent').text
data.append((g, d))
g = pydot.graph_from_edges(data)
g.write_jpeg('./fig/sen{}.jpg'.format(i), prog='dot')
i += 1
def graph(self):
"""
Returns a pydot.Dot object representing the dependency graph.
Requires pydot to be available.
"""
import pydot
edges = set()
for p in self.packages.values():
for f in p.files:
for id in f.requires:
f2 = self.get(id)
edges.add( ("--".join([p.key, f.shortname]), "--".join([f2.package.key, f2.shortname])) )
return pydot.graph_from_edges(edges, directed=True)
def vis_dag(chunks):
chunk_names = list(
map(lambda chunk: "_".join([m.surface for m in chunk.morphs]), chunks))
edges = []
for idx, chunk in enumerate(chunks):
if chunk.dst < 0:
continue
edges.append((chunk_names[idx], chunk_names[chunk.dst]))
for idx, edge in enumerate(edges):
print("{}: {}".format(idx, edge))
if True:
g = pydot.graph_from_edges(edges)
g.write_jpeg("44.jpeg", prog="dot")
def convert_dotlang(tree):
i = 0
root = tree.getroot()
for depend in root.findall('.//dependencies'):
if depend.get('type') == "collapsed-dependencies":
data = []
for dep in depend.findall('dep'):
g = dep.find('governor').text
d = dep.find('dependent').text
data.append((g, d))
g = pydot.graph_from_edges(data)
g.write_jpeg('./fig/sen{}.jpg'.format(i), prog='dot')
i += 1
def graph(self):
"""
Returns a pydot.Dot object representing the dependency graph.
Requires pydot to be available.
"""
import pydot
edges = set()
for p in self.packages.values():
for f in p.files:
for id in f.requires:
f2 = self.get(id)
edges.add(("--".join([p.key, f.shortname]),
"--".join([f2.package.key, f2.shortname])))
return pydot.graph_from_edges(edges, directed=True)
def draw_knode(aknode,outfile=''):
"""draw a pretty figure of a knode
"""
import sets,pydot
edges = Edges()
aknode.traverse(edges)
g = pydot.graph_from_edges(edges.edges)
g.add_node(pydot.Node(name='node',color='lightblue2',style='filled'))
g.parent_graph.type = 'digraph'
if outfile == '':
g.write_jpeg('graph_output.jpg', prog='dot')
else:
g.write_jpeg(outfile, prog='dot')
def pyknp_dependency_visualize(comment_list, withstr=False):
for sentence_list in comment_list:
graph = []
for cid, chunk in enumerate(sentence_list):
if chunk.dst != -1:
src_str = str(cid) + ":" + chunk.midasi
dst_str = str(
chunk.dst) + ":" + sentence_list[chunk.dst].midasi
graph.append((src_str, dst_str))
if withstr:
print("{} => {}".format(src_str, dst_str))
g = pydot.graph_from_edges(graph, directed=True)
#g.write_png("result.png")
display_png(Image(g.create_png()))
def pyknp_dependency_visualize(result_list, withstr=False):
for result in result_list:
graph = []
bnst_dic = dict((x.bnst_id, x) for x in result.bnst_list())
for bnst in result.bnst_list():
if bnst.parent_id != -1:
src_str = "".join(mrph.midasi for mrph in bnst.mrph_list())
dst_str = "".join(mrph.midasi for mrph in bnst_dic[bnst.parent_id].mrph_list())
graph.append((src_str, dst_str))
if withstr:
print("{} => {}".format(src_str,dst_str))
g=pydot.graph_from_edges(graph,directed=True)
#g.write_png("result.png")
display_png(Image(g.create_png()))
def printGraph(ingraph,outputname='out.jpg'):
"""Gets an NetworkGraph object and 'prints' it in jpg file."""
print 'Building DNS cache...'
dnscache={}
for t in ingraph.graph.keys():
if not t in dnscache.keys() and not t==OurNode:
try: dnscache[t]=socket.gethostbyaddr(t)[0]
#added gaierror to avoid exceptions on grapher nodes:
except(socket.herror,socket.gaierror): pass
if MakeASNLookup:
print 'Building ASN cache...'
ascache={}
for t in ingraph.graph.keys():
if not t in ascache.keys() and not t==OurNode:
try: ascache[t]=query.getASN(t)
except:pass
if MakeCountryLookup:
print 'Building country code cache...'
ccache={}
for t in ingraph.graph.keys():
if not t in ccache.keys() and not t==OurNode:
try: ccache[t]=query.getCountry(t)
except:pass
edges=[]
print 'Creating the output image...'
for k in ingraph.graph.keys():
for t in ingraph.graph[k]:
if not (k,t) in edges:
edge1=t
edge2=k
if t in dnscache.keys():
edge1=dnscache[t]
if k in dnscache.keys():
edge2=dnscache[k]
if MakeASNLookup:
if t in ascache.keys():
edge1+=" ["+str(ascache[t])+"]"
if k in ascache.keys():
edge2+=" ["+str(ascache[k])+"]"
if MakeCountryLookup:
if t in ccache.keys():
edge1+=" ["+str(ccache[t])+"]"
if k in ascache.keys():
edge2+=" ["+str(ccache[k])+"]"
if not (edge2,edge1) in edges:edges.append((edge1,edge2))
g=pydot.graph_from_edges(edges)
g.dpi=GraphDpi
g.write_jpeg(outputname, prog='dot')
def solve(self):
'''
insert your code
'''
pcttc = ParseCabochaTextToChunks()
text = pcttc.parse('neko.txt.cabocha')
sentence = text[7] # As the dependency graph becomes too complex, we visualize only 8th sentence in this time
edges = []
for chunk in sentence:
if chunk.dst is not None:
edges.append((chunk.get_text(), sentence[chunk.dst].get_text()))
g = pydot.graph_from_edges(edges)
g.write_jpeg('44.jpg', prog='dot')
return None
def cabocha_dependency_visualize(novel_list, withstr=False):
for sentence_list in novel_list:
graph = []
for chunk in sentence_list:
src_str=chunk.surfaces()
dst_str=""
if chunk.dst!=-1:
dst_str=sentence_list[chunk.dst].surfaces()
if src_str!="" and dst_str!="":
graph.append((src_str,dst_str))
if withstr:
print("{} => {}".format(src_str,dst_str))
g=pydot.graph_from_edges(graph,directed=True)
#g.write_png("result.png")
display_png(Image(g.create_png()))
def plot_graph():
import pydot
edges_list = []
metadata = MetadataHistory()
for obj in ModelObjectIterator():
history = metadata.getHistory(obj.getID())
for i in range(len(history) - 1):
f = lambda x: "%s -> %s" % (obj.getID(), x.update_controller_action)
edge = (f(history[i]), f(history[i + 1]))
edges_list.append(edge)
graph = pydot.graph_from_edges(edges_list, directed=True)
graph.write_png("/home/danito/.faraday/history.png")
def plot_graph():
import pydot
edges_list = []
metadata = MetadataHistory()
for obj in ModelObjectIterator():
history = metadata.getHistory(obj.getID())
for i in range(len(history) - 1):
f = lambda x: "%s -> %s" % (obj.getID(), x.update_controller_action
)
edge = (f(history[i]), f(history[i + 1]))
edges_list.append(edge)
graph = pydot.graph_from_edges(edges_list, directed=True)
graph.write_png("/home/danito/.faraday/history.png")
def dependency_tree(sentence, filename="output/44.png"):
edge = []
for chunk in sentence:
if not chunk.srcs:
continue
for i in chunk.srcs:
source_chunk = sentence[i]
target_chunk = chunk
if source_chunk.phrase_wo_mark() and target_chunk.phrase_wo_mark():
edge.append([
source_chunk.phrase_wo_mark(),
target_chunk.phrase_wo_mark()
])
graph = pydot.graph_from_edges(edge)
graph.write_png(filename)
def main(f):
tree = ET.parse(f)
elem = tree.getroot()
for dependencies in elem.findall(".//dependencies"):
edge = []
if dependencies.attrib.get("type") == "collapsed-dependencies":
for dep in dependencies.findall(".//dep"):
dep_tuple = (dep[0].text,dep[1].text)
if "," in dep_tuple or "." in dep_tuple:
pass
else:
edge.append(dep_tuple)
if len(edge) != 0:
g = pydot.graph_from_edges(edge, directed = True)
g.write_jpeg("test_graph.jpg", prog='dot')
#初めの分だけグラフを作りたかったので
break
def graph(x, name=None):
"""Display a directed graph of the Component structure of x
@param x: A Component or Manager to graph
@type x: Component or Manager
@param name: A name for the graph (defaults to x's name)
@type name: str
@return: A directed graph representing x's Component sturcture.
@rtype: str
"""
try:
import pydot
graph_edges = []
nodes = []
names = []
for (u, v) in edges(x):
if v.name in names and v not in nodes:
i = 1
new_name = "%s-%d" % (v.name, i)
while new_name in names:
i += 1
new_name = "%s-%d" % (v.name, i)
graph_edges.append((u.name, new_name))
else:
nodes.append(u)
nodes.append(v)
names.append(v.name)
graph_edges.append((u.name, v.name))
g = pydot.graph_from_edges(graph_edges, directed=True)
g.write("%s.dot" % (name or x.name))
g.write("%s.png" % (name or x.name), format="png")
except ImportError:
pass
except:
raise
def printer(d, x):
return "%s* %s" % (" " * d, x)
return "\n".join(walk(x, printer))
def graph(x, name=None):
"""Display a directed graph of the Component structure of x
@param x: A Component or Manager to graph
@type x: Component or Manager
@param name: A name for the graph (defaults to x's name)
@type name: str
@return: A directed graph representing x's Component sturcture.
@rtype: str
"""
try:
import pydot
graph_edges = []
nodes = []
names = []
for (u, v) in edges(x):
if v.name in names and v not in nodes:
i = 1
new_name = "%s-%d" % (v.name, i)
while new_name in names:
i += 1
new_name = "%s-%d" % (v.name, i)
graph_edges.append((u.name, new_name))
else:
nodes.append(u)
nodes.append(v)
names.append(v.name)
graph_edges.append((u.name, v.name))
g = pydot.graph_from_edges(graph_edges, directed=True)
g.write("%s.dot" % (name or x.name))
g.write("%s.png" % (name or x.name), format="png")
except ImportError:
pass
except:
raise
def printer(d, x):
return "%s* %s" % (" " * d, x)
return "\n".join(walk(x, printer))
def solve(self):
'''
insert your code
'''
pcttc = ParseCabochaTextToChunks()
text = pcttc.parse('neko.txt.cabocha')
sentence = text[
7] # As the dependency graph becomes too complex, we visualize only 8th sentence in this time
edges = []
for chunk in sentence:
if chunk.dst is not None:
edges.append(
(chunk.get_text(), sentence[chunk.dst].get_text()))
g = pydot.graph_from_edges(edges)
g.write_jpeg('44.jpg', prog='dot')
return None
def tree_to_pydot(t, root=None, **kwds):
""" Return a pydot directed Graph from a tree.
:Parameters:
- `t`: a tree implementing :class:`openalea.container.interface.tree.ITree` interface.
:Returns:
- A pydot graph.
:Examples:
>>> dotg = tree_to_pydot(t)
>>> dotg.write_svg('toto.svg', prog='dot')
"""
if root is None:
root = t.root
edges = set((str(t.parent(vid)), str(vid)) for vid in pre_order(t, root) if vid != root)
graph = pydot.graph_from_edges(edges, directed=True)
return graph
def toDot(self):
import pydot
edges = []
edg_keys = []
for g in self.vertices:
g_lab = str(g) + " - " + (self.vertice_labelling[g])
for g2 in self.edges[g]:
g2_lab = str(g2) + " - " + (self.vertice_labelling[g2])
edges.append((g_lab,g2_lab))
edg_keys.append((g,g2))
#print edges,edg_keys
g = pydot.graph_from_edges(edges,directed=True)
for e in g.edge_list:
i = edges.index((e.get_source(),e.get_destination()))
if self.edge_labelling[edg_keys[i]]=="+":
e.set_label("+")
elif self.edge_labelling[edg_keys[i]]=="-":
e.set_label("-")
e.set_arrowhead("tee")
else: # no info
e.set_label(self.edge_labelling[edg_keys[i]])
e.set_arrowhead("none")
return g
def rebuildDAG(self):
# we will only build a DAG with the nodes that actually have a relationship
# all single nodes are omitted, this includes the ones without a known DOI
allDois = []
DAG = []
papers = KKDocument.objects.all()
for p in papers:
if p.doi != "": allDois.append( p.doi )
allDois = uniq( allDois )
for doi in allDois:
doc = get_document(doi)
for c in doc.citings.split(';'):
if c in allDois:
child = self.cleanAndWrapStr(get_document(c).title)
parent = self.cleanAndWrapStr(get_document(doi).title)
DAG.append( (parent, child) )
import pydot
g = pydot.graph_from_edges(DAG, directed=True)
g.write_jpeg('dag.jpg', prog='dot')
import pydot
class Lista(list):
def __init__(self):
list.__init__(self)
def edges(self):
lista=[]
for n in range(len(self)-1):
lista.append((self.__getitem__(n),self.__getitem__(n+1)))
return lista
hola=Lista()
hola+=[1,2,3,4,5,1,2,3,1,23,1,4,5,6]
edges=hola.edges()
g=pydot.graph_from_edges(edges)
g.write_png('graph_from_edges_dot.png', prog='dot')
from q53 import *
import pydot
if __name__ == "__main__":
root = readXml("nlp_sample.txt.xml") #xmlから木構造を作る
edges = []
for sentences in root.iter("sentences"):
for sentence in sentences.iter("sentence"):
sentenceId = sentence.get("id")
for dependency in sentence.iter("dependencies"):
if dependency.get("type") == "collapsed-dependencies":
for dep in dependency.iter("dep"):
type = dep.get("type")
gov = "%s(%s,%s)" % (dep.find("governor").text,sentenceId,dep.find("governor").get("idx"))
dependent = "%s(%s,%s)" % (dep.find("dependent").text,sentenceId,dep.find("dependent").get("idx"))
edges.append((gov,dependent))
#graph = pydot.Doc(graph_type='')
#graph.add_edge(edge)
#graph.write_png("aaa.png")
#StanfordCoreNLPではtodotformat()として、出力をdot言語にできる
g = pydot.graph_from_edges(edges,directed=True)
g.write_jpeg("dot.jpg",prog = "dot")
def makeplantloop(iddfile, fname):
"""make the plant loop"""
data, commdct = readidf.readdatacommdct(fname, iddfile=iddfile)
# in plantloop get:
# demand inlet, outlet, branchlist
# supply inlet, outlet, branchlist
plantloops = loops.plantloopfields(data, commdct)
plantloop = plantloops[0]
#
# supply barnchlist
# branch1 -> inlet, outlet
# branch2 -> inlet, outlet
# branch3 -> inlet, outlet
sbranchlist = plantloop[3]
if sbranchlist.strip() != "":
sbranches = loops.branchlist2branches(data, commdct, sbranchlist)
s_in_out = [loops.branch_inlet_outlet(data, commdct,
sbranch) for sbranch in sbranches]
sbranchinout = dict(zip(sbranches, s_in_out))
dbranchlist = plantloop[6]
if dbranchlist.strip() != "":
dbranches = loops.branchlist2branches(data, commdct, dbranchlist)
d_in_out = [loops.branch_inlet_outlet(data, commdct,
dbranch) for dbranch in dbranches]
dbranchinout = dict(zip(dbranches, d_in_out))
#
# splitters
# inlet
# outlet1
# outlet2
splitters = loops.splitterfields(data, commdct)
#
# mixer
# outlet
# inlet1
# inlet2
mixers = loops.mixerfields(data, commdct)
#
# supply barnchlist
# branch1 -> inlet, outlet
# branch2 -> inlet, outlet
# branch3 -> inlet, outlet
#
# CONNET INLET OUTLETS
edges = []
# get all branches
branchkey = "branch".upper()
branches = data.dt[branchkey]
branch_i_o = {}
for br in branches:
br_name = br[1]
in_out = loops.branch_inlet_outlet(data, commdct, br_name)
branch_i_o[br_name] = dict(zip(["inlet", "outlet"], in_out))
for br_name, in_out in branch_i_o.items():
edges.append((in_out["inlet"], br_name))
edges.append((br_name, in_out["outlet"]))
# connect splitter to nodes
for splitter in splitters:
# splitter_inlet = inletbranch.node
splittername = splitter[0]
inletbranchname = splitter[1]
splitter_inlet = branch_i_o[inletbranchname]["outlet"]
# edges = splitter_inlet -> splittername
edges.append((splitter_inlet, splittername))
# splitter_outlets = ouletbranches.nodes
outletbranchnames = [br for br in splitter[2:]]
splitter_outlets = [branch_i_o[br]["inlet"] for br in outletbranchnames]
# edges = [splittername -> outlet for outlet in splitter_outlets]
moreedges = [(splittername, outlet) for outlet in splitter_outlets]
edges = edges + moreedges
for mixer in mixers:
# mixer_outlet = outletbranch.node
mixername = mixer[0]
outletbranchname = mixer[1]
mixer_outlet = branch_i_o[outletbranchname]["inlet"]
# edges = mixername -> mixer_outlet
edges.append((mixername, mixer_outlet))
# mixer_inlets = inletbranches.nodes
inletbranchnames = [br for br in mixer[2:]]
mixer_inlets = [branch_i_o[br]["outlet"] for br in inletbranchnames]
# edges = [mixername -> inlet for inlet in mixer_inlets]
moreedges = [(inlet, mixername) for inlet in mixer_inlets]
edges = edges + moreedges
# connect demand and supply side
for plantloop in plantloops:
supplyinlet = plantloop[1]
supplyoutlet = plantloop[2]
demandinlet = plantloop[4]
demandoutlet = plantloop[5]
# edges = [supplyoutlet -> demandinlet, demandoutlet -> supplyinlet]
moreedges = [(supplyoutlet, demandinlet), (demandoutlet, supplyinlet)]
edges = edges + moreedges
g=pydot.graph_from_edges(edges, directed=True)
return g