Python is_connected Examples

Example #1

    def test_connected_count_matrix(self):
        """Directed"""
        is_c = is_connected(self.T_not_connected)
        self.assertFalse(is_c)

        is_c = is_connected(self.T_connected)
        self.assertTrue(is_c)
        """Undirected"""
        is_c = is_connected(self.T_not_connected, directed=False)
        self.assertTrue(is_c)

Example #2

File: test_assessment.py Project: ismaelresp/PyEMMA

    def test_connected_count_matrix(self):
        """Directed"""
        is_c = is_connected(self.T_not_connected)
        self.assertFalse(is_c)

        is_c = is_connected(self.T_connected)
        self.assertTrue(is_c)

        """Undirected"""
        is_c = is_connected(self.T_not_connected, directed=False)
        self.assertTrue(is_c)

Example #3

File: test_msm.py Project: ismaelresp/PyEMMA

    def _transition_matrix(self, msm):
        P = msm.transition_matrix
        # should be ndarray by default
        assert (isinstance(P, np.ndarray))
        # shape
        assert (np.all(P.shape == (msm.nstates, msm.nstates)))
        # test transition matrix properties
        import pyemma.msm.analysis as msmana

        assert (msmana.is_transition_matrix(P))
        assert (msmana.is_connected(P))
        # REVERSIBLE
        if msm.is_reversible:
            assert (msmana.is_reversible(P))

Example #4

File: test_msm.py Project: ismaelresp/PyEMMA

    def _transition_matrix(self, msm):
        P = msm.transition_matrix
        # should be ndarray by default
        assert (isinstance(P, np.ndarray))
        # shape
        assert (np.all(P.shape == (msm.nstates, msm.nstates)))
        # test transition matrix properties
        import pyemma.msm.analysis as msmana

        assert (msmana.is_transition_matrix(P))
        assert (msmana.is_connected(P))
        # REVERSIBLE
        if msm.is_reversible:
            assert (msmana.is_reversible(P))

Example #5

 def test_is_connected(self):
     self.assertTrue(is_connected(self.T))
     self.assertTrue(is_connected(self.T, directed=False))

Example #6

File: test_assessment.py Project: ismaelresp/PyEMMA

 def test_is_connected(self):
     self.assertTrue(is_connected(self.T))
     self.assertTrue(is_connected(self.T, directed=False))