def test_carbon(self):
instance = FattyAcid("FAX", 20, 2, 0, LipidFaBondType.ESTER, False, 1)
assert 20 == instance.num_carbon
elements = instance.get_elements()
assert elements[Element.C] == 20
assert elements[Element.H] == 35
assert elements[Element.O] == 1
assert elements[Element.N] == 0
def new_fa(self, node):
if self.unspecified_ether:
lipid_FA_bond_type = LipidFaBondType.ETHER_UNSPECIFIED
self.unspecified_ether = False
else:
lipid_FA_bond_type = LipidFaBondType.ESTER
self.current_fa = FattyAcid("FA%i" % (len(self.fa_list) + 1), 2, 0, 0,
lipid_FA_bond_type, False, 0, {})
def new_lcb(self, node):
self.lcb = FattyAcid("LCB", 2, 0, 0, LipidFaBondType.ESTER, True, 1,
{})
self.current_fa = self.lcb
def new_fa(self, node):
self.current_fa = FattyAcid("FA%i" % (len(self.fa_list) + 1), 2, 0, 0,
LipidFaBondType.ESTER, False, 0, {})
def test_wrong_hydroxyl(self):
instance = FattyAcid("FAX", 2, 0, -1, LipidFaBondType.UNDEFINED, False,
1)
def test_hydroxyl(self):
instance = FattyAcid("FAX", 2, 0, 1, LipidFaBondType.UNDEFINED, False,
1)
assert 1 == instance.num_hydroxyl
def test_wrong_db(self):
instance = FattyAcid("FAX", 1, 0, 0, LipidFaBondType.UNDEFINED, False,
1)
def test_wrong_position(self):
instanceZero = FattyAcid("FA1", 20, 2, 0, LipidFaBondType.UNDEFINED,
False, -2)
def test_position(self):
instance = FattyAcid("FAX", 2, 0, 0, LipidFaBondType.UNDEFINED, False,
1)
assert 1 == instance.position
def test_name(self):
instance = FattyAcid("FAX", 2, 0, 0, LipidFaBondType.UNDEFINED, False,
0)
assert "FAX" == instance.name
def test_wrong_bond_type(self):
instanceZero = FattyAcid("FA1", 2, -1, 0, LipidFaBondType.UNDEFINED,
False, 0)
def test_instanceOne(self):
instanceOne = FattyAcid("FA1", 2, 1, 0, LipidFaBondType.UNDEFINED,
False, 0)
assert 1 == instanceOne.num_double_bonds
def test_instanceZero(self):
instanceZero = FattyAcid("FA1", 2, 0, 0, LipidFaBondType.UNDEFINED,
False, 0)
assert 0 == instanceZero.num_double_bonds