def _read_dmat_helper(args):
i, base_path, dmat_prefix = args
filename = os.path.join(base_path, dmat_prefix + str(i) + '.dmat')
if (i % 13 == 0):
print('.', end='', flush=True)
displacements = igl.eigen.MatrixXd()
igl.readDMAT(filename, displacements)
return e2p(displacements)
def read_dmat(i):
#filename = 'data-armadillo/verts%d.ply' % (i + 1)
filename = base_path + 'displacements_%d.dmat' % i
if (i % 13 == 0):
print('.', end='', flush=True)
verts = igl.eigen.MatrixXd()
igl.readDMAT(filename, verts, _i, _d, _d)
return e2p(verts)
def load_displacements_and_energy(model_root,
use_reencoded=False,
use_extra_samples=False):
from keras.models import Model, load_model
encoder = load_model(os.path.join(model_root, 'keras_models/encoder.hdf5'))
U = igl.eigen.MatrixXd()
igl.readDMAT(
os.path.join(model_root, 'pca_results/ae_pca_components.dmat'), U)
if not use_reencoded and not use_extra_samples:
training_data_path = os.path.join(model_root, 'training_data/training')
displacements = my_utils.load_displacement_dmats_to_numpy(
training_data_path)
flatten_displ, unflatten_displ = my_utils.get_flattners(displacements)
encoded_displacements = encoder.predict(
flatten_displ(displacements) @ U)
energies = my_utils.load_energy_dmats_to_numpy(training_data_path)
if use_reencoded:
reencoded_training_data_path = os.path.join(
model_root, 'augmented_training_data/reencoded/')
displacements_path = os.path.join(reencoded_training_data_path,
'displacements.dmat')
enc_displacements_path = os.path.join(reencoded_training_data_path,
'enc_displacements.dmat')
energies_path = os.path.join(reencoded_training_data_path,
'energies.dmat')
displacements = my_utils.read_double_dmat_to_numpy(displacements_path)
encoded_displacements = my_utils.read_double_dmat_to_numpy(
enc_displacements_path)
energies = my_utils.read_double_dmat_to_numpy(energies_path)
if use_extra_samples:
sampled_training_data_path = os.path.join(
model_root, 'augmented_training_data/sampled/')
displacements_path = os.path.join(sampled_training_data_path,
'displacements.dmat')
enc_displacements_path = os.path.join(sampled_training_data_path,
'enc_displacements.dmat')
energies_path = os.path.join(sampled_training_data_path,
'energies.dmat')
displacements = numpy.append(
displacements,
my_utils.read_double_dmat_to_numpy(displacements_path),
axis=0)
encoded_displacements = numpy.append(
encoded_displacements,
my_utils.read_double_dmat_to_numpy(enc_displacements_path),
axis=0)
energies = numpy.append(
energies,
my_utils.read_double_dmat_to_numpy(energies_path),
axis=0)
return displacements, encoded_displacements, energies
def load_base_vert_and_face_dmat_to_numpy(base_path):
""" Returns a tuple (verts, faces) """
verts_filename = os.path.join(base_path, 'base_verts.dmat')
faces_filename = os.path.join(base_path, 'base_faces.dmat')
verts = igl.eigen.MatrixXd()
faces = igl.eigen.MatrixXi()
igl.readDMAT(verts_filename, verts)
igl.readDMAT(faces_filename, faces)
return e2p(verts), e2p(faces)
igl.readOBJ(TUTORIAL_SHARED_PATH + "arm.obj", V, F)
U = igl.eigen.MatrixXd(V)
igl.readTGF(TUTORIAL_SHARED_PATH + "arm.tgf", C, BE)
# retrieve parents for forward kinematics
igl.directed_edge_parents(BE, P)
rest_pose = igl.RotationList()
igl.directed_edge_orientations(C, BE, rest_pose)
poses = [[igl.eigen.Quaterniond.Identity() for i in range(4)] for j in range(4)]
twist = igl.eigen.Quaterniond(pi, igl.eigen.MatrixXd([1, 0, 0]))
poses[1][2] = rest_pose[2] * twist * rest_pose[2].conjugate()
bend = igl.eigen.Quaterniond(-pi * 0.7, igl.eigen.MatrixXd([0, 0, 1]))
poses[3][2] = rest_pose[2] * bend * rest_pose[2].conjugate()
igl.readDMAT(TUTORIAL_SHARED_PATH + "arm-weights.dmat", W)
igl.lbs_matrix(V, W, M)
# Plot the mesh with pseudocolors
viewer = igl.viewer.Viewer()
viewer.data.set_mesh(U, F)
viewer.data.set_edges(C, BE, sea_green)
viewer.core.show_lines = False
viewer.core.show_overlay_depth = False
viewer.core.line_width = 1
viewer.core.trackball_angle.normalize()
viewer.callback_pre_draw = pre_draw
viewer.callback_key_down = key_down
viewer.core.is_animating = False
viewer.core.camera_zoom = 2.5
viewer.core.animation_max_fps = 30.0
from shared import TUTORIAL_SHARED_PATH, check_dependencies dependencies = ["glfw"] check_dependencies(dependencies) V = igl.eigen.MatrixXd() F = igl.eigen.MatrixXi() # Load a mesh in OFF format igl.readOFF(TUTORIAL_SHARED_PATH + "cheburashka.off", V, F) # Read scalar function values from a file, U: #V by 1 U = igl.eigen.MatrixXd() igl.readDMAT(TUTORIAL_SHARED_PATH + "cheburashka-scalar.dmat", U) U = U.col(0) # Compute gradient operator: #F*3 by #V G = igl.eigen.SparseMatrixd() igl.grad(V, F, G) # Compute gradient of U GU = (G * U).MapMatrix(F.rows(), 3) # Compute gradient magnitude GU_mag = GU.rowwiseNorm() viewer = igl.glfw.Viewer() viewer.data().set_mesh(V, F)
sea_green = igl.eigen.MatrixXd([[70. / 255., 252. / 255., 167. / 255.]])
selected = 0
pose = igl.RotationList()
anim_t = 1.0
anim_t_dir = -0.03
igl.readMESH(TUTORIAL_SHARED_PATH + "hand.mesh", V, T, F)
U = igl.eigen.MatrixXd(V)
igl.readTGF(TUTORIAL_SHARED_PATH + "hand.tgf", C, BE)
# Retrieve parents for forward kinematics
igl.directed_edge_parents(BE, P)
# Read pose as matrix of quaternions per row
igl.readDMAT(TUTORIAL_SHARED_PATH + "hand-pose.dmat", Q)
igl.column_to_quats(Q, pose)
assert (len(pose) == BE.rows())
# List of boundary indices (aka fixed value indices into VV)
b = igl.eigen.MatrixXi()
# List of boundary conditions of each weight function
bc = igl.eigen.MatrixXd()
igl.boundary_conditions(V, T, C, igl.eigen.MatrixXi(), BE, igl.eigen.MatrixXi(), b, bc)
# compute BBW weights matrix
bbw_data = igl.BBWData()
# only a few iterations for sake of demo
bbw_data.active_set_params.max_iter = 8
bbw_data.verbosity = 2
U = igl.eigen.MatrixXd(V)
igl.readTGF(TUTORIAL_SHARED_PATH + "arm.tgf", C, BE)
# retrieve parents for forward kinematics
igl.directed_edge_parents(BE, P)
rest_pose = igl.RotationList()
igl.directed_edge_orientations(C, BE, rest_pose)
poses = [[igl.eigen.Quaterniond.Identity() for i in range(4)]
for j in range(4)]
twist = igl.eigen.Quaterniond(pi, igl.eigen.MatrixXd([1, 0, 0]))
poses[1][2] = rest_pose[2] * twist * rest_pose[2].conjugate()
bend = igl.eigen.Quaterniond(-pi * 0.7, igl.eigen.MatrixXd([0, 0, 1]))
poses[3][2] = rest_pose[2] * bend * rest_pose[2].conjugate()
igl.readDMAT(TUTORIAL_SHARED_PATH + "arm-weights.dmat", W)
igl.lbs_matrix(V, W, M)
# Plot the mesh with pseudocolors
viewer = igl.viewer.Viewer()
viewer.data.set_mesh(U, F)
viewer.data.set_edges(C, BE, sea_green)
viewer.core.show_lines = False
viewer.core.show_overlay_depth = False
viewer.core.line_width = 1
viewer.core.trackball_angle.normalize()
viewer.callback_pre_draw = pre_draw
viewer.callback_key_down = key_down
viewer.core.is_animating = False
viewer.core.camera_zoom = 2.5
viewer.core.animation_max_fps = 30.0
def read_double_dmat_to_numpy(path):
U = igl.eigen.MatrixXd()
igl.readDMAT(path, U)
return e2p(U)
if key == ord(' '):
viewer.core.is_animating = not viewer.core.is_animating
return True
if key == ord('D') or key == ord('d'):
deformation_field = not deformation_field
return True
return False
igl.readOBJ(TUTORIAL_SHARED_PATH + "decimated-max.obj", V, F)
U = igl.eigen.MatrixXd(V)
# S(i) = j: j<0 (vertex i not in handle), j >= 0 (vertex i in handle j)
S = igl.eigen.MatrixXd()
igl.readDMAT(TUTORIAL_SHARED_PATH + "decimated-max-selection.dmat", S)
S = S.castint()
b = igl.eigen.MatrixXd([[t[0] for t in [(i, S[i]) for i in range(0, V.rows())] if t[1] >= 0]]).transpose().castint()
# Boundary conditions directly on deformed positions
U_bc.resize(b.rows(), V.cols())
V_bc.resize(b.rows(), V.cols())
for bi in range(0, b.rows()):
V_bc.setRow(bi, V.row(b[bi]))
if S[b[bi]] == 0:
# Don't move handle 0
U_bc.setRow(bi, V.row(b[bi]))
import pyigl as igl from shared import TUTORIAL_SHARED_PATH, check_dependencies dependencies = ["glfw"] check_dependencies(dependencies) V = igl.eigen.MatrixXd() F = igl.eigen.MatrixXi() # Load a mesh in OFF format igl.readOFF(TUTORIAL_SHARED_PATH + "cheburashka.off", V, F) # Read scalar function values from a file, U: #V by 1 U = igl.eigen.MatrixXd() igl.readDMAT(TUTORIAL_SHARED_PATH + "cheburashka-scalar.dmat", U) U = U.col(0) # Compute gradient operator: #F*3 by #V G = igl.eigen.SparseMatrixd() igl.grad(V, F, G) # Compute gradient of U GU = (G * U).MapMatrix(F.rows(), 3) # Compute gradient magnitude GU_mag = GU.rowwiseNorm() viewer = igl.glfw.Viewer() viewer.data().set_mesh(V, F)
if key == ord(' '):
viewer.core.is_animating = not viewer.core.is_animating
return True
if key == ord('D') or key == ord('d'):
deformation_field = not deformation_field
return True
return False
igl.readOBJ(TUTORIAL_SHARED_PATH + "decimated-max.obj", V, F)
U = igl.eigen.MatrixXd(V)
# S(i) = j: j<0 (vertex i not in handle), j >= 0 (vertex i in handle j)
S = igl.eigen.MatrixXd()
igl.readDMAT(TUTORIAL_SHARED_PATH + "decimated-max-selection.dmat", S)
S = S.castint()
b = igl.eigen.MatrixXi([[
t[0] for t in [(i, S[i]) for i in range(0, V.rows())] if t[1] >= 0
]]).transpose()
# Boundary conditions directly on deformed positions
U_bc.resize(b.rows(), V.cols())
V_bc.resize(b.rows(), V.cols())
for bi in range(0, b.rows()):
V_bc.setRow(bi, V.row(b[bi]))
if S[b[bi]] == 0:
if key == ord(' '):
viewer.core.is_animating = not viewer.core.is_animating
return True
if key == ord('D') or key == ord('d'):
deformation_field = not deformation_field
return True
return False
igl.readOBJ("../../tutorial/shared/decimated-max.obj", V, F)
U = igl.eigen.MatrixXd(V)
# S(i) = j: j<0 (vertex i not in handle), j >= 0 (vertex i in handle j)
S = igl.eigen.MatrixXd()
igl.readDMAT("../../tutorial/shared/decimated-max-selection.dmat", S)
S = S.castint()
b = igl.eigen.MatrixXi([[
t[0] for t in [(i, S[i]) for i in range(0, V.rows())] if t[1] >= 0
]]).transpose()
# Boundary conditions directly on deformed positions
U_bc.resize(b.rows(), V.cols())
V_bc.resize(b.rows(), V.cols())
for bi in range(0, b.rows()):
V_bc.setRow(bi, V.row(b[bi]))
if (S[b[bi]] == 0):
def reencode_and_augment_training_data(model_root, num_extra_per_poses=0):
"""
Loads existing traing data and generates new encoding / energy vector pairs for
1. Energy evalutated on decoded displacements of training data.
2. Energy evaluated on poses sampled around the encoded training poses.
"""
training_data_path = os.path.join(model_root, 'training_data/training')
U = igl.eigen.MatrixXd()
igl.readDMAT(
os.path.join(model_root, 'pca_results/ae_pca_components.dmat'), U)
displacements = my_utils.load_displacement_dmats_to_numpy(
training_data_path)
flatten_displ, unflatten_displ = my_utils.get_flattners(displacements)
from keras.models import Model, load_model
encoder = load_model(os.path.join(model_root, 'keras_models/encoder.hdf5'))
decoder = load_model(os.path.join(model_root, 'keras_models/decoder.hdf5'))
encoded_displacements = encoder.predict(flatten_displ(displacements) @ U)
decoded_displacements = decoder.predict(
encoded_displacements) @ U.transpose()
print('Generating extra samples...')
extra_encoded_displacements = sample_more_encoded_displacements(
encoded_displacements, num_extra_per_poses)
extra_decoded_displacements = decoder.predict(
extra_encoded_displacements) @ U.transpose()
sampled_training_data_path = os.path.join(
model_root, 'augmented_training_data/sampled/')
reencoded_training_data_path = os.path.join(
model_root, 'augmented_training_data/reencoded/')
my_utils.create_dir_if_not_exist(sampled_training_data_path)
my_utils.create_dir_if_not_exist(reencoded_training_data_path)
extra_displacements_path = save_mat_with_prefix(
sampled_training_data_path, 'displacements',
extra_decoded_displacements)
save_mat_with_prefix(sampled_training_data_path, 'enc_displacements',
extra_encoded_displacements)
reencoded_displacements_path = save_mat_with_prefix(
reencoded_training_data_path, 'displacements', decoded_displacements)
save_mat_with_prefix(reencoded_training_data_path, 'enc_displacements',
encoded_displacements)
tet_mesh_path = os.path.join(model_root, 'tets.mesh')
parameters_path = os.path.join(model_root,
'training_data/training/parameters.json')
print('Computing energies for reencoded poses...')
subprocess.call([
'./generate_data_for_pose/build/bin/GenerateDataForPose',
reencoded_displacements_path, tet_mesh_path, parameters_path
])
print('Computing energies for samples...')
subprocess.call([
'./generate_data_for_pose/build/bin/GenerateDataForPose',
extra_displacements_path, tet_mesh_path, parameters_path
])
if key == ord(' '):
viewer.core.is_animating = not viewer.core.is_animating
return True
if key == ord('D') or key == ord('d'):
deformation_field = not deformation_field;
return True
return False
igl.readOBJ("../../tutorial/shared/decimated-max.obj",V,F)
U = igl.eigen.MatrixXd(V)
# S(i) = j: j<0 (vertex i not in handle), j >= 0 (vertex i in handle j)
S = igl.eigen.MatrixXd()
igl.readDMAT("../../tutorial/shared/decimated-max-selection.dmat",S)
S = S.castint()
b = igl.eigen.MatrixXi([[t[0] for t in [(i,S[i]) for i in range(0,V.rows())] if t[1] >= 0]]).transpose()
# Boundary conditions directly on deformed positions
U_bc.resize(b.rows(),V.cols())
V_bc.resize(b.rows(),V.cols())
for bi in range(0,b.rows()):
V_bc.setRow(bi,V.row(b[bi]))
if (S[b[bi]] == 0):
# Don't move handle 0
U_bc.setRow(bi,V.row(b[bi]))
# Add the igl library to the modules search path
import sys, os
sys.path.insert(0, os.getcwd() + "/../")
import pyigl as igl
V = igl.eigen.MatrixXd()
F = igl.eigen.MatrixXi()
# Load a mesh in OFF format
igl.readOFF("../../tutorial/shared/cheburashka.off", V, F)
# Read scalar function values from a file, U: #V by 1
U = igl.eigen.MatrixXd()
igl.readDMAT("../../tutorial/shared/cheburashka-scalar.dmat",U)
U = U.col(0)
# Compute gradient operator: #F*3 by #V
G = igl.eigen.SparseMatrixd()
igl.grad(V,F,G)
# Compute gradient of U
GU = (G*U).MapMatrix(F.rows(),3)
# Compute gradient magnitude
GU_mag = GU.rowwiseNorm()
viewer = igl.viewer.Viewer()
viewer.data.set_mesh(V, F)
# Compute pseudocolor for original function
