def __init__(self):
self.doc = pylatex.Document(args.experiment)
self.doc.packages.append(Package("hyperref", options=["hidelinks"]))
self.doc.packages.append(Package("etoc"))
self.doc.preamble.append(Command("title", "DATA Leakage Report"))
self.doc.preamble.append(Command("author", "Fraunhofer AISEC"))
self.doc.preamble.append(Command("date", pylatex.NoEscape(r"\today")))
self.doc.append(
NoEscape(
"\lstdefinestyle{stylecpp}{\n"
"language=C++,\n" + Report.lstlisting_default_style
)
)
self.doc.append(
NoEscape(
"\lstdefinestyle{styleasm}{\n"
"language=[x86masm]Assembler,\n" + Report.lstlisting_default_style
)
)
self.doc.append(NoEscape(r"\maketitle"))
self.doc.append(NewPage())
self.doc.append(NoEscape(r"\setcounter{tocdepth}{1}"))
self.doc.append(NoEscape(r"\tableofcontents"))
self.doc.append(NoEscape(r"\setcounter{tocdepth}{2}"))
self.doc.append(NewPage())
def create_doc(title, with_tikz=False):
logging.info("Creating PDF...")
doc = pylatex.Document(geometry_options={'margin': '1.5cm'})
doc.packages.append(pylatex.Package('hyperref'))
doc.packages.append(pylatex.Package('amssymb'))
doc.packages.append(pylatex.Package('amsmath'))
doc.packages.append(pylatex.Package('float'))
doc.packages.append(
pylatex.Package('caption', {
'labelformat': 'empty',
'justification': 'centering'
}))
#doc.packages.append(pylatex.Package('todonotes'))
# I don't think these are needed
#doc.packages.append(pylatex.Package('needspace'))
#doc.packages.append(pylatex.Package('pgfplots'))
if with_tikz:
doc.packages.append(pylatex.Package('tikz'))
doc.preamble.append(
pylatex.Command('usetikzlibrary', 'decorations.markings'))
doc.preamble.append(pylatex.Command('usetikzlibrary', 'fit'))
doc.preamble.append(pylatex.Command('usetikzlibrary', 'plotmarks'))
doc.preamble.append(pylatex.Command('title', title))
doc.preamble.append(pylatex.Command('date', ''))
doc.append(pylatex.NoEscape(r"\maketitle"))
doc.append(pylatex.NoEscape(r"\tableofcontents"))
doc.append(pylatex.NoEscape(r"\newpage"))
doc.append(
pylatex.NoEscape(r"\captionsetup[subfigure]{labelformat=empty}"))
return doc
def main():
if not os.path.exists("report"):
os.mkdir("report")
global tumor
global max_distance
global e_method
for t in tumors:
print(t)
doc = pylatex.Document('report/results' + t)
doc.append(pylatex.NewPage())
with doc.create(pylatex.Section(t)):
for m in e_methods:
for d in max_distances:
tumor = t
max_distance = d
e_method = m
with doc.create(
pylatex.Subsection("Score = " + m.tag +
", Max dist. = " + str(d))):
do_analysis(doc)
doc.generate_pdf(clean_tex=False)
def __init__(self, name, number, bank):
self.name = name
self.number = number
self.bank = bank
geometry_options = {
"tmargin": "35mm",
"lmargin": "25mm",
"textwidth": "160mm",
"textheight": "237mm",
}
self.doc = tex.Document(f"AccountReport_{self.name}",
documentclass="article",
document_options=['10pt', "a4paper"],
geometry_options=geometry_options,
lmodern=False)
self.doc.preamble.append(
tex.NoEscape(r"\renewcommand{\familydefault}{\sfdefault}"))
self.doc.preamble.append(tex.Command('usepackage', 'helvet'))
self.doc.preamble.append(
tex.Command('usepackage', arguments='placeins', options="section"))
self.addHeader()
self.doc.preamble.append(tex.Command('title', "Financial Report"))
# self.doc.preamble.append(Command('bank', 'Anonymous author'))
self.doc.preamble.append(tex.Command('date', tex.NoEscape(r'\today')))
def generate_tex_revision_sheet(filepath, result_path, lines, starting_item):
geometry_options = {"tmargin": "2.54cm", "lmargin": "2.54cm"}
doc = pylatex.Document(geometry_options=geometry_options)
with doc.create(pylatex.Section('Revision sheet')):
with doc.create(pylatex.LongTable('|r|p{8cm}|p{8cm}|')) as table:
table.add_hline()
table.add_row(('Nr.', 'Comment', 'How the comment is addressed'))
table.add_hline()
for line in lines:
if not line.strip():
continue
table.add_row(
(starting_item, line.replace('\\newline',
'').replace(' ', ''), ''))
table.add_hline()
starting_item += 1
if result_path:
doc.generate_pdf(result_path, clean_tex=False)
else:
doc.generate_pdf(filepath[:-4] + '_revision_sheet.tex',
clean_tex=False)
return
def create(self):
"""Create the LaTeX document.
:return: ``True`` if the document can have been created, else
``False``.
:rtype: bool
"""
path = self.path_pattern.format(self.cow)
dirname = os.path.dirname(path)
if not os.path.isdir(dirname):
os.makedirs(dirname)
if (os.path.isfile("{}.{}".format(path, self.EXT))
and not stg.FORCE_VIEW):
return False
self.doc = pylatex.Document(path,
title="Cow {} - {}".format(
self.cow, self.title),
maketitle=True)
self.doc.packages.append(
pylatex.Package(
'geometry',
options=['left=1cm', 'right=1cm', 'top=1cm', 'bottom=1cm']))
self.doc.packages.append(pylatex.Package('float'))
self.doc.append(pylatex.command.Command('pagenumbering', 'gobble'))
return True
async def latex(self, ctx, *, tex: str):
msg = await self._generating_embed(ctx)
loop = asyncio.get_event_loop()
doc = pylatex.Document(documentclass=DOCUMENT_CLASS,
document_options=DOCUMENT_OPTIONS,
geometry_options=GEOMETRY_OPTIONS,
lmodern=True,
font_size='LARGE')
doc.preamble.append(
pylatex.utils.NoEscape('\\everymath{\\displaystyle}\n'))
doc.packages.append(pylatex.Package('xcolor'))
tex = pylatex.utils.NoEscape('\\color{white}\n' + tex + '\n')
doc.append(tex)
temp_name = ASSETS_FOLDER + str(uuid.uuid4())
with concurrent.futures.ProcessPoolExecutor() as pool:
args = (temp_name, doc)
try:
await loop.run_in_executor(pool, gen_tex_images, *args)
except subprocess.CalledProcessError:
await msg.delete()
await self._syntax_embed_log(ctx, temp_name)
return
await msg.delete()
attachment = discord.File(fp=f'{temp_name}.png')
msg = await ctx.send(file=attachment)
await self.bot.messenger.publish(Events.on_set_deletable,
msg=msg,
author=ctx.author,
timeout=60)
_cleanup_files(temp_name)
def make_table_file(
name: str,
strings_per_bar: tuple,
title_per_bar=None,
available_columns_per_bar=None,
) -> None:
if not available_columns_per_bar:
available_columns_per_bar = tuple(37 for i in strings_per_bar)
if title_per_bar is None:
title_per_bar = tuple([
"Fret positions for bar {0}".format(idx + 1)
for idx in range(len(strings_per_bar))
])
tables = tuple(
make_string_table(strings, available_columns=available_columns)
for strings, available_columns in zip(strings_per_bar,
available_columns_per_bar))
doc = pylatex.Document(document_options=["landscape", "a4paper"])
doc.preamble.append(pylatex.Command("usepackage", arguments="lscape"))
doc.preamble.append(pylatex.Command("usepackage", arguments="xcolor"))
doc.preamble.append(
pylatex.NoEscape(r"\usepackage[a4paper,bindingoffset=0.2in,%"))
doc.preamble.append(
pylatex.NoEscape(r"left=0.5cm,right=1cm,top=1.5cm,bottom=1cm,%"))
doc.preamble.append(pylatex.NoEscape(r"footskip=.25in]{geometry}"))
doc.preamble.append(pylatex.NoEscape(r"\pagenumbering{gobble}"))
for title, table in zip(title_per_bar, tables):
# doc.append(pylatex.utils.bold(pylatex.LargeText(title)))
doc.append(pylatex.LargeText(pylatex.utils.bold(title)))
doc.append(table)
doc.generate_pdf(name)
doc.generate_tex(name)
def generate_latex(dataset1, dataset2, output):
doc = pl.Document(page_numbers=True,
geometry_options={
"tmargin": "1cm",
"lmargin": "1cm"
})
doc.packages.append(pl.Package('booktabs'))
doc.preamble.append(
pl.Command('title', 'VH/VL Packing for Gradient Boosted Regression'))
doc.preamble.append(pl.Command('author', 'Veronica A. Boron'))
doc.append(pl.NoEscape(r'\maketitle'))
doc.append(
'This document summarizes results for predicting VHVL packing angles using Gradient Boosted Regression via the \
Scikit Learn framework.')
doc.append(pl.NoEscape(r'\maketitle'))
_add_data(doc, dataset1)
doc.append(pl.NoEscape(r'\newpage'))
_add_data(doc, dataset2)
doc.append(pl.NoEscape(r'\newpage'))
print('Generating PDF...')
doc.generate_pdf(output, clean_tex=False)
def sum_sample(self):
"""Summarize the analysis data and plots in a report
"""
for i in range(len(self.infiles)):
self.logger.info('\nCreating pdf for sample {} results.\n'.format(
self.sample[i]))
geometry_options = {
'tmargin': '3cm',
'bmargin': '3cm',
'rmargin': '3cm',
'lmargin': '3cm'
}
doc = px.Document(documentclass='article',
geometry_options=geometry_options)
doc.preamble.append(
px.Command('title',
'Sequencing results for sample ' + self.sample[i]))
doc.preamble.append(px.Command('date', px.NoEscape(r'\today')))
doc.append(px.NoEscape(r'\maketitle'))
with doc.create(px.Section('Genome coverage')):
#include table of results with statistics of coverage
with doc.create(px.Subsection('Coverage results')):
with doc.create(px.Tabular(table_spec='l l')) as table:
with open(self.stats_file, 'r') as stats:
table.add_hline()
stats_data = pd.read_csv(stats, sep='\t')
for num in range(len(stats_data.iloc[0])):
table.add_row([
stats_data.columns[num],
stats_data.iloc[0][num]
])
table.add_hline()
#include coverage plot
with doc.create(px.Figure(position='htb!')) as plot:
plot.add_image(self.cov_plot[i],
width=px.NoEscape(r'\linewidth'))
plot.add_caption(
'Genome coverage for sample ' + self.sample[i] +
'. Calculated using samtools depth with zero-coverage positions included.'
)
#include mismatch plot comparing the sample to the reference
with doc.create(px.Section('Comparison to reference genome')):
with doc.create(px.Figure(position='htb!')) as plot:
plot.add_image(self.basefreq_plot + '_' + self.sample[i] +
'.png',
width=px.NoEscape(r'\linewidth'))
plot.add_caption(
'Mismatch fraction per position for sample ' +
self.sample[i] +
'. Calculated compared to reference {}.'.format(
self.config['folder_locations']['ref_fasta']))
doc.generate_pdf(
filepath=os.path.join(self.outputdir, self.sample_info[i] +
'.Report'))
self.logger.info(
'\nDone creating pdf for sample {} results.\n'.format(
self.sample[i]))
def compile_latex_str(latex: str, filename: str):
"""Compiles the string latex into a PDF, and saves it to filename.
"""
document = pylatex.Document()
document.packages.append(pylatex.Package('amsfonts'))
document.packages.append(pylatex.Package('amsmath'))
document.append(pylatex.NoEscape(r'\thispagestyle{empty}'))
document.append(pylatex.NoEscape(' $' + latex + '$ '))
document.generate_pdf(filename, compiler='pdflatex')
def create_tikz_doc():
logging.info("Creating PDF...")
doc = pylatex.Document(documentclass='standalone',
document_options=['crop', 'tikz'])
doc.packages.append(pylatex.Package('tikz'))
doc.preamble.append(
pylatex.Command('usetikzlibrary', 'decorations.markings'))
doc.preamble.append(pylatex.Command('usetikzlibrary', 'fit'))
doc.preamble.append(pylatex.Command('usetikzlibrary', 'plotmarks'))
return doc
def tex_best(cls,
filenames=None,
texname=None,
scaled_rad=None,
clamp_edge=None):
filenames = filenames if filenames is not None else [
'data/mb_50_2x1.pkl', 'data/mb_50_3x1.pkl'
]
texname = texname if texname is not None else 'data/aggregated_results'
# set up pylatex doc
geometry_options = {"margin": "1in"}
doc = pylatex.Document(texname, geometry_options=geometry_options)
dapne = lambda s: doc.append(pylatex.NoEscape(s))
with doc.create(pylatex.Section('Introduction')):
doc.append(
'Each section that follows shows an optimized layout for a given number of circles and an approximate aspect ratio of the sheet. Throughout, the following parameters are assumed: clamp edge of 10.0mm, circle diameter of 20mm, spacing between circles of 0.50mm.'
)
for fn in filenames:
mb = cls.load(filename=fn)
b = mb.best_box['box']
b.plot(clamp_edge=clamp_edge, scaled_rad=scaled_rad)
# pylatex to put this in tex
#matplotlib.use('Agg')
with doc.create(
pylatex.Section(pylatex.NoEscape(
r'{} circles, box aspect ratio of roughly ${}\times{}$'
.format(b.n_balls, b.box[0], b.box[1])),
label=fn)):
with doc.create(pylatex.Figure(position='htbp')) as plot:
plot.add_plot(width=pylatex.NoEscape(r'0.8\textwidth'))
#plot.add_caption('Optimized circle packing for this sheet size.')
x = b.box_warp(b.logits)
rad = b.ball_radius(x)
clamp_edge = clamp_edge if clamp_edge is not None else 0.0
scaled_rad = scaled_rad if scaled_rad is not None else rad
scaled_box = scaled_rad / rad * (b.box + 2 * rad)
scaled_x = scaled_rad / rad * (x + rad)
#doc.append(pylatex.NoEscape('\noindent Density %:'))
dapne(r'\noindent Density \%: {:04.2f}\% \\'.format(b.density()))
dapne(r'Waste \%: {:04.2f}\% \\'.format(100 - b.density()))
dapne(r'Density with clamp edge \%: {:04.2f}\% \\'.format(
(b.density() * np.prod(scaled_box) /
(scaled_box[1] * (scaled_box[0] + 2 * clamp_edge)))))
dapne(r'Waste with clamp edge \%: {:04.2f}\% \\'.format(
100 - (b.density() * np.prod(scaled_box) /
(scaled_box[1] * (scaled_box[0] + 2 * clamp_edge)))))
dapne(r'Circle center coordinates: \\')
for i in range(b.n_balls):
#dapne(r'$c_{{{}}}$: {}\\'.format(i+1,scaled_x[i,:]))
dapne(r'$[{}~~{}]$ \\'.format(scaled_x[i, 0], scaled_x[i, 1]))
dapne(r'\clearpage')
doc.generate_tex()
def getLatexDocument(self):
'''get the construction budget in LaTeX format.'''
retval = pylatex.Document(documentclass='book')
retval.packages.append(pylatex.Package('minitoc'))
retval.append(pylatex.Command('doparttoc'))
self.writeQuantitiesIntoLatexDocument(retval) #Quantities.
self.writePriceTablesIntoLatexDocument(retval) #Price lists.
self.ImprLtxPreParc(retval) #Presupuestos parciales.
self.ImprLtxResumen(retval) #Resument presup. parciales.
self.ImprLtxPresGen(retval) #Presupuestos generales.
return retval
def _init_doc(self, name, add_date=True):
doc = pyl.Document(name, geometry_options=geometry_options)
doc.packages.append(pyl.Package('hyperref'))
doc.preamble.append(pyl.Command('title', f'Supplementary Figures for {name}'))
if add_date:
doc.preamble.append(pyl.Command('date', pyl.NoEscape(r'\today')))
else:
doc.preamble.append(pyl.Command('date', pyl.NoEscape(r'')))
doc.append(pyl.NoEscape(r'\maketitle'))
doc.append(pyl.NewPage())
return doc
def print_latex(self):
"""
Gerador de arquivos .tex e .pdf
"""
pdf = pylatex.Document("default")
with pdf.create(pylatex.Section("Equações Diofantinas")) as section:
section.append("Equação:")
ultimo = self.numbers[-1]
eq = []
cont = 1
for i in self.numbers:
simbolo = "+"
if i == ultimo:
simbolo = "= 1"
eq.append(
pylatex.NoEscape(" {}x_{} {}".format(i, cont, simbolo)))
cont = cont + 1
section.append(pylatex.Math(data=eq))
text = "n = {}".format(self.order)
section.append(text)
m = pylatex.Matrix(self.take_vec(), mtype='b')
matrix = pylatex.Math(data=['b = ', m])
section.append(matrix)
m = pylatex.Matrix(self.take_matrix(), mtype='b')
matrix = pylatex.Math(data=['A = ', m])
section.append(matrix)
section.append("Resposta = {}".format(self.cofactor_matrix()))
section.append(pylatex.LineBreak())
section.append("Confirmando:")
section.append(pylatex.LineBreak())
s = 0
for i in range(len(self.numbers)):
r = self.numbers[i] * self.cofactor_matrix()[i]
s = s + r
resp = "\t {}\t{} \t* \t{} \t= \t{} \t({})\n".format(
i, self.numbers[i],
self.cofactor_matrix()[i], r, s)
section.append(resp)
if self.create_pdf:
pdf.generate_pdf()
pdf.generate_tex()
def gen_doc(file_output):
'''
function to return a latex document with a table for Brazilian bonds
input:
-----
- file_output: str
returnt:
str - latex output.
'''
doc = pl.Document('./latex/{}'.format(file_output), font_size='normalsize',
documentclass='standalone',
document_options=['article', 'crop=false'])
return doc
def main():
doc = pylatex.Document("basic")
for saga in Saga.objects.order_by("name"):
with doc.create(pylatex.Section(saga.name)):
with doc.create(pylatex.Enumerate()) as elements:
for book in saga.books:
color = "red"
if book.owned:
color = "blue"
txt = pylatex.TextColor(color, book.title)
elements.add_item(txt)
doc.generate_pdf("saga_completion", clean_tex=True)
def make_introduction(make_graphics: bool = False):
import os
from aml import globals_
from mutools import mus
if make_graphics:
_make_graphics()
images = {}
for iname in os.listdir(globals_.INTRODUCTION_PICTURES_PATH):
splitted_iname = iname.split(".")
if splitted_iname[1] == "png":
ipath = r"{}/{}".format(globals_.INTRODUCTION_PICTURES_PATH, iname)
images.update({splitted_iname[0]: os.path.realpath(ipath)})
language_options = {"en": "english", "de": "ngerman"}
# (2) writing document
for paper_format in (mus.A4, mus.A3):
for language in ("de", "en"):
texts_path = "aml/introduction/texts/{}".format(language)
texts = {}
for fname in os.listdir(texts_path):
subtexts = {}
for subtext in os.listdir("{}/{}".format(texts_path, fname)):
with open("{}/{}/{}".format(texts_path, fname, subtext),
"r") as f:
subtexts.update({subtext: f.read()})
texts.update({fname: subtexts})
path = "{}/introduction_{}_{}".format(globals_.INTRODUCTION_PATH,
paper_format.name, language)
document = pylatex.Document(default_filepath=path)
_prepare_document(document, language_options, language,
paper_format)
document.append(
pylatex.Section(title=texts["title"]["title"],
label=False,
numbering=False))
_add_setup_notes(document, texts, images)
_add_string_notes(document, texts, images)
_add_keyboard_notes(document, texts, images)
print("gen doc {}".format(path))
document.generate_pdf()
def latex(self, fpath: Path, tex: bool = False):
if self.params["seed"] is not None:
random.seed(self.params["seed"])
self.PALLETE = self._PALLETE.copy()
random.shuffle(self.PALLETE)
doc = pylatex.Document(documentclass="standalone",
document_options=["tikz"])
doc.packages.append(
pylatex.Package("firasans", options=["light", "sfdefault"]))
with doc.create(pylatex.TikZ()) as pic:
self._grid(pic)
doc.generate_pdf(fpath, clean_tex=not tex)
def __init__(self, **kwargs):
self.tables = []
geometry = {
"landscape": True,
"margin": "0.5in",
"headheight": "20pt",
"headsep": "10pt",
"includeheadfoot": True
}
geometry.update(kwargs)
self.doc = pylatex.Document(page_numbers=True,
geometry_options=geometry)
self.doc.packages.append(pylatex.Package("xcolor", options='table'))
self.fpath = None
self.len_last_page = 0
def _init_doc(self, add_date=True):
doc = pyl.Document(geometry_options=geometry_options)
doc.packages.append(pyl.Package("float"))
doc.packages.append(pyl.Package("hyperref"))
doc.preamble.append(pyl.Command("title", self.title))
if add_date:
doc.preamble.append(pyl.Command("date", pyl.NoEscape(r"\today")))
else:
doc.preamble.append(pyl.Command("date", pyl.NoEscape(r"")))
doc.append(pyl.NoEscape(r"\maketitle"))
doc.append(pyl.NewPage())
doc.append(pyl.Command("tableofcontents"))
doc.append(pyl.NewPage())
return doc
def __init__(self, **kwargs):
"""Generates a PDF report.
:param author: The author of the paper.
:type author: str
:param title: The title of the paper.
:type title: str
:param toc: Display table of contents if True.
:type toc: bool
:param root: The root directory.
:type root: str
:param glossary_file: A file containing def/thm/cor/prop/lemma.
:type glossary_file: str
:param outline_file: A file containing the section outline.
:type outline_file: str
:param bib_file: A file containing a bibliography.
:type bib_file: str
:param refs: A dictionary of labels and their associated environments.
:type refs: {str: str,...}
:param packages: Required LaTeX packages.
:type packages: [str,...]
"""
self.args = kwargs
self.doc = pl.Document(geometry_options={'margin': '1in'})
options = ['12pt']
if self.args.get('twocolumn') is True:
options.append('twocolumn')
self.doc.documentclass = pl.Command(
'documentclass',
options=options,
arguments=['article'],
)
self.args['headers'] = [
'lhead', 'chead', 'rhead', 'lfoot', 'cfoot', 'rfoot'
]
self.args['heads'] = {}
for pos in self.args['headers']:
self.args['heads'][pos] = self.args.get(pos)
if 'bib_file' in self.args:
self.args['packages'].append('biblatex')
self.sections = {}
self.glossary = {}
self.outline = []
self.kinds = {}
def _export_pdf(self, fname: str):
geometry_options = {"margin": "1in"}
doc = pylatex.Document(geometry_options=geometry_options)
header = pylatex.PageStyle("header")
with doc.create(pylatex.MiniPage(align="c")):
doc.append(
pylatex.HugeText(pylatex.utils.bold("Practice Sessions")))
doc.append(pylatex.LineBreak())
with header.create(pylatex.Foot("L")):
header.append("@2019 Musicavis")
with header.create(pylatex.Foot("R")):
header.append(pylatex.simple_page_number())
doc.preamble.append(header)
doc.change_document_style("header")
for practice in self.practices:
with doc.create(
pylatex.Section(
f"{practice.instrument.name.title()} ({practice.date:%a, %B %m %Y})"
)):
self._add_list_itemize_latex(doc, "Goals",
practice.goals.all())
with doc.create(pylatex.Subsection("Exercises")):
with doc.create(pylatex.Itemize()) as itemize:
for x in practice.exercises.all():
itemize.add_item(
f"{x.name} at {x.bpm_start}-{x.bpm_end}bpm for {x.minutes}m"
)
self._add_list_itemize_latex(doc, "Improvements",
practice.improvements.all())
self._add_list_itemize_latex(doc, "Positives",
practice.positives.all())
with doc.create(pylatex.Subsection("Notes:")):
if practice.notes:
for note in practice.notes.split("\r\n"):
doc.append(note) if note else doc.append(
pylatex.NewLine())
doc.generate_pdf(fname.split(".pdf")[0], clean=True)
def compile_latex_str(latex: str, filename: str, display: bool = False):
"""Compiles the string latex into a PDF, and saves it to filename.
"""
document = pylatex.Document()
document.packages.append(pylatex.Package('amsmath'))
document.packages.append(pylatex.Package('amssymb'))
document.packages.append(pylatex.Package('amsfonts'))
document.preamble.append(pylatex.Command('thispagestyle', 'empty'))
# People seem to think \Z, \R and \Q exist, even though they don't. Just add them in to avoid problems.
document.preamble.append(pylatex.NoEscape(r'\newcommand{\Z}{\mathbb{Z}}'))
document.preamble.append(pylatex.NoEscape(r'\newcommand{\R}{\mathbb{R}}'))
document.preamble.append(pylatex.NoEscape(r'\newcommand{\Q}{\mathbb{Q}}'))
with document.create(Preview()):
document.append(
pylatex.NoEscape((r'\[' if display else r'\(') + latex +
(r'\]' if display else r'\)')))
document.generate_pdf(filename, compiler='pdflatex')
print(f"{filename}\t{latex}", flush=True)
def df_to_pdf(df,
out_file,
print_index=True,
debug=False,
digit_round=1,
caption=None,
comma_separated_columns=[],
gen_latex='False'):
"""
convert data frame to pdf/latex. used to create tables for paper/thesis.
"""
if digit_round is not None:
df = df.round(digit_round)
for column in comma_separated_columns:
df[column] = df[column].map('{:,}'.format)
table_columns = len(df.columns) + 1 if print_index else len(df.columns)
if gen_latex:
with open(table_path + out_file + '.tex', 'w') as f:
f.write(
df.to_latex(escape=False,
index=print_index,
column_format='c' * table_columns))
return
doc = pl.Document(documentclass='standalone', document_options='varwidth')
doc.packages.append(pl.Package('booktabs'))
with doc.create(pl.MiniPage()):
with doc.create(pl.Table(position='htbp')) as table:
table.append(pl.Command('centering'))
table.append(
pl.NoEscape(
df.to_latex(escape=False,
index=print_index,
column_format='c' * table_columns)))
if caption is not None:
table.add_caption(caption)
if debug:
return doc.dumps()
doc.generate_pdf(output_path + out_file)
def __init__(self, path):
# Declare data bank as empty dict
self.mBank = {}
# Set geometry options
geometry_options = \
{
"landscape": True,
"heightrounded": True,
"a4paper": True,
"headheight": "10mm",
"tmargin": "15mm",
"bottom": "10mm",
"right": "15mm",
"left": "15mm"
}
# Create document
self.mDoc = pyl.Document(geometry_options=geometry_options,
default_filepath=path + "/report")
# Declare packages
# self.mDoc.packages.append(pyl.Package("lscape", options="pdftex"))
self.mDoc.packages.append(pyl.Package("float"))
self.mDoc.add_color("LightGray", "rgb", "0.83, 0.83, 0.83")
self.mDoc.add_color("DarkGray", "rgb", "0.66, 0.66, 0.66")
# Create header
header = pyl.PageStyle("header")
# Create left header
with header.create(pyl.Head("L")) as leftHeader:
with leftHeader.create(
pyl.MiniPage(width=pyl.NoEscape(r"0.7\textwidth"),
pos="c")) as logoWrapper:
logoWrapper.append(
pyl.StandAloneGraphic(image_options="width=120px",
filename="../Images/logo.png"))
# Create right header
with header.create(pyl.Head("R")):
header.append("Electronics Workshop")
# Append header to document
self.mDoc.preamble.append(header)
self.mDoc.change_document_style("header")
return
def profile_likelihood(self, pl_directory, size=0.3, num_per_row=3):
"""
compile any pdf, jpg and png files
in directory into a latex pdf document
:return:
"""
if isinstance(self.file_types, str):
self.file_types = [self.file_types]
files = self.search_recursive(pl_directory)
if files is []:
raise errors.InputError(
'''Cannot locate pdf, jpg or png files in "{}". Please
give the full path to where your model selection results are
plotted.
'''.format(pl_directory))
doc = pylatex.Document(self.filename, documentclass='article')
for k, v in list(files.items()):
assert isinstance(v, list)
if v is not None:
with doc.create(
pylatex.Figure(
position='htbp!',
width=pylatex.NoEscape(r'\linewidth'))) as fig:
# [fig.add_image(i) for i in v]
for i in range(len(v)):
with doc.create(
pylatex.SubFigure(width=pylatex.NoEscape(
str(size) + r'\linewidth'))) as sub:
sub.add_image(v[i])
sub.add_caption(os.path.split(v[i])[1])
if i is not 0 and i % num_per_row is 0:
doc.append(pylatex.NoEscape(r'\break'))
# sub.add_label(i)
# # fig.add_caption(os.path.join(*Path(v[i]).parts[-3:-1]))
doc.append(pylatex.NoEscape(r'\hfill'))
fig.add_caption(os.path.split(k)[1])
doc.generate_pdf()
LOG.info('PDF generated at "{}"'.format(doc.default_filepath))
def __init__(self,
root='./latex',
name='default',
paper='a4paper',
fontsize='12pt',
history=None,
best1d=None,
constkernel=None):
self.name = name
self.history = history
self.best1d = best1d
self.constker = constkernel
self.summands = history[-1].toSummands()
self.kers, self.cums = cumulateAdditiveKernels(self.summands)
# Prepare directory
now = datetime.now().strftime('%Y%m%d%H%M%S')
p = os.path.join(root, now + '_' + name)
try:
if os.path.exists(p): shutil.rmtree(p)
os.makedirs(p)
except Exception as e:
print e
self.path = p
# Figure numbering
self.fignum = 1
# Make document
self.doc = pl.Document(
documentclass=pl.Command('documentclass',
options=[fontsize, paper, 'twoside'],
arguments='article'))
self.makePreamble()
self.makeIntro()
self.makeSummary()
self.describeVariables()
self.describeAdditiveComponents()
def getPriceJustification(self):
retval = pylatex.Document(documentclass='article')
super(Obra, self).writePriceJustification(retval, 'root')
retval.append(pylatex.Command('input{firmas}'))
return retval
