def check(self):
# Analyze the stderr and stdout files of the resource manager system.
qerr_info = None
qout_info = None
if os.path.exists(self.qerr_filepath):
with open(self.qerr_filepath, "r") as f:
qerr_info = f.read()
if os.path.exists(self.qout_filepath):
with open(self.qout_filepath, "r") as f:
qout_info = f.read()
self.timelimit_error = None
self.queue_errors = None
if qerr_info or qout_info:
from pymatgen.io.abinit.scheduler_error_parsers import get_parser
qtype = self.queue_adapter.QTYPE
scheduler_parser = get_parser(qtype, err_file=self.qerr_filepath,
out_file=self.qout_filepath)
if scheduler_parser is None:
raise ValueError('Cannot find scheduler_parser for qtype {}'.format(qtype))
scheduler_parser.parse()
self.queue_errors = scheduler_parser.errors
for error in self.queue_errors:
if isinstance(error, TimeCancelError):
logger.debug('found timelimit error.')
self.timelimit_error = error
return True
return False
def test_get_parser(self):
"""
Testing the get parser API
"""
for (scheduler) in ALL_PARSERS:
err_file = 'dummy'
parser = get_parser(scheduler, err_file=err_file)
self.assertIsInstance(parser.files, dict)
self.assertIsInstance(parser.errors, list)
self.assertIsInstance(parser.error_definitions, dict)
self.assertEqual(parser.parse(), len(parser.error_definitions))
def test_get_parser(self):
"""
Testing the get parser API
"""
for (scheduler) in ALL_PARSERS:
err_file = 'dummy'
parser = get_parser(scheduler, err_file=err_file)
self.assertIsInstance(parser.files, dict)
self.assertIsInstance(parser.errors, list)
self.assertIsInstance(parser.error_definitions, dict)
self.assertEqual(parser.parse(), len(parser.error_definitions))
def check(self):
"""
Check for the defined errors, put all found errors in self.errors, return True if any were found False if no
errors were found
"""
parser = get_parser(self.scheduler_adapter.name, err_file=self.err_file, out_file=self.out_file,
run_err_file=self.run_err_file, batch_err_file=self.batch_err_file)
parser.parse()
self.errors = parser.errors
if len(self.errors) == 0:
return False
else:
return True
def check(self):
# Analyze the stderr and stdout files of the resource manager system.
qerr_info = None
qout_info = None
if os.path.exists(self.qerr_filepath):
with open(self.qerr_filepath, "r") as f:
qerr_info = f.read()
if os.path.exists(self.qout_filepath):
with open(self.qout_filepath, "r") as f:
qout_info = f.read()
self.memory_error = None
self.queue_errors = None
if qerr_info or qout_info:
from pymatgen.io.abinit.scheduler_error_parsers import get_parser
qtype = self.queue_adapter.QTYPE
scheduler_parser = get_parser(qtype,
err_file=self.qerr_filepath,
out_file=self.qout_filepath)
if scheduler_parser is None:
raise ValueError(
'Cannot find scheduler_parser for qtype {}'.format(qtype))
scheduler_parser.parse()
self.queue_errors = scheduler_parser.errors
#TODO: handle the cases where it is Master or Slave here ... ?
for error in self.queue_errors:
if isinstance(error, MemoryCancelError):
logger.debug('found memory error.')
self.memory_error = error
return True
if isinstance(error, MasterProcessMemoryCancelError):
logger.debug('found master memory error.')
self.memory_error = error
return True
if isinstance(error, SlaveProcessMemoryCancelError):
logger.debug('found slave memory error.')
self.memory_error = error
return True
return False
def check(self):
# Analyze the stderr and stdout files of the resource manager system.
qerr_info = None
qout_info = None
if os.path.exists(self.qerr_filepath):
with open(self.qerr_filepath, "r") as f:
qerr_info = f.read()
if os.path.exists(self.qout_filepath):
with open(self.qout_filepath, "r") as f:
qout_info = f.read()
self.memory_error = None
self.queue_errors = None
if qerr_info or qout_info:
from pymatgen.io.abinit.scheduler_error_parsers import get_parser
qtype = self.queue_adapter.QTYPE
scheduler_parser = get_parser(qtype, err_file=self.qerr_filepath,
out_file=self.qout_filepath)
if scheduler_parser is None:
raise ValueError('Cannot find scheduler_parser for qtype {}'.format(qtype))
scheduler_parser.parse()
self.queue_errors = scheduler_parser.errors
#TODO: handle the cases where it is Master or Slave here ... ?
for error in self.queue_errors:
if isinstance(error, MemoryCancelError):
logger.debug('found memory error.')
self.memory_error = error
return True
if isinstance(error, MasterProcessMemoryCancelError):
logger.debug('found master memory error.')
self.memory_error = error
return True
if isinstance(error, SlaveProcessMemoryCancelError):
logger.debug('found slave memory error.')
self.memory_error = error
return True
return False