def test_read(self):
"""
Tests for method `read`.
"""
for title in testUtilities.getSimulationTitles():
logging.info(title)
specimen = Specimen.Specimen()
filepath = os.path.abspath(os.path.join(self.testDataPath, "%s/%s.sam" % (title, title)))
specimen.read(filepath)
self.assertEquals(Version.VERSION_1_1_1.major, specimen.version.major)
self.assertEquals(Version.VERSION_1_1_1.minor, specimen.version.minor)
self.assertEquals(Version.VERSION_1_1_1.revision, specimen.version.revision)
self.assertEquals(Version.VERSION_1_1_1, specimen.version)
specimenRef = self.getSpecimenReference(title)
self.assertEquals(specimenRef.version.major, specimen.version.major)
self.assertEquals(specimenRef.version.minor, specimen.version.minor, title)
self.assertEquals(specimenRef.version.revision, specimen.version.revision)
self.assertEquals(specimenRef.version, specimen.version)
self.assertEquals(specimenRef.numberRegions, specimen.numberRegions)
def test_write(self):
"""
Tests for method `write`.
"""
raise SkipTest
self.maxDiff = None
for title in testUtilities.getSimulationTitles():
resultsParametersRef = self.getSimulationParametersReference(title)
filepathReference = os.path.abspath(os.path.join(self.testDataPath, "%s/%s.rp" % (title, title)))
filepath = os.path.join(self.tempDataPath, "%s.rp" % (title))
resultsParameters = ResultsParameters.ResultsParameters()
resultsParameters = resultsParametersRef
resultsParameters.write(filepath)
self.assertEquals(resultsParametersRef.isComputeXrayCharacteristic, resultsParameters.isComputeXrayCharacteristic)
self.assertEquals(resultsParametersRef.isComputeXrayBremsstrahlung, resultsParameters.isComputeXrayBremsstrahlung)
self.assertEquals(resultsParametersRef.isComputeXrayPhirhoz, resultsParameters.isComputeXrayPhirhoz)
linesRef = open(filepathReference, 'r').readlines()
lines = open(filepath, 'r').readlines()
self.assertListEqual(linesRef, lines)
self.fail("Test if the testcase is working.")
def test_write(self):
"""
Tests for method `write`.
"""
raise SkipTest
self.maxDiff = None
for title in testUtilities.getSimulationTitles():
logging.info(title)
specimenRef = self.getSpecimenReference(title)
filepathReference = os.path.abspath(os.path.join(self.testDataPath, "%s/%s.sam" % (title, title)))
filepath = os.path.join(self.tempDataPath, "%s.sam" % (title))
specimen = Specimen.Specimen()
specimen = specimenRef
specimen.write(filepath)
linesRef = open(filepathReference, 'r').readlines()
lines = open(filepath, 'r').readlines()
for index in range(len(linesRef)):
lineRef = linesRef[index]
line = lines[index]
message = "%i:\n%s\n%s" % (index, lineRef, line)
self.assertEquals(lineRef, line, message)
self.assertListEqual(linesRef, lines)
def test_read(self):
"""
Tests for method `read`.
"""
models = Models.Models()
for title in testUtilities.getSimulationTitles():
filepath = os.path.abspath(
os.path.join(self.testDataPath, "%s/%s.mdl" % (title, title)))
models.read(filepath)
modelList = models.getModelList()
self.assertEquals(self.numberModels, len(modelList))
self.assertEquals(
MCXRayModel.AtomMeanIonizationPotentialModel.TYPE_JOY_LUO,
modelList[Models.
KEY_ATOM_MEAN_IONIZATION_POTENTIAL_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomEnergyLossModel.TYPE_BETHE,
modelList[Models.KEY_ATOM_ENERGY_LOSS_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomScreeningModel.TYPE_HENOC_MAURICE,
modelList[Models.KEY_ATOM_SCREENING_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomCrossSectionModel.TYPE_BROWNING,
modelList[Models.KEY_ATOM_CROSS_SECTION_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomCrossSectionScreeningModel.TYPE_HENOC_MAURICE,
modelList[
Models.KEY_ATOM_CROSS_SECTION_SCREENING_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomCollisionModel.TYPE_BROWNING,
modelList[Models.KEY_ATOM_COLLISION_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomCollisionScreeningModel.TYPE_HENOC_MAURICE,
modelList[
Models.KEY_ATOM_COLLISION_SCREENING_MODEL].getModel())
self.assertEquals(
MCXRayModel.AtomElectronRangeModel.TYPE_KANAYA_OKAYAMA,
modelList[Models.KEY_ATOM_ELECTRON_RANGE_MODEL].getModel())
self.assertEquals(
MCXRayModel.XRayCSCharacteristicModel.TYPE_CASTANI1982,
modelList[Models.KEY_XRAY_CS_CHARACTERISTIC_MODEL].getModel())
self.assertEquals(
MCXRayModel.XRayCSBremsstrahlungModel.TYPE_DING,
modelList[Models.KEY_XRAY_CS_BREMSSTRAHLUNG_MODEL].getModel())
self.assertEquals(
MCXRayModel.SampleEnergyLossModel.TYPE_BETHE_JOY_LUO,
modelList[Models.KEY_SAMPLE_ENERGY_LOSS_MODEL].getModel())
self.assertEquals(
MCXRayModel.RegionEnergyLossModel.TYPE_BETHE_JOY_LUO,
modelList[Models.KEY_REGION_ENERGY_LOSS_MODEL].getModel())
self.assertEquals(
MCXRayModel.MassAbsorptionCoefficientModel.TYPE_CHANTLER2005,
modelList[
Models.KEY_MASS_ABSORPTION_COEFFICIENT_MODEL].getModel())
def test__extractTitleFromFilepath(self):
"""
Tests for method `_extractTitleFromFilepath`.
"""
simulationInputs = SimulationInputs.SimulationInputs()
for titleRef in testUtilities.getSimulationTitles():
filepath = os.path.abspath(
os.path.join(self.testDataPath,
"%s/%s.sim" % (titleRef, titleRef)))
title = simulationInputs._extractTitleFromFilepath(filepath)
self.assertEquals(titleRef, title)
def test_write(self):
"""
Tests for method `write`.
"""
raise SkipTest
self.maxDiff = None
for title in testUtilities.getSimulationTitles():
simulationParametersRef = self.getSimulationParametersReference(
title)
filepathReference = os.path.abspath(
os.path.join(self.testDataPath, "%s/%s.par" % (title, title)))
filepath = os.path.join(self.tempDataPath, "%s.par" % (title))
simulationParameters = SimulationParameters.SimulationParameters()
simulationParameters = simulationParametersRef
simulationParameters.write(filepath)
self.assertEquals(simulationParametersRef.baseFilename,
simulationParameters.baseFilename)
self.assertEquals(simulationParametersRef.numberElectrons,
simulationParameters.numberElectrons)
self.assertEquals(simulationParametersRef.numberPhotons,
simulationParameters.numberPhotons)
self.assertEquals(simulationParametersRef.numberWindows,
simulationParameters.numberWindows)
self.assertEquals(simulationParametersRef.numberFilmsX,
simulationParameters.numberFilmsX)
self.assertEquals(simulationParametersRef.numberFilmsY,
simulationParameters.numberFilmsY)
self.assertEquals(simulationParametersRef.numberFilmsZ,
simulationParameters.numberFilmsZ)
self.assertEquals(simulationParametersRef.numberChannels,
simulationParameters.numberChannels)
self.assertEquals(simulationParametersRef.energyChannelWidth_eV,
simulationParameters.energyChannelWidth_eV)
self.assertEquals(
simulationParametersRef.spectrumInterpolationModel,
simulationParameters.spectrumInterpolationModel)
self.assertEquals(simulationParametersRef.voxelSimplification,
simulationParameters.voxelSimplification, title)
linesRef = open(filepathReference, 'r').readlines()
lines = open(filepath, 'r').readlines()
self.assertListEqual(linesRef, lines)
def test_read(self):
"""
Tests for method `read`.
"""
raise SkipTest
for title in testUtilities.getSimulationTitles():
resultsParameters = ResultsParameters.ResultsParameters()
filepath = os.path.abspath(os.path.join(self.testDataPath, "%s/%s.rp" % (title, title)))
resultsParameters.read(filepath)
resultsParametersRef = self.getSimulationParametersReference(title)
self.assertEquals(resultsParametersRef.isComputeXrayCharacteristic, resultsParameters.isComputeXrayCharacteristic)
self.assertEquals(resultsParametersRef.isComputeXrayBremsstrahlung, resultsParameters.isComputeXrayBremsstrahlung)
self.assertEquals(resultsParametersRef.isComputeXrayPhirhoz, resultsParameters.isComputeXrayPhirhoz)
self.fail("Test if the testcase is working.")
def test_read(self):
"""
Tests for method `read`.
"""
simulationInputs = SimulationInputs.SimulationInputs()
for title in testUtilities.getSimulationTitles():
filepath = os.path.abspath(
os.path.join(self.testDataPath, "%s/%s.sim" % (title, title)))
simulationInputs.read(filepath)
self.assertEquals(title, simulationInputs.title)
self.assertEquals("%s.sam" % (title),
simulationInputs.specimenFilename)
self.assertEquals("%s.mdl" % (title),
simulationInputs.modelFilename)
self.assertEquals("%s.mic" % (title),
simulationInputs.microsopeFilename)
self.assertEquals("%s.par" % (title),
simulationInputs.simulationParametersFilename)
def test_read(self):
"""
Tests for method `read`.
"""
for title in testUtilities.getSimulationTitles():
simulationParameters = SimulationParameters.SimulationParameters()
filepath = os.path.abspath(
os.path.join(self.testDataPath, "%s/%s.par" % (title, title)))
simulationParameters.read(filepath)
simulationParametersRef = self.getSimulationParametersReference(
title)
self.assertEquals(simulationParametersRef.baseFilename,
simulationParameters.baseFilename)
self.assertEquals(simulationParametersRef.numberElectrons,
simulationParameters.numberElectrons)
self.assertEquals(simulationParametersRef.numberPhotons,
simulationParameters.numberPhotons)
self.assertEquals(simulationParametersRef.numberWindows,
simulationParameters.numberWindows)
self.assertEquals(simulationParametersRef.numberFilmsX,
simulationParameters.numberFilmsX)
self.assertEquals(simulationParametersRef.numberFilmsY,
simulationParameters.numberFilmsY)
self.assertEquals(simulationParametersRef.numberFilmsZ,
simulationParameters.numberFilmsZ)
self.assertEquals(simulationParametersRef.numberChannels,
simulationParameters.numberChannels)
self.assertEquals(simulationParametersRef.energyChannelWidth_eV,
simulationParameters.energyChannelWidth_eV)
self.assertEquals(
simulationParametersRef.spectrumInterpolationModel,
simulationParameters.spectrumInterpolationModel)
self.assertEquals(simulationParametersRef.voxelSimplification,
simulationParameters.voxelSimplification, title)
def test_write(self):
"""
Tests for method `write`.
"""
raise SkipTest
self.maxDiff = None
for title in testUtilities.getSimulationTitles():
filepathReference = os.path.abspath(
os.path.join(self.testDataPath, "%s/%s.mdl" % (title, title)))
filepath = os.path.join(self.tempDataPath, "%s.mdl" % (title))
models = Models.Models()
models._modelList[
Models.KEY_XRAY_CS_BREMSSTRAHLUNG_MODEL].setModel(
MCXRayModel.XRayCSBremsstrahlungModel.TYPE_DING)
models.write(filepath)
linesRef = open(filepathReference, 'r').readlines()
lines = open(filepath, 'r').readlines()
self.assertListEqual(linesRef, lines)