def cleanup(wires):
# Remove duplicated edges.
ordered_edges = np.sort(wires.edges, axis=1)
__, unique_edge_ids, __ = pymesh.unique_rows(ordered_edges)
edges = wires.edges[unique_edge_ids, :]
wires.load(wires.vertices, edges)
# Remove topologically degenerate edges.
is_not_topologically_degenerate = edges[:, 0] != edges[:, 1]
if not np.all(is_not_topologically_degenerate):
wires.filter_edges(is_not_topologically_degenerate)
return wires
def cleanup(wires, logger):
if wires.num_vertices == 0:
return wires
start_time = time()
tol = 1e-6
vertices, edges, __ = pymesh.remove_duplicated_vertices_raw(
wires.vertices, wires.edges, tol)
# Remove duplicated edges.
ordered_edges = np.sort(edges, axis=1)
__, unique_edge_ids, __ = pymesh.unique_rows(ordered_edges)
edges = edges[unique_edge_ids, :]
wires.load(vertices, edges)
# Remove topologically degenerate edges.
is_not_topologically_degenerate = edges[:, 0] != edges[:, 1]
if not np.all(is_not_topologically_degenerate):
wires.filter_edges(is_not_topologically_degenerate)
finish_time = time()
t = finish_time - start_time
logger.info("Cleanup running time: {}".format(t))
return wires
def cleanup(wires, logger):
if wires.num_vertices == 0:
return wires;
start_time = time();
tol = 1e-6;
vertices, edges, __ = pymesh.remove_duplicated_vertices_raw(
wires.vertices, wires.edges, tol);
# Remove duplicated edges.
ordered_edges = np.sort(edges, axis=1);
__, unique_edge_ids, __ = pymesh.unique_rows(ordered_edges);
edges = edges[unique_edge_ids, :];
wires.load(vertices, edges);
# Remove topologically degenerate edges.
is_not_topologically_degenerate = edges[:,0] != edges[:,1];
if not np.all(is_not_topologically_degenerate):
wires.filter_edges(is_not_topologically_degenerate);
finish_time = time();
t = finish_time - start_time;
logger.info("Cleanup running time: {}".format(t));
return wires;
def print_extended_info(mesh, info):
print_section_header("Extended info")
num_cc = mesh.num_components
num_f_cc = mesh.num_surface_components
if mesh.num_voxels > 0:
num_v_cc = mesh.num_volume_components
else:
num_v_cc = 0
isolated_vertices = mesh.num_isolated_vertices
duplicated_faces = mesh.num_duplicated_faces
unique_vertices = pymesh.unique_rows(mesh.vertices)[0]
duplicated_vertices = mesh.num_vertices - len(unique_vertices)
degenerated_indices = pymesh.get_degenerated_faces(mesh)
num_degenerated = len(degenerated_indices)
if num_degenerated > 0:
degenerated_faces = mesh.faces[degenerated_indices]
combinatorially_degenerated_faces = \
[f for f in degenerated_faces if len(set(f)) != len(f) ]
num_combinatorial_degenerated_faces =\
len(combinatorially_degenerated_faces)
else:
num_combinatorial_degenerated_faces = 0
print_property("num connected components", num_cc)
print_property("num connected surface components", num_f_cc)
print_property("num connected volume components", num_v_cc)
print_property("num isolated vertices", isolated_vertices, 0)
print_property("num duplicated vertices", duplicated_vertices, 0)
print_property("num duplicated faces", duplicated_faces, 0)
print_property("num boundary edges", mesh.num_boundary_edges)
print_property("num boundary loops", mesh.num_boundary_loops)
print_property("num degenerated faces", num_degenerated, 0)
if num_degenerated > 0:
print_property(" combinatorially degenerated",
num_combinatorial_degenerated_faces, 0)
print_property(" geometrically degenerated",
num_degenerated - num_combinatorial_degenerated_faces,
0)
info["num_connected_components"] = num_cc
info["num_connected_surface_components"] = num_f_cc
info["num_connected_volume_components"] = num_v_cc
info["num_isolated_vertices"] = isolated_vertices
info["num_duplicated_vertices"] = duplicated_vertices
info["num_duplicated_faces"] = duplicated_faces
info["num_boundary_edges"] = mesh.num_boundary_edges
info["num_boundary_loops"] = mesh.num_boundary_loops
info["num_degenerated_faces"] = num_degenerated
info["num_combinatorial_degenerated_faces"] =\
num_combinatorial_degenerated_faces
info["num_geometrical_degenerated_faces"] =\
num_degenerated - num_combinatorial_degenerated_faces
if mesh.dim == 2 and mesh.vertex_per_face == 3:
tri_orientations = pymesh.get_triangle_orientations(mesh)
num_inverted_tris = np.sum(tri_orientations < 0)
print_property("num inverted triangles:", num_inverted_tris, 0)
info["num_inverted_triangles"] = int(num_inverted_tris)
if mesh.num_voxels > 0 and mesh.vertex_per_voxel == 4:
tet_orientations = pymesh.get_tet_orientations(mesh)
num_degenerate_tets = np.sum(tet_orientations == 0)
num_inverted_tets = np.sum(tet_orientations < 0)
print_property("num degenerated tets:", num_degenerate_tets, 0)
print_property("num inverted tets:", num_inverted_tets, 0)
info["num_degenerated_tets"] = int(num_degenerate_tets)
info["num_inverted_tets"] = int(num_inverted_tets)
is_closed = mesh.is_closed()
is_edge_manifold = mesh.is_edge_manifold()
is_vertex_manifold = mesh.is_vertex_manifold()
is_oriented = mesh.is_oriented()
euler = mesh.euler_characteristic
print_property("oriented", is_oriented, True)
print_property("closed", is_closed, True)
print_property("edge manifold", is_edge_manifold, True)
print_property("vertex manifold", is_vertex_manifold, True)
print_property("euler characteristic", euler)
info["oriented"] = is_oriented
info["closed"] = is_closed
info["vertex_manifold"] = is_vertex_manifold
info["edge_manifold"] = is_edge_manifold
info["euler_characteristic"] = euler
def print_extended_info(mesh, info):
print_section_header("Extended info");
num_cc = mesh.num_components;
num_f_cc = mesh.num_surface_components;
if mesh.num_voxels > 0:
num_v_cc = mesh.num_volume_components;
else:
num_v_cc = 0;
isolated_vertices = mesh.num_isolated_vertices;
duplicated_faces = mesh.num_duplicated_faces;
unique_vertices = pymesh.unique_rows(mesh.vertices)[0];
duplicated_vertices = mesh.num_vertices - len(unique_vertices);
degenerated_indices = pymesh.get_degenerated_faces(mesh);
num_degenerated = len(degenerated_indices);
if num_degenerated > 0:
degenerated_faces = mesh.faces[degenerated_indices];
combinatorially_degenerated_faces = \
[f for f in degenerated_faces if len(set(f)) != len(f) ];
num_combinatorial_degenerated_faces =\
len(combinatorially_degenerated_faces);
else:
num_combinatorial_degenerated_faces = 0;
print_property("num connected components", num_cc);
print_property("num connected surface components", num_f_cc);
print_property("num connected volume components", num_v_cc);
print_property("num isolated vertices", isolated_vertices, 0);
print_property("num duplicated vertices", duplicated_vertices, 0);
print_property("num duplicated faces", duplicated_faces, 0);
print_property("num boundary edges", mesh.num_boundary_edges);
print_property("num boundary loops", mesh.num_boundary_loops);
print_property("num degenerated faces", num_degenerated, 0)
if num_degenerated > 0:
print_property(" combinatorially degenerated",
num_combinatorial_degenerated_faces, 0);
print_property(" geometrically degenerated",
num_degenerated - num_combinatorial_degenerated_faces, 0);
info["num_connected_components"] = num_cc;
info["num_connected_surface_components"] = num_f_cc;
info["num_connected_volume_components"] = num_v_cc;
info["num_isolated_vertices"] = isolated_vertices;
info["num_duplicated_vertices"] = duplicated_vertices;
info["num_duplicated_faces"] = duplicated_faces;
info["num_boundary_edges"] = mesh.num_boundary_edges;
info["num_boundary_loops"] = mesh.num_boundary_loops;
info["num_degenerated_faces"] = num_degenerated;
info["num_combinatorial_degenerated_faces"] =\
num_combinatorial_degenerated_faces;
info["num_geometrical_degenerated_faces"] =\
num_degenerated - num_combinatorial_degenerated_faces;
if mesh.dim == 2 and mesh.vertex_per_face == 3:
tri_orientations = pymesh.get_triangle_orientations(mesh);
num_inverted_tris = np.sum(tri_orientations < 0);
print_property("num inverted triangles:", num_inverted_tris, 0);
info["num_inverted_triangles"] = int(num_inverted_tris);
if mesh.num_voxels > 0 and mesh.vertex_per_voxel == 4:
tet_orientations = pymesh.get_tet_orientations(mesh);
num_degenerate_tets = np.sum(tet_orientations == 0);
num_inverted_tets = np.sum(tet_orientations < 0);
print_property("num degenerated tets:", num_degenerate_tets, 0);
print_property("num inverted tets:", num_inverted_tets, 0);
info["num_degenerated_tets"] = int(num_degenerate_tets);
info["num_inverted_tets"] = int(num_inverted_tets);
is_closed = mesh.is_closed();
is_edge_manifold = mesh.is_edge_manifold();
is_vertex_manifold = mesh.is_vertex_manifold();
is_oriented = mesh.is_oriented();
euler = mesh.euler_characteristic;
print_property("oriented", is_oriented, True);
print_property("closed", is_closed, True)
print_property("edge manifold", is_edge_manifold, True);
print_property("vertex manifold", is_vertex_manifold, True);
print_property("euler characteristic", euler);
info["oriented"] = is_oriented;
info["closed"] = is_closed;
info["vertex_manifold"] = is_vertex_manifold;
info["edge_manifold"] = is_edge_manifold;
info["euler_characteristic"] = euler;