def test_multiphase_FE_strain():
from pymks import MKSRegressionModel
from pymks.datasets import make_elastic_FE_strain_delta
from pymks.datasets import make_elastic_FE_strain_random
from pymks.bases import DiscreteIndicatorBasis
L = 21
i = 3
elastic_modulus = (80, 100, 120)
poissons_ratio = (0.3, 0.3, 0.3)
macro_strain = 0.02
size = (L, L)
X_delta, strains_delta = \
make_elastic_FE_strain_delta(elastic_modulus=elastic_modulus,
poissons_ratio=poissons_ratio,
size=size, macro_strain=macro_strain)
basis = DiscreteIndicatorBasis(len(elastic_modulus))
MKSmodel = MKSRegressionModel(basis)
MKSmodel.fit(X_delta, strains_delta)
np.random.seed(99)
X, strain = make_elastic_FE_strain_random(n_samples=1,
elastic_modulus=elastic_modulus,
poissons_ratio=poissons_ratio,
size=size,
macro_strain=macro_strain)
strain_pred = MKSmodel.predict(X)
assert np.allclose(strain_pred[0, i:-i],
strain[0, i:-i],
rtol=1e-2,
atol=6.1e-3)
def test_cahn_hilliard():
from pymks.datasets.cahn_hilliard_simulation import CahnHilliardSimulation
from pymks.datasets import make_cahn_hilliard
from sklearn import metrics
from pymks import MKSRegressionModel
from pymks import ContinuousIndicatorBasis
mse = metrics.mean_squared_error
n_samples = 100
n_spaces = 20
dt = 1e-3
np.random.seed(0)
X, y = make_cahn_hilliard(n_samples=n_samples,
size=(n_spaces, n_spaces),
dt=dt)
basis = ContinuousIndicatorBasis(10, [-1, 1])
model = MKSRegressionModel(basis)
model.fit(X, y)
X_test = np.array(
[np.random.random((n_spaces, n_spaces)) for i in range(1)])
CHSim = CahnHilliardSimulation(dt=dt)
CHSim.run(X_test)
y_test = CHSim.response
y_pred = model.predict(X_test)
assert mse(y_test[0], y_pred[0]) < 0.03
def test_multiphase_FE_strain():
from pymks import MKSRegressionModel
from pymks.datasets import make_elastic_FE_strain_delta
from pymks.datasets import make_elastic_FE_strain_random
from pymks.bases import DiscreteIndicatorBasis
L = 21
i = 3
elastic_modulus = (80, 100, 120)
poissons_ratio = (0.3, 0.3, 0.3)
macro_strain = 0.02
size = (L, L)
X_delta, strains_delta = \
make_elastic_FE_strain_delta(elastic_modulus=elastic_modulus,
poissons_ratio=poissons_ratio,
size=size, macro_strain=macro_strain)
basis = DiscreteIndicatorBasis(len(elastic_modulus))
MKSmodel = MKSRegressionModel(basis)
MKSmodel.fit(X_delta, strains_delta)
np.random.seed(99)
X, strain = make_elastic_FE_strain_random(n_samples=1,
elastic_modulus=elastic_modulus,
poissons_ratio=poissons_ratio,
size=size,
macro_strain=macro_strain)
strain_pred = MKSmodel.predict(X)
assert np.allclose(strain_pred[0, i:-i], strain[0, i:-i],
rtol=1e-2, atol=6.1e-3)
def test_MKS_elastic_delta():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
X, y_test = get_delta_data(nx, ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
model.fit(X, y_test)
y_pred = model.predict(X)
assert np.allclose(y_pred, y_test, rtol=1e-3, atol=1e-3)
def test_MKS_elastic_delta():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
X, y_test = get_delta_data(nx, ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
model.fit(X, y_test)
y_pred = model.predict(X)
assert np.allclose(y_pred, y_test, rtol=1e-3, atol=1e-3)
def test_resize_coeff():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
resize = 3
X_delta, y_delta = get_delta_data(nx, ny)
X_big_delta, y_big_delta = get_delta_data(resize * nx, resize * ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
big_model = MKSRegressionModel(basis)
model.fit(X_delta, y_delta)
big_model.fit(X_big_delta, y_big_delta)
model.resize_coeff((resize * nx, resize * ny))
assert np.allclose(model.coef_, big_model.coef_, rtol=1e-2, atol=2.1e-3)
def test_resize_coeff():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
resize = 3
X_delta, y_delta = get_delta_data(nx, ny)
X_big_delta, y_big_delta = get_delta_data(resize * nx, resize * ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
big_model = MKSRegressionModel(basis)
model.fit(X_delta, y_delta)
big_model.fit(X_big_delta, y_big_delta)
model.resize_coeff((resize * nx, resize * ny))
assert np.allclose(model.coef_, big_model.coef_,
rtol=1e-2, atol=2.1e-3)
def test_cahn_hilliard():
from pymks.datasets.cahn_hilliard_simulation import CahnHilliardSimulation
from pymks.datasets import make_cahn_hilliard
from sklearn import metrics
from pymks import MKSRegressionModel
from pymks import ContinuousIndicatorBasis
mse = metrics.mean_squared_error
n_samples = 100
n_spaces = 20
dt = 1e-3
np.random.seed(0)
X, y = make_cahn_hilliard(n_samples=n_samples,
size=(n_spaces, n_spaces), dt=dt)
basis = ContinuousIndicatorBasis(10, [-1, 1])
model = MKSRegressionModel(basis)
model.fit(X, y)
X_test = np.array([np.random.random((n_spaces, n_spaces)) for i in range(1)])
CHSim = CahnHilliardSimulation(dt=dt)
CHSim.run(X_test)
y_test = CHSim.response
y_pred = model.predict(X_test)
assert mse(y_test, y_pred) < 0.03
def test_resize_pred():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
resize = 3
X_delta, y_delta = get_delta_data(nx, ny)
X_test, y_test = get_random_data(nx, ny)
X_big_test, y_big_test = get_random_data(resize * nx, resize * ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
model.fit(X_delta, y_delta)
y_pred = model.predict(X_test)
assert np.allclose(y_pred, y_test, rtol=1e-2, atol=6.1e-3)
model.resize_coeff((resize * nx, resize * ny))
y_big_pred = model.predict(X_big_test)
assert np.allclose(y_big_pred, y_big_test, rtol=1e-2, atol=6.1e-2)
def test_resize_pred():
from pymks import MKSRegressionModel
from pymks.bases import DiscreteIndicatorBasis
nx, ny = 21, 21
resize = 3
X_delta, y_delta = get_delta_data(nx, ny)
X_test, y_test = get_random_data(nx, ny)
X_big_test, y_big_test = get_random_data(resize * nx, resize * ny)
basis = DiscreteIndicatorBasis(n_states=2)
model = MKSRegressionModel(basis)
model.fit(X_delta, y_delta)
y_pred = model.predict(X_test)
assert np.allclose(y_pred, y_test, rtol=1e-2, atol=6.1e-3)
model.resize_coeff((resize * nx, resize * ny))
y_big_pred = model.predict(X_big_test)
assert np.allclose(y_big_pred, y_big_test, rtol=1e-2, atol=6.1e-2)
def make_elastic_stress_random(n_samples=[10, 10],
elastic_modulus=(100, 150),
poissons_ratio=(0.3, 0.3),
size=(21, 21),
macro_strain=0.01,
grain_size=[(3, 3), (9, 9)],
seed=10,
volume_fraction=None,
percent_variance=None):
"""
Generates microstructures and their macroscopic stress values for an
applied macroscopic strain.
Args:
n_samples (int, optional): number of samples
elastic_modulus (tuple, optional): list of elastic moduli for the
different phases.
poissons_ratio (tuple, optional): list of poisson's ratio values for
the phases.
size (tuple, optional): size of the microstructures
macro_strain (tuple, optional): macroscopic strain applied to the
sample.
grain_size (tuple, optional): effective dimensions of grains
seed (int, optional): seed for random number generator
volume_fraction(tuple, optional): specify the volume fraction of
each phase
percent_variance(int, optional): Only used if volume_fraction is
specified. Randomly varies the volume fraction of the
microstructure.
Returns:
array of microstructures with dimensions (n_samples, n_x, ...) and
effective stress values
"""
if not isinstance(grain_size[0], (list, tuple, np.ndarray)):
grain_size = (grain_size, )
if not isinstance(n_samples, (list, tuple, np.ndarray)):
n_samples = (n_samples, )
if volume_fraction is None:
volume_fraction = (None, ) * len(n_samples)
vf_0 = volume_fraction[0]
if not isinstance(vf_0, (list, tuple, np.ndarray)) and vf_0 is not None:
volume_fraction = (volume_fraction, )
np.random.seed(seed)
if not isinstance(size, (list, tuple, np.ndarray)) or len(size) > 3:
raise RuntimeError('size must have length of 2 or 3')
[
RuntimeError('dimensions of size and grain_size are not the same.')
for grains in grain_size if len(size) != len(grains)
]
if vf_0 is not None:
[
RuntimeError('dimensions of size and grain_size are not the same.')
for volume_frac in volume_fraction
if len(elastic_modulus) != len(volume_frac)
]
if len(elastic_modulus) != len(poissons_ratio):
raise RuntimeError('length of elastic_modulus and poissons_ratio are' \
'not the same.')
np.random.seed(seed)
seed = np.random.randint(100, size=(len(volume_fraction), ))
X_cal, y_cal = make_elastic_FE_strain_delta(elastic_modulus,
poissons_ratio, size,
macro_strain)
n_states = len(elastic_modulus)
basis = DiscreteIndicatorBasis(n_states)
model = MKSRegressionModel(basis=basis)
model.fit(X_cal, y_cal)
X = np.concatenate([
make_microstructure(n_samples=sample,
size=size,
n_phases=n_states,
grain_size=gs,
seed=s,
volume_fraction=vf,
percent_variance=percent_variance) for vf, s, gs,
sample in zip(volume_fraction, seed, grain_size, n_samples)
])
X_ = basis.discretize(X)
index = tuple([None for i in range(len(size) + 1)]) + (slice(None), )
modulus = np.sum(X_ * np.array(elastic_modulus)[index], axis=-1)
y_stress = model.predict(X) * modulus
return X, np.average(y_stress.reshape(len(y_stress), -1), axis=1)
def make_elastic_stress_random(n_samples=[10, 10], elastic_modulus=(100, 150),
poissons_ratio=(0.3, 0.3), size=(21, 21),
macro_strain=0.01, grain_size=[(3, 3), (9, 9)],
seed=10, volume_fraction=None,
percent_variance=None):
"""
Generates microstructures and their macroscopic stress values for an
applied macroscopic strain.
Args:
n_samples (int, optional): number of samples
elastic_modulus (tuple, optional): list of elastic moduli for the
different phases.
poissons_ratio (tuple, optional): list of poisson's ratio values for
the phases.
size (tuple, optional): size of the microstructures
macro_strain (tuple, optional): macroscopic strain applied to the
sample.
grain_size (tuple, optional): effective dimensions of grains
seed (int, optional): seed for random number generator
volume_fraction(tuple, optional): specify the volume fraction of
each phase
percent_variance(int, optional): Only used if volume_fraction is
specified. Randomly varies the volume fraction of the
microstructure.
Returns:
array of microstructures with dimensions (n_samples, n_x, ...) and
effective stress values
Example
>>> X, y = make_elastic_stress_random(n_samples=1, elastic_modulus=(1, 1),
... poissons_ratio=(1, 1),
... grain_size=(3, 3), macro_strain=1.0)
>>> assert np.allclose(y, np.ones(y.shape))
>>> X, y = make_elastic_stress_random(n_samples=1, grain_size=(1, 1),
... elastic_modulus=(100, 200),
... size=(2, 2), poissons_ratio=(1, 3),
... macro_strain=1., seed=3)
>>> X_result = np.array([[[1, 1],
... [0, 1]]])
>>> assert np.allclose(X, X_result)
>>> assert float(np.round(y, decimals=5)[0]) == 228.74696
>>> X, y = make_elastic_stress_random(n_samples=1, grain_size=(1, 1, 1),
... elastic_modulus=(100, 200),
... poissons_ratio=(1, 3), seed=3,
... macro_strain=1., size=(2, 2, 2))
>>> X_result = np.array([[[1, 1],
... [0, 0]],
... [[1, 1],
... [0, 0]]])
>>> assert np.allclose(X, X_result)
>>> assert np.round(y[0]).astype(int) == 150
"""
if not isinstance(grain_size[0], (list, tuple, np.ndarray)):
grain_size = (grain_size,)
if not isinstance(n_samples, (list, tuple, np.ndarray)):
n_samples = (n_samples,)
if volume_fraction is None:
volume_fraction = (None,) * len(n_samples)
vf_0 = volume_fraction[0]
if not isinstance(vf_0, (list, tuple, np.ndarray)) and vf_0 is not None:
volume_fraction = (volume_fraction,)
if not isinstance(size, (list, tuple, np.ndarray)) or len(size) > 3:
raise RuntimeError('size must have length of 2 or 3')
[RuntimeError('dimensions of size and grain_size are not the same.')
for grains in grain_size if len(size) != len(grains)]
if vf_0 is not None:
[RuntimeError('dimensions of size and grain_size are not the same.')
for volume_frac in volume_fraction
if len(elastic_modulus) != len(volume_frac)]
if len(elastic_modulus) != len(poissons_ratio):
raise RuntimeError('length of elastic_modulus and poissons_ratio are \
not the same.')
X_cal, y_cal = make_elastic_FE_strain_delta(elastic_modulus,
poissons_ratio, size,
macro_strain)
n_states = len(elastic_modulus)
basis = DiscreteIndicatorBasis(n_states)
model = MKSRegressionModel(basis=basis)
model.fit(X_cal, y_cal)
X = np.concatenate([make_microstructure(n_samples=sample, size=size,
n_phases=n_states,
grain_size=gs, seed=seed,
volume_fraction=vf,
percent_variance=percent_variance)
for vf, gs, sample in zip(volume_fraction,
grain_size, n_samples)])
X_ = basis.discretize(X)
index = tuple([None for i in range(len(size) + 1)]) + (slice(None),)
modulus = np.sum(X_ * np.array(elastic_modulus)[index], axis=-1)
y_stress = model.predict(X) * modulus
return X, np.average(y_stress.reshape(len(y_stress), -1), axis=1)
def make_elastic_stress_random(n_samples=[10, 10], elastic_modulus=(100, 150),
poissons_ratio=(0.3, 0.3), size=(21, 21),
macro_strain=0.01, grain_size=[(3, 3), (9, 9)],
seed=10):
"""
Generates microstructures and their macroscopic stress values for an
applied macroscopic strain.
Args:
n_samples (int, optional): number of samples
elastic_modulus (tuple, optional): list of elastic moduli for the
different phases.
poissons_ratio (tuple, optional): list of poisson's ratio values for
the phases.
size (tuple, optional): size of the microstructures
macro_strain (tuple, optional): macroscopic strain applied to the
sample.
grain_size (tuple, optional): effective dimensions of grains
seed (int, optional): seed for random number generator
Returns:
array of microstructures with dimensions (n_samples, n_x, ...) and
effective stress values
Example
>>> X, y = make_elastic_stress_random(n_samples=1, elastic_modulus=(1, 1),
... poissons_ratio=(1, 1),
... grain_size=(3, 3), macro_strain=1.0)
>>> assert np.allclose(y, np.ones(y.shape))
>>> X, y = make_elastic_stress_random(n_samples=1, grain_size=(1, 1),
... elastic_modulus=(100, 200),
... size=(2, 2), poissons_ratio=(1, 3),
... macro_strain=1., seed=3)
>>> X_result = np.array([[[1, 1],
... [0, 1]]])
>>> assert np.allclose(X, X_result)
>>> assert float(np.round(y, decimals=5)[0]) == 228.74696
>>> X, y = make_elastic_stress_random(n_samples=1, grain_size=(1, 1, 1),
... elastic_modulus=(100, 200),
... poissons_ratio=(1, 3), seed=3,
... macro_strain=1., size=(2, 2, 2))
>>> X_result = np.array([[[1, 1],
... [0, 0]],
... [[1, 1],
... [0, 0]]])
>>> assert np.allclose(X, X_result)
>>> assert np.round(y[0]).astype(int) == 150
"""
if not isinstance(grain_size[0], (list, tuple, np.ndarray)):
grain_size = (grain_size,)
if not isinstance(n_samples, (list, tuple, np.ndarray)):
n_samples = (n_samples,)
if not isinstance(size, (list, tuple, np.ndarray)) or len(size) > 3:
raise RuntimeError('size must have length of 2 or 3')
[RuntimeError('dimensions of size and grain_size are not the same.')
for grains in grain_size if len(size) != len(grains)]
if len(elastic_modulus) != len(poissons_ratio):
raise RuntimeError('length of elastic_modulus and poissons_ratio are \
not the same.')
X_cal, y_cal = make_elastic_FE_strain_delta(elastic_modulus,
poissons_ratio, size,
macro_strain)
n_states = len(elastic_modulus)
basis = DiscreteIndicatorBasis(n_states)
model = MKSRegressionModel(basis=basis)
model.fit(X_cal, y_cal)
X = np.concatenate([make_microstructure(n_samples=sample, size=size,
n_phases=n_states,
grain_size=gs, seed=seed) for gs,
sample in zip(grain_size, n_samples)])
X_ = basis.discretize(X)
index = tuple([None for i in range(len(size) + 1)]) + (slice(None),)
modulus = np.sum(X_ * np.array(elastic_modulus)[index], axis=-1)
y_stress = model.predict(X) * modulus
return X, np.average(y_stress.reshape(np.sum(n_samples), y_stress[0].size),
axis=1)
