def __init__(self,
chr=None,
chromosome=None,
chromosomeSize=None,
start=None,
stop=None,
overlapStart=None,
overlapStop=None,
**keywords):
PassingData.__init__(self, chr=chr, chromosome=chromosome, chromosomeSize=chromosomeSize, \
start=start, stop=stop,
overlapStart=overlapStart, overlapStop=overlapStop, **keywords)
if not hasattr(self, 'file'):
self.file = None
if not hasattr(self, 'jobLs'):
self.jobLs = []
if self.chr is None and self.chromosome:
self.chr = self.chromosome
elif self.chr and self.chromosome is None:
self.chromosome = self.chr
if self.overlapStart is None:
self.overlapStart = self.start
if self.overlapStop is None:
self.overlapStop = self.stop
self.subIntervalLs = []
self.subIntervalLs.append((self.overlapStart, self.overlapStop))
def __init__(self, **keywords):
self.isPhased = None
self.ploidy = None
self.locusIDList = []
self.haplotypeList = []
self.locusPositionList = []
PassingData.__init__(self, **keywords)