Example #1
0
def align_clusters(dst, src, scale):
    """ Scale, rotate, translate srcLoc w.r.t. dst. """
    assert(isinstance(src, Positions))
    assert(isinstance(dst, Positions))
    if scale:
        stitcher = AoAStitcher(reflectable=True)
    else:
        stitcher = DistStitcher()
    stitcher.align(dst, src)
Example #2
0
def align_clusters(dst, src, scale):
    """ Scale, rotate, translate srcLoc w.r.t. dst. """
    assert (isinstance(src, Positions))
    assert (isinstance(dst, Positions))
    if scale:
        stitcher = AoAStitcher(reflectable=True)
    else:
        stitcher = DistStitcher()
    stitcher.align(dst, src)
Example #3
0
    def test_aoa_stitcher(self):
        src = self.setup_positions([[0, 1, 2, 3, 4]])
        dst = self.setup_positions([[0, 1, 2, 5, 6]])

        #theta = 60/180.*pi
        #R = array([[cos(theta), -sin(theta)], [sin(theta), cos(theta)]])  #ccw
        #self.transform(src, R, [-1.62, -0.8], 0.5)  #transform src positions
        self.transform(src)

        stitcher = AoAStitcher()
        stitcher.stitch(dst, src)

        rms = get_rms(self.test_cluster, dst)
        self.assertTrue(rms < 0.001, 'Stitching was not good enough.')
        self.assertTrue(len(dst) == 1, 'Wrong number of subclusters.')
Example #4
0
    def test_aoa_stitcher(self):
        src = self.setup_positions([[0, 1, 2, 3, 4]])
        dst = self.setup_positions([[0, 1, 2, 5, 6]])

        #theta = 60/180.*pi
        #R = array([[cos(theta), -sin(theta)], [sin(theta), cos(theta)]])  #ccw
        #self.transform(src, R, [-1.62, -0.8], 0.5)  #transform src positions
        self.transform(src)

        stitcher = AoAStitcher()
        stitcher.stitch(dst, src)

        rms = get_rms(self.test_cluster, dst)
        self.assertTrue(rms<0.001, 'Stitching was not good enough.')
        self.assertTrue(len(dst)==1, 'Wrong number of subclusters.')