def test_RSN_fetch_nodes_and_labels2(): # Set example inputs base_dir = str(Path(__file__).parent / "examples") #base_dir = '/Users/rxh180012/PyNets-development/tests/examples' parlistfile = base_dir + '/whole_brain_cluster_labels_PCA200.nii.gz' atlas_select = 'whole_brain_cluster_labels_PCA200' dir_path = base_dir + '/997' func_file = dir_path + '/sub-997_ses-01_task-REST_run-01_bold_space-MNI152NLin2009cAsym_preproc_masked.nii.gz' ref_txt = None parc = False use_AAL_naming = True start_time = time.time() [RSN_label_names, RSN_coords, atlas_name, _, _, par_max, parlistfile, _] = nodemaker.fetch_nodes_and_labels(atlas_select, parlistfile, ref_txt, parc, func_file, use_AAL_naming) print("%s%s%s" % ('RSN_fetch_nodes_and_labels (Spherical Nodes) --> finished: ', str(np.round(time.time() - start_time, 1)), 's')) assert parlistfile is not None assert par_max is not None assert atlas_name is not None assert RSN_coords is not None assert RSN_label_names is not None
def test_RSN_fetch_nodes_and_labels1(): # Set example inputs base_dir = str(Path(__file__).parent / "examples") parlistfile = base_dir + '/whole_brain_cluster_labels_PCA200.nii.gz' atlas = 'whole_brain_cluster_labels_PCA200' dir_path = base_dir + '/002/fmri' func_file = dir_path + '/002.nii.gz' ref_txt = None parc = True use_AAL_naming = True start_time = time.time() [ RSN_labels, RSN_coords, atlas_name, _, parcel_list, par_max, parlistfile, _ ] = nodemaker.fetch_nodes_and_labels(atlas, parlistfile, ref_txt, parc, func_file, use_AAL_naming) print("%s%s%s" % ('RSN_fetch_nodes_and_labels (Parcel Nodes) --> finished: ', str(np.round(time.time() - start_time, 1)), 's')) assert parlistfile is not None assert par_max is not None assert parcel_list is not None assert atlas_name is not None assert RSN_coords is not None assert RSN_labels is not None