def write_bathy(outfld, lon, lat, depth, spherical=True):
'''
Function to generate bathymetry files to be used as input for WW3 v4.18
PARAMETERS:
-----------
outfld : folder to write the files to
lon : longitudes (or x for cartesian) at every grid point
(I assume they have been meshgridded)
lat : latitudes (or y for cartesian) at every grid point
spherical : True for spherical grids and False for cartesian grids
OUTPUT:
-------
ww3_grid.bot : ASCII file containing the grid depths
ww3_grid.lon : ASCII file containing the longitudes (or x locations)
ww3_grid.lat : ASCII file containing the latitudes (or y locations)
ww3_grid.nc : NetCDF file containing the grid information
ww3_grid.inp : Input file template to be used for the grid preprocessor.
You will need to fix many things it will probably not
work out of the box.
NOTES:
------
I assume that if the grid is in spherical coordiantes the latitude and
longitudes are given in decimal degrees (east). On the other hand if the
grid is cartesian I assume meters.
'''
# Convert longitudes to degrees east
lon = gangles.wrapto360(lon)
# Write ascii files --------------------------------------------------------
# Bathymetry
fid = open(outfld + 'ww3_grid.bot', 'w')
for aa in range(depth.shape[0]):
for bb in range(depth.shape[1]):
fid.write('%12.4f' % depth[aa, bb])
fid.write('\n')
fid.close()
# Latitude File
fid = open(outfld + 'ww3_grid.lat', 'w')
for aa in range(lat.shape[0]):
for bb in range(lat.shape[1]):
fid.write('%12.4f' % lat[aa, bb])
fid.write('\n')
fid.close()
# Longitude File
fid = open(outfld + 'ww3_grid.lon', 'w')
for aa in range(lon.shape[0]):
for bb in range(lon.shape[1]):
fid.write('%12.4f' % lon[aa, bb])
fid.write('\n')
fid.close()
# Write netcdf file --------------------------------------------------------
# Global attributes
nc = netCDF4.Dataset(outfld + 'ww3_grid.nc', 'w', format='NETCDF4')
nc.Description = 'Wavewatch III Bathymetry'
nc.Author = getpass.getuser()
nc.Created = time.ctime()
nc.Owner = 'Nearshore Modeling Group (http://ozkan.oce.orst.edu/nmg)'
nc.Software = 'Created with Python ' + sys.version
nc.NetCDF_Lib = str(netCDF4.getlibversion())
nc.Script = os.path.realpath(__file__)
# Create dimensions
nc.createDimension('xi_rho', lon.shape[1])
nc.createDimension('eta_rho', lon.shape[0])
# Write coordinates and depth to netcdf file
if spherical:
nc.createVariable('lat_rho', 'f8', ('eta_rho', 'xi_rho'))
nc.variables['lat_rho'].units = 'degree_north'
nc.variables['lat_rho'].long_name = 'latitude of RHO-points'
nc.variables['lat_rho'][:] = lat
else:
nc.createVariable('y_rho', 'f8', ('eta_rho', 'xi_rho'))
nc.variables['y_rho'].units = 'meter'
nc.variables['y_rho'].long_name = 'y location of RHO-points'
nc.variables['y_rho'][:] = lat
# Write longitude
if spherical:
nc.createVariable('lon_rho', 'f8', ('eta_rho', 'xi_rho'))
nc.variables['lon_rho'].units = 'degree_east'
nc.variables['lon_rho'].long_name = 'latitude of RHO-points'
nc.variables['lon_rho'][:] = lon
else:
nc.createVariable('x_rho', 'f8', ('eta_rho', 'xi_rho'))
nc.variables['x_rho'].units = 'meter'
nc.variables['x_rho'].long_name = 'x location of RHO-points'
nc.variables['x_rho'][:] = lon
# Write water depth
nc.createVariable('h', 'f8', ('eta_rho', 'xi_rho'))
nc.variables['h'].units = 'meter'
nc.variables['h'].long_name = 'bathymetry at RHO-points'
nc.variables['h'][:] = depth
# Close NetCDF file
nc.close()
# Write input file for grid preprocessor ----------------------------------
# Create a generic input file
fid = open(outfld + 'ww3_grid.inp', 'w')
fid.write(
'$ ----------------------------------------------------------$\n')
fid.write(
'$ WAVEWATCH III Grid preprocessor input file $\n')
fid.write(
'$ ----------------------------------------------------------$\n')
fid.write('\'Grid Name\'\n')
fid.write('$\n')
fid.write('1.1 0.030 40 36 0.\n')
fid.write('$\n')
fid.write('F T T T T T\n')
fid.write('$\n')
fid.write('3600. 600. 3600. 300.\n')
fid.write('$\n')
fid.write('END OF NAMELISTS\n')
fid.write('$\n')
fid.write(
'$ Define grid --------------------------------------------- $\n')
fid.write('$ Five records containing :\n')
fid.write(
'$ 1 Type of grid, coordinate system and type of closure: GSTRG, FLAGLL,\n'
)
fid.write(
'$ CSTRG. Grid closure can only be applied in spherical coordinates.\n'
)
fid.write('$ GSTRG : String indicating type of grid :\n')
fid.write('$ ' 'RECT' ' : rectilinear\n')
fid.write('$ ' 'CURV' ' : curvilinear\n')
fid.write('$ FLAGLL : Flag to indicate coordinate system :\n')
fid.write('$ T : Spherical (lon/lat in degrees)\n')
fid.write('$ F : Cartesian (meters)\n')
fid.write(
'$ CSTRG : String indicating the type of grid index space closure :\n'
)
fid.write('$ ' 'NONE' ' : No closure is applied\n')
fid.write('$ '
'SMPL'
' : Simple grid closure : Grid is periodic in the\n')
fid.write(
'$ : i-index and wraps at i=NX+1. In other words,\n'
)
fid.write(
'$ : (NX+1,J) => (1,J). A grid with simple closure\n'
)
fid.write(
'$ : may be rectilinear or curvilinear.\n')
fid.write('$ '
'TRPL'
' : Tripole grid closure : Grid is periodic in the\n')
fid.write(
'$ : i-index and wraps at i=NX+1 and has closure at\n'
)
fid.write(
'$ : j=NY+1. In other words, (NX+1,J<=NY) => (1,J)\n'
)
fid.write(
'$ : and (I,NY+1) => (MOD(NX-I+1,NX)+1,NY). Tripole\n'
)
fid.write(
'$ : grid closure requires that NX be even. A grid\n'
)
fid.write(
'$ : with tripole closure must be curvilinear.\n'
)
fid.write(
'$ 2 NX, NY. As the outer grid lines are always defined as land\n')
fid.write('$ points, the minimum size is 3x3.\n')
fid.write('$ 3 Unit number of file with x-coordinate.\n')
fid.write(
'$ Scale factor and add offset: x <= scale_fac * x_read + add_offset.\n'
)
fid.write(
'$ IDLA, IDFM, format for formatted read, FROM and filename.\n')
fid.write('$ 4 Unit number of file with y-coordinate.\n')
fid.write(
'$ Scale factor and add offset: y <= scale_fac * y_read + add_offset.\n'
)
fid.write(
'$ IDLA, IDFM, format for formatted read, FROM and filename.\n')
fid.write(
'$ 5 Limiting bottom depth (m) to discriminate between land and sea\n'
)
fid.write(
'$ points, minimum water depth (m) as allowed in model, unit number\n'
)
fid.write(
'$ of file with bottom depths, scale factor for bottom depths (mult.),\n'
)
fid.write(
'$ IDLA, IDFM, format for formatted read, FROM and filename.\n')
fid.write('$ IDLA : Layout indicator :\n')
fid.write('$ 1 : Read line-by-line bottom to top.\n')
fid.write('$ 2 : Like 1, single read statement.\n')
fid.write('$ 3 : Read line-by-line top to bottom.\n')
fid.write('$ 4 : Like 3, single read statement.\n')
fid.write('$ IDFM : format indicator :\n')
fid.write('$ 1 : Free format.\n')
fid.write(
'$ 2 : Fixed format with above format descriptor.\n'
)
fid.write('$ 3 : Unformatted.\n')
fid.write('$ FROM : file type parameter\n')
fid.write('$ ' 'UNIT' ' : open file by unit number only.\n')
fid.write('$ '
'NAME'
' : open file by name and assign to unit.\n')
fid.write(
'$ If the Unit Numbers in above files is 10 then data is read from this file\n'
)
fid.write('$\n')
# I prefer considering only curvilinear grids.
if spherical:
fid.write('\'CURV\' T \'NONE\'\n')
else:
fid.write('\'CURV\' F \'NONE\'\n')
# Grid size
fid.write(np.str(lon.shape[1]) + ' ' + np.str(lon.shape[0]) + '\n')
# Path to grid name
fid.write(
' 11 1.0 0. 1 1 \'(....)\' \'NAME\' \'ww3_grid.lon\'\n')
fid.write(
' 12 1.0 0. 1 1 \'(....)\' \'NAME\' \'ww3_grid.lat\'\n')
# Bottom bathymetry information
fid.write('$ Bottom bathymetry\n')
fid.write(
' -0.5 0.05 13 1 1 \'(....)\' \'NAME\' \'ww3_grid.bot\'\n')
fid.write('$ Subgrid Information\n')
fid.write(' 10 1 1 \'(....)\' \'PART\' \'dummy\'\n')
# Subgrid information
fid.write('$\n')
fid.write(' 0 0 F\n')
fid.write('$\n')
fid.write(' 0 0 F\n')
fid.write(' 0 0\n')
fid.write('$\n')
fid.write(' 0. 0. 0. 0. 0\n')
fid.write(
'$ ----------------------------------------------------------$\n')
fid.write(
'$ End of input file $\n')
fid.write(
'$ ----------------------------------------------------------$\n')
# Close input file
fid.close()
def write_nc_spec(latitude,
longitude,
spectrum,
frequency,
direction,
time1,
station,
fileout=None,
spherical=True):
'''
Parameters
----------
latitude : Array of the latitudes of each spectra point [Degree]
Dimension (time,station)
longitude : Array of the longitudes of each spectra point [Degree east]
Dimension (time,station)
spectrum : Variance spectrum [m2/Hz/rad]
Dimensions (time,station,frequency,direction)
frequency : frequency at each bin center [Hz]
direction : direction of propagation of each spectral bin [rad]
time : vector with days from 1900-01-01 00:00:00
station : Array with station names (not longer than 16 characters)
fileout : Output netCDF file
spherical : Flag for metadata. For spherical coordinates True and False
for cartesian coordiantes.
Notes:
------
Direction of where waves are traveling to.
Version:
--------
v0.1 code created:
Gabriel Garcia Medina, Saeed Moghimi, April 2015
'''
# For testing purposes only ------------------------------------------------
#nctest = netCDF4.Dataset('/home/shusin2/shared/nmg/pycodes/'
# 'ww3.basin.201401_spec.nc','r')
#fileout = '/home/shusin2/shared/nmg/pycodes/test2.nc'
#time1 = nctest.variables['time'][:]
#station = nctest.variables['station'][:1]
#latitude = nctest.variables['latitude'][:,:1] * 0.0
#longitude = nctest.variables['longitude'][:,:1] * 0.0+15.0
#frequency = nctest.variables['frequency'][:]
#direction = nctest.variables['direction'][:]
#spectrum = nctest.variables['efth'][:,:1,:,:]
# -------------------------------------------------------------------------
# # Variable dictionary
# varinfo = defaultdict(dict)
# varinfo['frequency']['units'] = 's-1'
# varinfo['frequency']['long_name'] = 'frequency of center band'
# varinfo['frequency']['standard_name'] = 'sea_surface_wave_frequency'
# varinfo['direction']['units'] = 'degree'
# varinfo['direction']['long_name'] = 'sea surface wave to direction'
# varinfo['direction']['standard_name'] = 'sea_surface_wave_to_direction'
# varinfo['latitude']['units'] = 'degree_north'
# varinfo['latitude']['long_name'] = 'latitude'
# varinfo['latitude']['standard_name'] = 'latitude'
# varinfo['longitude']['units'] = 'degree_east'
# varinfo['longitude']['long_name'] = 'longitude'
# varinfo['longitude']['standard_name'] = 'longitude'
# varinfo['efth']['units'] = 'm2 s rad-1'
# varinfo['efth']['long_name'] = ('sea surface wave directional variance' +
# ' spectral density')
# Create netcdf file
if fileout:
nc = netCDF4.Dataset(fileout, 'w')
else:
print("Writing NetCDF file " + os.getcwd() + "/ww3_spec_inp.nc")
nc = netCDF4.Dataset('./ww3_spec_inp.nc', 'w')
# Create general attributes
nc.Description = 'Wavewatch III 4.18 input spectra file'
nc.Author = getpass.getuser()
nc.Created = time.ctime()
nc.Owner = 'Nearshore Modeling Group (http://ozkan.oce.orst.edu/nmg)'
nc.Software = 'Created with Python ' + sys.version
nc.NetCDF_Lib = str(netCDF4.getlibversion())
nc.Script = os.path.realpath(__file__)
# Create dimensions
nc.createDimension('time', 0)
nc.createDimension('frequency', frequency.shape[0])
nc.createDimension('direction', direction.shape[0])
nc.createDimension('string16', 16)
nc.createDimension('station', len(station))
# Write time
nc.createVariable('time', 'f8', ('time'))
nc.variables['time'].long_name = 'julian day (UT)'
nc.variables['time'].standard_time = 'time'
nc.variables['time'].units = 'days since 1900-01-01T00:00:00Z'
nc.variables['time'].conventions = ('Relative julian days with decimal ' +
'part (as parts of the day)')
nc.variables['time'][:] = time1
# Write station id and name
nc.createVariable('station', 'i8', ('station'))
nc.variables['station'].long_name = 'station id'
nc.variables['station'].axis = 'X'
nc.variables['station'][:] = np.arange(0, len(station), 1)
# IDK why they do this in WW3 so I am trying to mimic this behaviour
nc.createVariable('string16', 'i8', ('string16'))
nc.variables['string16'].long_name = 'station_name number of characters'
nc.variables['string16'].axis = 'W'
nc.variables['string16'][:] = np.empty((16, ), dtype=int)
# Write station names
nc.createVariable('station_name', 'S1', ('station', 'string16'))
nc.variables['station_name'].long_name = 'station name'
nc.variables['station_name'].content = 'XW'
nc.variables['station_name'].associates = 'station string16'
for aa in range(len(station)):
nc.variables['station_name'][aa] = station[aa]
# Spatial dimensions
nc.createVariable('latitude', 'f8', ('time', 'station'))
nc.variables['latitude'].long_name = 'latitude'
nc.variables['latitude'].standard_name = 'latitude'
nc.variables['latitude'].units = 'degree_north'
nc.variables['latitude'].valid_min = -90.0
nc.variables['latitude'].valid_max = 90.0
nc.variables['latitude'].content = 'TX'
nc.variables['latitude'].associates = 'time station'
nc.variables['latitude'][:] = latitude
nc.createVariable('longitude', 'f8', ('time', 'station'))
nc.variables['longitude'].long_name = 'longitude'
nc.variables['longitude'].standard_name = 'longitude'
nc.variables['longitude'].units = 'degree_east'
nc.variables['longitude'].valid_min = -180.0
nc.variables['longitude'].valid_max = 180.0
nc.variables['longitude'].content = 'TX'
nc.variables['longitude'].associates = 'time station'
nc.variables['longitude'][:] = gangles.wrapto180(latitude)
# Create frequency and direction vectors
nc.createVariable('frequency', 'f8', ('frequency'))
nc.variables['frequency'].long_name = 'frequency of center band'
nc.variables['frequency'].standard_name = 'sea_surface_wave_frequency'
nc.variables['frequency'].globwave_name = 'frequency'
nc.variables['frequency'].units = 's-1'
nc.variables['frequency'].valid_min = 0.0
nc.variables['frequency'].valid_max = 10.0
nc.variables['frequency'].axis = 'Y'
nc.variables['frequency'][:] = frequency
nc.createVariable('direction', 'f8', ('direction'))
nc.variables['direction'].long_name = 'sea surface wave to direction'
nc.variables['direction'].standard_name = 'sea_surface_wave_to_direction'
nc.variables['direction'].globwave_name = 'direction'
nc.variables['direction'].units = 'degree'
nc.variables['direction'].valid_min = 0.0
nc.variables['direction'].valid_max = 360.0
nc.variables['direction'][:] = gangles.wrapto360(direction)
# Write spectral data
nc.createVariable('efth', 'f8',
('time', 'station', 'frequency', 'direction'))
nc.variables['efth'].long_name = ('sea surface wave directional variance' +
' spectral density')
nc.variables['efth'].standard_name = ('sea_surface_wave_directional_' +
'variance_spectral_density')
nc.variables[
'efth'].globwave_name = 'directional_variance_spectral_density'
nc.variables['efth'].units = 'm2 s rad-1'
nc.variables['efth'].scale_factor = 1.0
nc.variables['efth'].add_offset = 0.0
nc.variables['efth'].valid_min = 0.0
nc.variables['efth'].valid_max = 1.0e20
nc.variables['efth'].content = 'TXYZ'
nc.variables['efth'].associates = 'time station frequency direction'
nc.variables['efth'][:] = spectrum
nc.close()
def write_wind_nc(outfld,timeVec,lon,lat,uwnd,vwnd,temp=False):
'''
Function to generate bathymetry files to be used as input for WW3 v4.18
PARAMETERS:
-----------
outfld : folder to write the files to
timeVec : Time vector (datetime array)
lon : longitudes (or x for cartesian) at every grid point
(I assume they have been meshgridded)
lat : latitudes (or y for cartesian) at every grid point
uwnd : zonal component of wind [m/s]
vwnd : meridional component of wind [m/s]
temp : (optional) Air-sea temperature differences [C]
OUTPUT:
-------
ww3_wind.nc : NetCDF file containing the grid information
NOTES:
------
I assume that if the grid is in spherical coordiantes the latitude and
longitudes are given in decimal degrees (east). On the other hand if the
grid is cartesian I assume meters.
'''
spherical = True # Placeholder for future expansion to cartesian
# Convert longitudes to degrees east
lon = _gangles.wrapto360(lon)
# Write netcdf file --------------------------------------------------------
# Global attributes
nc = _netCDF4.Dataset(outfld + '/ww3_wind.nc', 'w', format='NETCDF4')
nc.Description = 'Wavewatch III Wind Input'
nc.Author = _getpass.getuser()
nc.Created = _time.ctime()
nc.Software = 'Created with Python ' + _sys.version
nc.NetCDF_Lib = str(_netCDF4.getlibversion())
nc.Script = _os.path.realpath(__file__)
# Create dimensions
nc.createDimension('longitude', lon.shape[1])
nc.createDimension('latitude',lon.shape[0])
nc.createDimension('time',0)
# Write coordinates and depth to netcdf file
if spherical:
nc.createVariable('latitude','f8',('latitude','longitude'))
nc.variables['latitude'].units = 'degree_north'
nc.variables['latitude'].long_name = 'latitude of RHO-points'
nc.variables['latitude'][:] = lat
else:
nc.createVariable('y_rho','f8',('eta_rho','xi_rho'))
nc.variables['y_rho'].units = 'meter'
nc.variables['y_rho'].long_name = 'y location of RHO-points'
nc.variables['y_rho'][:] = lat
# Write longitude
if spherical:
nc.createVariable('longitude','f8',('latitude','longitude'))
nc.variables['longitude'].units = 'degree_east'
nc.variables['longitude'].long_name = 'latitude of RHO-points'
nc.variables['longitude'][:] = lon
else:
nc.createVariable('x_rho','f8',('eta_rho','xi_rho'))
nc.variables['x_rho'].units = 'meter'
nc.variables['x_rho'].long_name = 'x location of RHO-points'
nc.variables['x_rho'][:] = lon
# Time vector
nc.createVariable('time','f8',('time'))
nc.variables['time'].units = 'seconds since 1900-01-01 00:00:00'
nc.variables['time'].conventions = 'relative julian seconds'
baseTime = _datetime.datetime(1900,1,1)
timeVec = _np.array([(aa - baseTime).total_seconds() for aa in timeVec])
nc.variables['time'][:] = timeVec
# Write wind components
nc.createVariable('UWND','f8',('time','latitude','longitude'))
nc.variables['UWND'].units = 'meter second-1'
nc.variables['UWND'].long_name = 'Zonal component of wind'
nc.variables['UWND'][:] = uwnd
nc.createVariable('VWND','f8',('time','latitude','longitude'))
nc.variables['VWND'].units = 'meter second-1'
nc.variables['VWND'].long_name = 'Meridional component of wind'
nc.variables['VWND'][:] = vwnd
if temp:
nc.createVariable('temp','f8',('time','latitude','longitude'))
nc.variables['temp'].units = 'degrees C'
nc.variables['temp'].long_name = 'Air-sea temperature differences'
nc.variables['temp'][:] = temp
# Close NetCDF file
nc.close()
def spec_bulk_params(freq, dirs, spec, IGBand=[0.005, 0.05], zeroth=True):
"""
Function to compute bulk wave parameters from frequency-direction spectrum
Parameters:
-----------
freq : Vector of spectral frequencies [Hz]
dirs : Vector of directions (nautical convention) [Deg or Rad]
spec : Wave spectrum [m2/Hz/Deg or m2/Hz/Deg]
The shape must be [freq,dirs]
IGBand : Infragravity wave frequency cutoff
defaults to 0.005-0.05 Hz
zeroth : If true will remove the first frequency from the analysis
Returns:
--------
Dictionary containing bulk wave parameters
Hs : Significant wave height [m]
H1 : Mean wave height [m]
Tp : Peak wave period [s]
Tp_fit : Peak wave period computed from second order polynomial fit
near Tp[s]
Tm01 : First moment wave period [s]
Tm02 : Second moment wave period [s]
Te : Energy period [s]
Sw : Spectral width (m0*m2/m1/m1 - 1)**2
Tm01IG : First moment wave period over the infragravity frequency band
TpIG : Peak wave period over the infragravity frequency band [s]
HsIG : Significant wave height in the infragravity frequency band [m]
Dm : Mean wave direction, second moment (Kuik et al. 1988)
Dp : Peak wave direction (computed from directional spectrum)
Notes:
------
- mn are the different spectral moments
- First frequency will be discarded from the analysis. It is assumed to be
the zeroth-frequency.
REFERENCES:
-----------
Kuik, A.J., G.P. Van Vledder, and L.H. Holthuijsen, 1988: A method for the
routine analysis of pitch-and-roll buoy wave data. Journal of Physical
Oceanography, 18(7), pp.1020-1034.
"""
# Get directional properties
dirSpec = np.trapz(spec, freq, axis=0)
# Find peak wave directon
Dp = np.argmax(dirSpec)
Dp = dirs[Dp]
dirDict = dict(Dp=Dp)
# Find mean wave direction (Kuik et al 1988)
a1 = np.trapz(dirSpec * np.cos((270.0 - dirs) * np.pi / 180), dirs)
b1 = np.trapz(dirSpec * np.sin((270.0 - dirs) * np.pi / 180), dirs)
# Mean wave direction in nautical coordinates
Dm = _gangles.wrapto360(270.0 - np.arctan2(b1, a1) * 180.0 / np.pi)
dirDict.update(Dm=Dm)
# Get the parameter from the frequency spectrum
#freqSpec = np.trapz(spec,dirs,axis=-1)
dth = np.abs(dirs[2] - dirs[1])
freqSpec = np.sum(spec, axis=-1) * dth
bp = fspec_bulk_params(freq, freqSpec, IGBand, zeroth=zeroth)
bp.update(dirDict)
return bp
def write_bathy(outfld, lon, lat, depth, spherical=True):
"""
Function to generate bathymetry files to be used as input for WW3 v4.18
PARAMETERS:
-----------
outfld : folder to write the files to
lon : longitudes (or x for cartesian) at every grid point
(I assume they have been meshgridded)
lat : latitudes (or y for cartesian) at every grid point
spherical : True for spherical grids and False for cartesian grids
OUTPUT:
-------
ww3_grid.bot : ASCII file containing the grid depths
ww3_grid.lon : ASCII file containing the longitudes (or x locations)
ww3_grid.lat : ASCII file containing the latitudes (or y locations)
ww3_grid.nc : NetCDF file containing the grid information
ww3_grid.inp : Input file template to be used for the grid preprocessor.
You will need to fix many things it will probably not
work out of the box.
NOTES:
------
I assume that if the grid is in spherical coordiantes the latitude and
longitudes are given in decimal degrees (east). On the other hand if the
grid is cartesian I assume meters.
"""
# Convert longitudes to degrees east
lon = gangles.wrapto360(lon)
# Write ascii files --------------------------------------------------------
# Bathymetry
fid = open(outfld + "ww3_grid.bot", "w")
for aa in range(depth.shape[0]):
for bb in range(depth.shape[1]):
fid.write("%12.4f" % depth[aa, bb])
fid.write("\n")
fid.close()
# Latitude File
fid = open(outfld + "ww3_grid.lat", "w")
for aa in range(lat.shape[0]):
for bb in range(lat.shape[1]):
fid.write("%12.4f" % lat[aa, bb])
fid.write("\n")
fid.close()
# Longitude File
fid = open(outfld + "ww3_grid.lon", "w")
for aa in range(lon.shape[0]):
for bb in range(lon.shape[1]):
fid.write("%12.4f" % lon[aa, bb])
fid.write("\n")
fid.close()
# Write netcdf file --------------------------------------------------------
# Global attributes
nc = netCDF4.Dataset(outfld + "ww3_grid.nc", "w", format="NETCDF4")
nc.Description = "Wavewatch III Bathymetry"
nc.Author = getpass.getuser()
nc.Created = time.ctime()
nc.Owner = "Nearshore Modeling Group (http://ozkan.oce.orst.edu/nmg)"
nc.Software = "Created with Python " + sys.version
nc.NetCDF_Lib = str(netCDF4.getlibversion())
nc.Script = os.path.realpath(__file__)
# Create dimensions
nc.createDimension("xi_rho", lon.shape[1])
nc.createDimension("eta_rho", lon.shape[0])
# Write coordinates and depth to netcdf file
if spherical:
nc.createVariable("lat_rho", "f8", ("eta_rho", "xi_rho"))
nc.variables["lat_rho"].units = "degree_north"
nc.variables["lat_rho"].long_name = "latitude of RHO-points"
nc.variables["lat_rho"][:] = lat
else:
nc.createVariable("y_rho", "f8", ("eta_rho", "xi_rho"))
nc.variables["y_rho"].units = "meter"
nc.variables["y_rho"].long_name = "y location of RHO-points"
nc.variables["y_rho"][:] = lat
# Write longitude
if spherical:
nc.createVariable("lon_rho", "f8", ("eta_rho", "xi_rho"))
nc.variables["lon_rho"].units = "degree_east"
nc.variables["lon_rho"].long_name = "latitude of RHO-points"
nc.variables["lon_rho"][:] = lon
else:
nc.createVariable("x_rho", "f8", ("eta_rho", "xi_rho"))
nc.variables["x_rho"].units = "meter"
nc.variables["x_rho"].long_name = "x location of RHO-points"
nc.variables["x_rho"][:] = lon
# Write water depth
nc.createVariable("h", "f8", ("eta_rho", "xi_rho"))
nc.variables["h"].units = "meter"
nc.variables["h"].long_name = "bathymetry at RHO-points"
nc.variables["h"][:] = depth
# Close NetCDF file
nc.close()
# Write input file for grid preprocessor ----------------------------------
# Create a generic input file
fid = open(outfld + "ww3_grid.inp", "w")
fid.write("$ ----------------------------------------------------------$\n")
fid.write("$ WAVEWATCH III Grid preprocessor input file $\n")
fid.write("$ ----------------------------------------------------------$\n")
fid.write("'Grid Name'\n")
fid.write("$\n")
fid.write("1.1 0.030 40 36 0.\n")
fid.write("$\n")
fid.write("F T T T T T\n")
fid.write("$\n")
fid.write("3600. 600. 3600. 300.\n")
fid.write("$\n")
fid.write("END OF NAMELISTS\n")
fid.write("$\n")
fid.write("$ Define grid --------------------------------------------- $\n")
fid.write("$ Five records containing :\n")
fid.write("$ 1 Type of grid, coordinate system and type of closure: GSTRG, FLAGLL,\n")
fid.write("$ CSTRG. Grid closure can only be applied in spherical coordinates.\n")
fid.write("$ GSTRG : String indicating type of grid :\n")
fid.write("$ " "RECT" " : rectilinear\n")
fid.write("$ " "CURV" " : curvilinear\n")
fid.write("$ FLAGLL : Flag to indicate coordinate system :\n")
fid.write("$ T : Spherical (lon/lat in degrees)\n")
fid.write("$ F : Cartesian (meters)\n")
fid.write("$ CSTRG : String indicating the type of grid index space closure :\n")
fid.write("$ " "NONE" " : No closure is applied\n")
fid.write("$ " "SMPL" " : Simple grid closure : Grid is periodic in the\n")
fid.write("$ : i-index and wraps at i=NX+1. In other words,\n")
fid.write("$ : (NX+1,J) => (1,J). A grid with simple closure\n")
fid.write("$ : may be rectilinear or curvilinear.\n")
fid.write("$ " "TRPL" " : Tripole grid closure : Grid is periodic in the\n")
fid.write("$ : i-index and wraps at i=NX+1 and has closure at\n")
fid.write("$ : j=NY+1. In other words, (NX+1,J<=NY) => (1,J)\n")
fid.write("$ : and (I,NY+1) => (MOD(NX-I+1,NX)+1,NY). Tripole\n")
fid.write("$ : grid closure requires that NX be even. A grid\n")
fid.write("$ : with tripole closure must be curvilinear.\n")
fid.write("$ 2 NX, NY. As the outer grid lines are always defined as land\n")
fid.write("$ points, the minimum size is 3x3.\n")
fid.write("$ 3 Unit number of file with x-coordinate.\n")
fid.write("$ Scale factor and add offset: x <= scale_fac * x_read + add_offset.\n")
fid.write("$ IDLA, IDFM, format for formatted read, FROM and filename.\n")
fid.write("$ 4 Unit number of file with y-coordinate.\n")
fid.write("$ Scale factor and add offset: y <= scale_fac * y_read + add_offset.\n")
fid.write("$ IDLA, IDFM, format for formatted read, FROM and filename.\n")
fid.write("$ 5 Limiting bottom depth (m) to discriminate between land and sea\n")
fid.write("$ points, minimum water depth (m) as allowed in model, unit number\n")
fid.write("$ of file with bottom depths, scale factor for bottom depths (mult.),\n")
fid.write("$ IDLA, IDFM, format for formatted read, FROM and filename.\n")
fid.write("$ IDLA : Layout indicator :\n")
fid.write("$ 1 : Read line-by-line bottom to top.\n")
fid.write("$ 2 : Like 1, single read statement.\n")
fid.write("$ 3 : Read line-by-line top to bottom.\n")
fid.write("$ 4 : Like 3, single read statement.\n")
fid.write("$ IDFM : format indicator :\n")
fid.write("$ 1 : Free format.\n")
fid.write("$ 2 : Fixed format with above format descriptor.\n")
fid.write("$ 3 : Unformatted.\n")
fid.write("$ FROM : file type parameter\n")
fid.write("$ " "UNIT" " : open file by unit number only.\n")
fid.write("$ " "NAME" " : open file by name and assign to unit.\n")
fid.write("$ If the Unit Numbers in above files is 10 then data is read from this file\n")
fid.write("$\n")
# I prefer considering only curvilinear grids.
if spherical:
fid.write("'CURV' T 'NONE'\n")
else:
fid.write("'CURV' F 'NONE'\n")
# Grid size
fid.write(np.str(lon.shape[1]) + " " + np.str(lon.shape[0]) + "\n")
# Path to grid name
fid.write(" 11 1.0 0. 1 1 '(....)' 'NAME' 'ww3_grid.lon'\n")
fid.write(" 12 1.0 0. 1 1 '(....)' 'NAME' 'ww3_grid.lat'\n")
# Bottom bathymetry information
fid.write("$ Bottom bathymetry\n")
fid.write(" -0.5 0.05 13 1 1 '(....)' 'NAME' 'ww3_grid.bot'\n")
fid.write("$ Subgrid Information\n")
fid.write(" 10 1 1 '(....)' 'PART' 'dummy'\n")
# Subgrid information
fid.write("$\n")
fid.write(" 0 0 F\n")
fid.write("$\n")
fid.write(" 0 0 F\n")
fid.write(" 0 0\n")
fid.write("$\n")
fid.write(" 0. 0. 0. 0. 0\n")
fid.write("$ ----------------------------------------------------------$\n")
fid.write("$ End of input file $\n")
fid.write("$ ----------------------------------------------------------$\n")
# Close input file
fid.close()
def write_nc_spec(latitude, longitude, spectrum, frequency, direction, time1, station, fileout=None, spherical=True):
"""
Parameters
----------
latitude : Array of the latitudes of each spectra point [Degree]
Dimension (time,station)
longitude : Array of the longitudes of each spectra point [Degree east]
Dimension (time,station)
spectrum : Variance spectrum [m2/Hz/rad]
Dimensions (time,station,frequency,direction)
frequency : frequency at each bin center [Hz]
direction : direction of propagation of each spectral bin [rad]
time : vector with days from 1900-01-01 00:00:00
station : Array with station names (not longer than 16 characters)
fileout : Output netCDF file
spherical : Flag for metadata. For spherical coordinates True and False
for cartesian coordiantes.
Notes:
------
Direction of where waves are traveling to.
Version:
--------
v0.1 code created:
Gabriel Garcia Medina, Saeed Moghimi, April 2015
"""
# For testing purposes only ------------------------------------------------
# nctest = netCDF4.Dataset('/home/shusin2/shared/nmg/pycodes/'
# 'ww3.basin.201401_spec.nc','r')
# fileout = '/home/shusin2/shared/nmg/pycodes/test2.nc'
# time1 = nctest.variables['time'][:]
# station = nctest.variables['station'][:1]
# latitude = nctest.variables['latitude'][:,:1] * 0.0
# longitude = nctest.variables['longitude'][:,:1] * 0.0+15.0
# frequency = nctest.variables['frequency'][:]
# direction = nctest.variables['direction'][:]
# spectrum = nctest.variables['efth'][:,:1,:,:]
# -------------------------------------------------------------------------
# # Variable dictionary
# varinfo = defaultdict(dict)
# varinfo['frequency']['units'] = 's-1'
# varinfo['frequency']['long_name'] = 'frequency of center band'
# varinfo['frequency']['standard_name'] = 'sea_surface_wave_frequency'
# varinfo['direction']['units'] = 'degree'
# varinfo['direction']['long_name'] = 'sea surface wave to direction'
# varinfo['direction']['standard_name'] = 'sea_surface_wave_to_direction'
# varinfo['latitude']['units'] = 'degree_north'
# varinfo['latitude']['long_name'] = 'latitude'
# varinfo['latitude']['standard_name'] = 'latitude'
# varinfo['longitude']['units'] = 'degree_east'
# varinfo['longitude']['long_name'] = 'longitude'
# varinfo['longitude']['standard_name'] = 'longitude'
# varinfo['efth']['units'] = 'm2 s rad-1'
# varinfo['efth']['long_name'] = ('sea surface wave directional variance' +
# ' spectral density')
# Create netcdf file
if fileout:
nc = netCDF4.Dataset(fileout, "w")
else:
print("Writing NetCDF file " + os.getcwd() + "/ww3_spec_inp.nc")
nc = netCDF4.Dataset("./ww3_spec_inp.nc", "w")
# Create general attributes
nc.Description = "Wavewatch III 4.18 input spectra file"
nc.Author = getpass.getuser()
nc.Created = time.ctime()
nc.Owner = "Nearshore Modeling Group (http://ozkan.oce.orst.edu/nmg)"
nc.Software = "Created with Python " + sys.version
nc.NetCDF_Lib = str(netCDF4.getlibversion())
nc.Script = os.path.realpath(__file__)
# Create dimensions
nc.createDimension("time", 0)
nc.createDimension("frequency", frequency.shape[0])
nc.createDimension("direction", direction.shape[0])
nc.createDimension("string16", 16)
nc.createDimension("station", len(station))
# Write time
nc.createVariable("time", "f8", ("time"))
nc.variables["time"].long_name = "julian day (UT)"
nc.variables["time"].standard_time = "time"
nc.variables["time"].units = "days since 1900-01-01T00:00:00Z"
nc.variables["time"].conventions = "Relative julian days with decimal " + "part (as parts of the day)"
nc.variables["time"][:] = time1
# Write station id and name
nc.createVariable("station", "i8", ("station"))
nc.variables["station"].long_name = "station id"
nc.variables["station"].axis = "X"
nc.variables["station"][:] = np.arange(0, len(station), 1)
# IDK why they do this in WW3 so I am trying to mimic this behaviour
nc.createVariable("string16", "i8", ("string16"))
nc.variables["string16"].long_name = "station_name number of characters"
nc.variables["string16"].axis = "W"
nc.variables["string16"][:] = np.empty((16,), dtype=int)
# Write station names
nc.createVariable("station_name", "S1", ("station", "string16"))
nc.variables["station_name"].long_name = "station name"
nc.variables["station_name"].content = "XW"
nc.variables["station_name"].associates = "station string16"
for aa in range(len(station)):
nc.variables["station_name"][aa] = station[aa]
# Spatial dimensions
nc.createVariable("latitude", "f8", ("time", "station"))
nc.variables["latitude"].long_name = "latitude"
nc.variables["latitude"].standard_name = "latitude"
nc.variables["latitude"].units = "degree_north"
nc.variables["latitude"].valid_min = -90.0
nc.variables["latitude"].valid_max = 90.0
nc.variables["latitude"].content = "TX"
nc.variables["latitude"].associates = "time station"
nc.variables["latitude"][:] = latitude
nc.createVariable("longitude", "f8", ("time", "station"))
nc.variables["longitude"].long_name = "longitude"
nc.variables["longitude"].standard_name = "longitude"
nc.variables["longitude"].units = "degree_east"
nc.variables["longitude"].valid_min = -180.0
nc.variables["longitude"].valid_max = 180.0
nc.variables["longitude"].content = "TX"
nc.variables["longitude"].associates = "time station"
nc.variables["longitude"][:] = gangles.wrapto180(latitude)
# Create frequency and direction vectors
nc.createVariable("frequency", "f8", ("frequency"))
nc.variables["frequency"].long_name = "frequency of center band"
nc.variables["frequency"].standard_name = "sea_surface_wave_frequency"
nc.variables["frequency"].globwave_name = "frequency"
nc.variables["frequency"].units = "s-1"
nc.variables["frequency"].valid_min = 0.0
nc.variables["frequency"].valid_max = 10.0
nc.variables["frequency"].axis = "Y"
nc.variables["frequency"][:] = frequency
nc.createVariable("direction", "f8", ("direction"))
nc.variables["direction"].long_name = "sea surface wave to direction"
nc.variables["direction"].standard_name = "sea_surface_wave_to_direction"
nc.variables["direction"].globwave_name = "direction"
nc.variables["direction"].units = "degree"
nc.variables["direction"].valid_min = 0.0
nc.variables["direction"].valid_max = 360.0
nc.variables["direction"][:] = gangles.wrapto360(direction)
# Write spectral data
nc.createVariable("efth", "f8", ("time", "station", "frequency", "direction"))
nc.variables["efth"].long_name = "sea surface wave directional variance" + " spectral density"
nc.variables["efth"].standard_name = "sea_surface_wave_directional_" + "variance_spectral_density"
nc.variables["efth"].globwave_name = "directional_variance_spectral_density"
nc.variables["efth"].units = "m2 s rad-1"
nc.variables["efth"].scale_factor = 1.0
nc.variables["efth"].add_offset = 0.0
nc.variables["efth"].valid_min = 0.0
nc.variables["efth"].valid_max = 1.0e20
nc.variables["efth"].content = "TXYZ"
nc.variables["efth"].associates = "time station frequency direction"
nc.variables["efth"][:] = spectrum
nc.close()