def setUpContainer(self):
""" Return the test TetrodeSeries to read/write """
self.device = Device(name='device_name')
self.group = ElectrodeGroup(name='electrode_group',
description='description',
location='location',
device=self.device)
self.table = get_electrode_table(
) # manually create a table of electrodes
for i in range(10):
self.table.add_row(x=i,
y=i,
z=i,
imp=np.nan,
location='location',
filtering='filtering',
group=self.group,
group_name='electrode_group')
all_electrodes = DynamicTableRegion(data=list(range(0, 10)),
description='all the electrodes',
name='electrodes',
table=self.table)
data = np.random.rand(100, 3)
tetrode_series = TetrodeSeries(name='name',
description='description',
data=data,
rate=1000.,
electrodes=all_electrodes,
trode_id=1)
return tetrode_series
def make_electrode_table(self):
""" Make an electrode table, electrode group, and device """
self.table = get_electrode_table()
self.dev1 = Device('dev1')
self.group = ElectrodeGroup('tetrode1',
'tetrode description', 'tetrode location', self.dev1)
for i in range(4):
self.table.add_row(x=i, y=2.0, z=3.0, imp=-1.0, location='CA1', filtering='none', group=self.group,
group_name='tetrode1')
def make_electrode_table(self):
self.table = get_electrode_table()
self.dev1 = Device('dev1', 'a test source')
self.group = ElectrodeGroup('tetrode1', 'a test source',
'tetrode description', 'tetrode location', self.dev1)
self.table.add_row(id=1, x=1.0, y=2.0, z=3.0, imp=-1.0, location='CA1', filtering='none', group=self.group,
group_name='tetrode1')
self.table.add_row(id=2, x=1.0, y=2.0, z=3.0, imp=-2.0, location='CA1', filtering='none', group=self.group,
group_name='tetrode1')
self.table.add_row(id=3, x=1.0, y=2.0, z=3.0, imp=-3.0, location='CA1', filtering='none', group=self.group,
group_name='tetrode1')
self.table.add_row(id=4, x=1.0, y=2.0, z=3.0, imp=-4.0, location='CA1', filtering='none', group=self.group,
group_name='tetrode1')