def _parse_expr(text, ldelim="(", rdelim=")"):
"""Parse mathematical expression using PyParsing."""
var = pyparsing.Word(pyparsing.alphas + "_", pyparsing.alphanums + "_")
point = pyparsing.Literal(".")
exp = pyparsing.CaselessLiteral("E")
number = pyparsing.Combine(
pyparsing.Word("+-" + pyparsing.nums, pyparsing.nums)
+ pyparsing.Optional(point + pyparsing.Optional(pyparsing.Word(pyparsing.nums)))
+ pyparsing.Optional(
exp + pyparsing.Word("+-" + pyparsing.nums, pyparsing.nums)
)
)
atom = var | number
oplist = [
(pyparsing.Literal("**"), 2, pyparsing.opAssoc.RIGHT),
(pyparsing.oneOf("+ - ~"), 1, pyparsing.opAssoc.RIGHT),
(pyparsing.oneOf("* / // %"), 2, pyparsing.opAssoc.LEFT),
(pyparsing.oneOf("+ -"), 2, pyparsing.opAssoc.LEFT),
(pyparsing.oneOf("<< >>"), 2, pyparsing.opAssoc.LEFT),
(pyparsing.Literal("&"), 2, pyparsing.opAssoc.LEFT),
(pyparsing.Literal("^"), 2, pyparsing.opAssoc.LEFT),
(pyparsing.Literal("|"), 2, pyparsing.opAssoc.LEFT),
]
# Get functions
expr = pyparsing.infixNotation(
atom, oplist, lpar=pyparsing.Suppress(ldelim), rpar=pyparsing.Suppress(rdelim)
)
return expr.parseString(text)[0]
def get_idl_line_parser():
"""
Based on http://pyparsing.wikispaces.com/file/view/parsePythonValue.py
"""
from pyparsing import \
Word, ZeroOrMore, OneOrMore, Optional, oneOf, StringEnd, Suppress, Group, Combine, \
nums, dblQuotedString, removeQuotes
s = Suppress
int_number = Combine(Optional(oneOf("+ -")) + Word(nums)).setParseAction(lambda tokens: int(tokens[0])).setName("integer")
float_number = \
Combine(Optional(oneOf("+ -")) + Word(nums) + Optional("." +
Optional(Word(nums)) +
Optional(oneOf("e E")+Optional(oneOf("+ -")) +Word(nums)))) \
.setName("float") \
.setParseAction( lambda tokens: float(tokens[0]) )
bounding_box = s('(') + OneOrMore( int_number | s(',') ) + s(')')
bounding_box_with_score = Group(bounding_box + Optional( ( s(":") | s("~") ) + float_number ))
#filename = s('"') + Word(alphanums + "/_.~") + s('"')
quoted = dblQuotedString.setParseAction(removeQuotes)
filename = quoted
idl_line = filename + Optional(s(':') + ZeroOrMore(bounding_box_with_score | s(','))) + ( s(";") | s(".") ) + StringEnd()
#print( filename.parseString("\"left/image_00000004_0.png\"") )
#print( bounding_box.parseString("(221, 183, 261, 289)") )
return idl_line.parseString
def parse(formula):
"""Parse formula string and create abstract syntax tree (AST).
"""
# LTL expression
_ltl_expr = pp.operatorPrecedence(
_proposition,
[
("'", 1, pp.opAssoc.LEFT, ASTUnTempOp),
("!", 1, pp.opAssoc.RIGHT, ASTNot),
(_UnaryTempOps, 1, pp.opAssoc.RIGHT, ASTUnTempOp),
(pp.oneOf("& &&"), 2, pp.opAssoc.LEFT, ASTAnd),
(pp.oneOf("| ||"), 2, pp.opAssoc.LEFT, ASTOr),
(pp.oneOf("xor ^"), 2, pp.opAssoc.LEFT, ASTXor),
("->", 2, pp.opAssoc.RIGHT, ASTImp),
("<->", 2, pp.opAssoc.RIGHT, ASTBiImp),
(pp.oneOf("= == !="), 2, pp.opAssoc.RIGHT, ASTComparator),
(pp.oneOf("U V R"), 2, pp.opAssoc.RIGHT, ASTBiTempOp),
],
)
_ltl_expr.ignore(pp.LineStart() + "--" + pp.restOfLine)
# Increase recursion limit for complex formulae
sys.setrecursionlimit(2000)
try:
return _ltl_expr.parseString(formula, parseAll=True)[0]
except RuntimeError:
raise pp.ParseException("Maximum recursion depth exceeded," "could not parse")
def check_in_parsing(s):
update = (Literal('@') +
Group(OneOrMore(Word(alphas))) +
StringEnd()) | (Literal('@') +
SkipTo(oneOf("4 for For FOR")) +
oneOf('4 for For FOR') +
Word(nums))
#for s in smstestlist:
# print s
try:
u = update.parseString(s)
print u
if len(u) == 2:
u[1] = ' '.join(u[1])
if u[1] in safezones:
print "user in safezone " + u[1]
combo = {'location':u[1],'hours':'24'}
return combo
else:
print "Error: " + u[1] + " is not a safezone!"
return "Error: " + u[1] + " is not a safezone! Syntax for checking in: @ location 4 numberofhours"
else:
print "user at " + u[1] + " for " + u[3] + " hours."
combo = {'location':u[1],'hours':str(u[3])}
return combo
except:
print "Error: Unable to understand!"
def interpretLine(self,l):
#Construct parsing rules
natural=pyparsing.Word(pyparsing.nums)
natural_n=pyparsing.Word(pyparsing.nums)
natural_n.setParseAction(lambda t: int(t[0]))
integer=pyparsing.Optional(pyparsing.oneOf(['-', '+']))+natural
decimal=pyparsing.Word('.',pyparsing.nums)
exponent=pyparsing.Literal('e')+integer
number=pyparsing.Combine(integer+pyparsing.Optional(decimal)+pyparsing.Optional(exponent))
number.setParseAction(lambda t: float(t[0]))
cmd=pyparsing.Group(pyparsing.oneOf(CMDS)+natural_n)
coord=pyparsing.Group(pyparsing.oneOf(AXES)+number)
line=cmd+pyparsing.Group(pyparsing.ZeroOrMore(coord))
if len(l.strip())==0: return False
res=line.parseString(l).asList()
letter=res[0][0]
num=res[0][1]
if letter=='G':
return self.interpretG(num,res[1])
if letter=='M':
return self.interpretM(num)
if letter=='T':
return self.interpretT(num)
def __init__(self):
"""
expop :: '^'
multop :: '*' | '/'
addop :: '+' | '-'
integer :: ['+' | '-'] '0'..'9'+
atom :: PI | E | real | fn '(' expr ')' | '(' expr ')'
factor :: atom [ expop factor ]*
term :: factor [ multop factor ]*
expr :: term [ addop term ]*
"""
point = Literal( "." )
e = CaselessLiteral( "E" )
fnumber = Combine( Word( "+-"+alphanums+"_", alphanums+"_" ) +
Optional( point + Optional( Word( alphanums+"_" ) ) ) +
Optional( e + Word( "+-"+alphanums+"_", alphanums+"_" ) ) )
ident = Word(alphas,alphanums + "_")
plus = Literal( "+" )
minus = Literal( "-" )
mult = Literal( "*" )
div = Literal( "/" )
lpar = Literal( "(" ).suppress()
rpar = Literal( ")" ).suppress()
addop = plus | minus
multop = mult | div
expop = Literal( "^" )
pi = CaselessLiteral( "PI" )
expr = Forward()
function = ident + lpar + expr + ZeroOrMore("," + expr) + rpar
atom = ((Optional(oneOf("- +")) +
(pi|e|function|fnumber).setParseAction(self.pushFirst))
| Optional(oneOf("- +")) + Group(lpar+expr+rpar)
).setParseAction(self.pushUMinus)
# by defining exponentiation as "atom [ ^ factor ]..." instead of
# "atom [ ^ atom ]...", we get right-to-left exponents, instead of left-to-right
# that is, 2^3^2 = 2^(3^2), not (2^3)^2.
factor = Forward()
factor << atom + ZeroOrMore( ( expop + factor ).setParseAction( self.pushFirst ) )
term = factor + ZeroOrMore( ( multop + factor ).setParseAction( self.pushFirst ) )
expr << term + ZeroOrMore( ( addop + term ).setParseAction( self.pushFirst ) )
# addop_term = ( addop + term ).setParseAction( self.pushFirst )
# general_term = term + ZeroOrMore( addop_term ) | OneOrMore( addop_term)
# expr << general_term
self.bnf = expr
# map operator symbols to corresponding arithmetic operations
epsilon = 1e-12
self.opn = { "+" : operator.add,
"-" : operator.sub,
"*" : operator.mul,
"/" : operator.truediv,
"^" : operator.pow }
self.fn = { "sin" : math.sin,
"cos" : math.cos,
"tan" : math.tan,
"abs" : abs,
"trunc" : lambda a: int(a),
"round" : round,
"sgn" : lambda a: abs(a)>epsilon and cmp(a,0) or 0}
def _parseFeatureSignature(sig):
"""This function parses a given feature-signature."""
mal = set()
def _rewriteOne(p):
return ""
def _rewriteTwo(p):
return ""
def _addIdentifier2Mal(p):
mal.add(p[0])
operand = __string | __hexadec | __function | __integer | __identifier.setParseAction(_addIdentifier2Mal)
compoperator = pypa.oneOf("< > <= >= == !=")
calcoperator = pypa.oneOf("+ - * / % & | << >>")
expr = pypa.operatorPrecedence(
operand,
[
("defined", 1, pypa.opAssoc.RIGHT, _rewriteOne),
("!", 1, pypa.opAssoc.RIGHT, _rewriteOne),
(calcoperator, 2, pypa.opAssoc.LEFT, _rewriteTwo),
(compoperator, 2, pypa.opAssoc.LEFT, _rewriteTwo),
("&&", 2, pypa.opAssoc.LEFT, _rewriteTwo),
("||", 2, pypa.opAssoc.LEFT, _rewriteTwo),
],
)
try:
rsig = expr.parseString(sig)[0]
except pypa.ParseException, e:
print("ERROR (parse): cannot parse sig (%s) -- (%s)" % (sig, e.col))
return sig
def __init__(self):
from pyparsing import (ParserElement, StringEnd, LineEnd, Literal,
pythonStyleComment, ZeroOrMore, Suppress,
Optional, Combine, OneOrMore, Regex, oneOf,
QuotedString, Group, ParseException)
ParserElement.setDefaultWhitespaceChars("\t ")
EOF = StringEnd()
EOL = ~EOF + LineEnd() # EOL must not match on EOF
escape = Literal("\\")
comment = pythonStyleComment
junk = ZeroOrMore(comment | EOL).suppress()
## word (i.e: single argument string)
word = Suppress(escape + EOL + Optional(comment)) \
| Combine(OneOrMore( escape.suppress() + Regex(".") |
QuotedString("'", escChar='\\', multiline=True) |
QuotedString('"', escChar='\\', multiline=True) |
Regex("[^ \t\r\n\f\v\\\\$&<>();\|\'\"`]+") |
Suppress(escape + EOL) ))
## redirector (aka bash file redirectors, such as "2>&1" sequences)
fd_src = Regex("[0-2]").setParseAction(lambda t: int(t[0]))
fd_dst = Suppress("&") + fd_src
# "[n]<word" || "[n]<&word" || "[n]<&digit-"
fd_redir = (Optional(fd_src, 0) + Literal("<")
|Optional(fd_src, 1) + Literal(">"))\
+(word | (fd_dst + Optional("-")))
# "&>word" || ">&word"
full_redir = (oneOf("&> >&") + word)\
.setParseAction(lambda t:("&" ,">", t[-1]))
# "<<<word" || "<<[-]word"
here_doc = Regex("<<(<|-?)") + word
# "[n]>>word"
add_to_file = Optional(fd_src | Literal("&"), 1) + \
Literal(">>") + word
# "[n]<>word"
fd_bind = Optional(fd_src, 0) + Literal("<>") + word
redirector = (fd_redir | full_redir | here_doc
| add_to_file | fd_bind)\
.setParseAction(lambda token: tuple(token))
## single command (args/redir list)
command = Group(OneOrMore(redirector | word))
## logical operators (section splits)
semicolon = Suppress(";") + junk
connector = (oneOf("&& || |") + junk) | semicolon
## pipeline, aka logical block of interconnected commands
pipeline = junk + Group(command +
ZeroOrMore(connector + command) +
Optional(semicolon))
# define object attributes
self.LEXER = pipeline.ignore(comment) + EOF
self.parseException = ParseException
def _parse_line():
"""Parse a single data line that may contain string or numerical data.
Float and Int 'words' are converted to their appropriate type.
Exponentiation is supported, as are NaN and Inf."""
digits = Word(nums)
dot = "."
sign = oneOf("+ -")
ee = CaselessLiteral('E') | CaselessLiteral('D')
num_int = ToInteger(Combine( Optional(sign) + digits ))
num_float = ToFloat(Combine( Optional(sign) +
((digits + dot + Optional(digits)) |
(dot + digits)) +
Optional(ee + Optional(sign) + digits)
))
# special case for a float written like "3e5"
mixed_exp = ToFloat(Combine( digits + ee + Optional(sign) + digits ))
nan = ToInf(oneOf("Inf -Inf")) | \
ToNan(oneOf("NaN nan NaN% NaNQ NaNS qNaN sNaN " + \
"1.#SNAN 1.#QNAN -1.#IND"))
# sep = Literal(" ") | Literal("\n")
data = ( OneOrMore( (nan | num_float | mixed_exp | num_int |
Word(printables)) ) )
return data
def __init__(self, ffilter, queue_out):
FuzzQueue.__init__(self, queue_out)
Thread.__init__(self)
self.setName('filter_thread')
self.queue_out = queue_out
if PYPARSING:
element = oneOf("c l w h")
digits = "XB0123456789"
integer = Word( digits )#.setParseAction( self.__convertIntegers )
elementRef = Group(element + oneOf("= != < > >= <=") + integer)
operator = oneOf("and or")
definition = elementRef + ZeroOrMore( operator + elementRef)
nestedformula = Group(Suppress(Optional(Literal("("))) + definition + Suppress(Optional(Literal(")"))))
self.finalformula = nestedformula + ZeroOrMore( operator + nestedformula)
elementRef.setParseAction(self.__compute_element)
nestedformula.setParseAction(self.__compute_formula)
self.finalformula.setParseAction(self.__myreduce)
self.res = None
self.hideparams = ffilter
if "XXX" in self.hideparams['codes']:
self.hideparams['codes'].append("0")
self.baseline = None
def _parse_template(self, options, template):
"""Parse a template string."""
variable_name = Word(alphas + " ")
variable_prefix = Optional(Word(alphas) + ":")
variable = "{" + variable_prefix + variable_name + "}"
variable.setParseAction(self._replace_variable(options))
block_name = oneOf("Title Description PreviousPage NextPage")
block_start = "{block:" + block_name + "}"
block_end = "{/block:" + block_name + "}"
block = block_start + SkipTo(block_end) + block_end
block.setParseAction(self._replace_block(options))
block_type_name = oneOf("Text Photo Panorama Photoset Quote Link Chat Video Audio")
block_type_start = "{block:" + block_type_name + "}"
block_type_end = "{/block:" + block_type_name + "}"
block_type = block_type_start + SkipTo(block_type_end) + block_type_end
block_type.setParseAction(self._replace_block_type(options))
block_cond_name = Word(alphas)
block_cond_start = "{block:If" + Optional("Not") + block_cond_name + "}"
block_cond_end = "{/block:If" + Optional("Not") + block_cond_name + "}"
block_cond = block_cond_start + SkipTo(block_cond_end) + block_cond_end
block_cond.setParseAction(self._replace_block_cond(options))
block_iter_name = oneOf("Posts")
block_iter_start = "{block:" + block_iter_name + "}"
block_iter_end = "{/block:" + block_iter_name + "}"
block_iter = block_iter_start + SkipTo(block_iter_end) + block_iter_end
block_iter.setParseAction(self._replace_block_iter(options))
parser = (block | block_type | block_cond | block_iter | variable)
return parser.transformString(template)
def parser():
global _parser
if _parser is None:
ParserElement.setDefaultWhitespaceChars("")
lbrack, rbrack, lbrace, rbrace, lparen, rparen = map(Literal, "[]{}()")
reMacro = Combine("\\" + oneOf(list("dws")))
escapedChar = ~ reMacro + Combine("\\" + oneOf(list(printables)))
reLiteralChar = "".join(c for c in printables if c not in r"\[]{}().*?+|") + " \t"
reRange = Combine(lbrack + SkipTo(rbrack, ignore=escapedChar) + rbrack)
reLiteral = (escapedChar | oneOf(list(reLiteralChar)))
reDot = Literal(".")
repetition = (
(lbrace + Word(nums).setResultsName("count") + rbrace) |
(lbrace + Word(nums).setResultsName("minCount") + "," + Word(nums).setResultsName("maxCount") + rbrace) |
oneOf(list("*+?"))
)
reRange.setParseAction(handle_range)
reLiteral.setParseAction(handle_literal)
reMacro.setParseAction(handle_macro)
reDot.setParseAction(handle_dot)
reTerm = (reLiteral | reRange | reMacro | reDot)
reExpr = operatorPrecedence(reTerm, [
(repetition, 1, opAssoc.LEFT, handle_repetition),
(None, 2, opAssoc.LEFT, handle_sequence),
(Suppress('|'), 2, opAssoc.LEFT, handle_alternative),
])
_parser = reExpr
return _parser
def defineConditionSyntax(self):
num = Combine(Optional(oneOf("+ -")) + Word(nums) + "." +
Optional(Word(nums)) +
Optional(oneOf("e E")+Optional(oneOf("+ -")) +Word(nums)))
op = oneOf("< == > >= <= !=")
expr = Word(alphanums) + op + num
return expr
def __init__(self):
"""
Setup the Backus Normal Form (BNF) parser logic.
"""
# Set an empty formula attribute
self.formula = None
# Instantiate blank parser for BNF construction
self.bnf = Forward()
# Expression for parenthesis, which are suppressed in the atoms
# after matching.
lpar = Literal(const.LPAR).suppress()
rpar = Literal(const.RPAR).suppress()
# Expression for mathematical constants: Euler number and Pi
e = Keyword(const.EULER)
pi = Keyword(const.PI)
null = Keyword(const.NULL)
_true = Keyword(const.TRUE)
_false = Keyword(const.FALSE)
# Prepare operator expressions
addop = oneOf(const.ADDOP)
multop = oneOf(const.MULTOP)
powop = oneOf(const.POWOP)
unary = reduce(operator.add, (Optional(x) for x in const.UNOP))
# Expression for floating point numbers, allowing for scientific notation.
number = Regex(const.NUMBER)
# Variables are alphanumeric strings that represent keys in the input
# data dictionary.
variable = delimitedList(Word(alphanums), delim=const.VARIABLE_NAME_SEPARATOR, combine=True)
# Functional calls
function = Word(alphanums) + lpar + self.bnf + rpar
# Atom core - a single element is either a math constant,
# a function or a variable.
atom_core = function | pi | e | null | _true | _false | number | variable
# Atom subelement between parenthesis
atom_subelement = lpar + self.bnf.suppress() + rpar
# In atoms, pi and e need to be before the letters for it to be found
atom = (
unary + atom_core.setParseAction(self.push_first) | atom_subelement
).setParseAction(self.push_unary_operator)
# By defining exponentiation as "atom [ ^ factor ]..." instead of
# "atom [ ^ atom ]...", we get right-to-left exponents, instead of
# left-to-right that is, 2^3^2 = 2^(3^2), not (2^3)^2.
factor = Forward()
factor << atom + ZeroOrMore((powop + factor).setParseAction(self.push_first))
term = factor + ZeroOrMore((multop + factor).setParseAction(self.push_first))
self.bnf << term + ZeroOrMore((addop + term).setParseAction(self.push_first))
def _string_to_ast(self, input_string):
""" Parse a smart search string and return it in an AST like form
"""
# simple words
# we need to use a regex to match on words because the regular
# Word(alphanums) will only match on American ASCII alphanums and since
# we try to be Unicode / internationally friendly we need to match much
# much more. Trying to expand a word class to catch it all seems futile
# so we match on everything *except* a few things, like our operators
comp_word = Regex("[^*\s=><~!]+")
word = Regex("[^*\s=><~!]+").setResultsName('word')
# numbers
comp_number = Word(nums)
number = Word(nums).setResultsName('number')
# IPv4 address
ipv4_oct = Regex("((2(5[0-5]|[0-4][0-9])|[01]?[0-9][0-9]?))")
comp_ipv4_address = Combine(ipv4_oct + ('.' + ipv4_oct*3))
ipv4_address = Combine(ipv4_oct + ('.' + ipv4_oct*3)).setResultsName('ipv4_address')
# IPv6 address
ipv6_address = Regex("((([0-9A-Fa-f]{1,4}:){7}([0-9A-Fa-f]{1,4}|:))|(([0-9A-Fa-f]{1,4}:){6}(:[0-9A-Fa-f]{1,4}|((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(([0-9A-Fa-f]{1,4}:){5}(((:[0-9A-Fa-f]{1,4}){1,2})|:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3})|:))|(([0-9A-Fa-f]{1,4}:){4}(((:[0-9A-Fa-f]{1,4}){1,3})|((:[0-9A-Fa-f]{1,4})?:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(([0-9A-Fa-f]{1,4}:){3}(((:[0-9A-Fa-f]{1,4}){1,4})|((:[0-9A-Fa-f]{1,4}){0,2}:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(([0-9A-Fa-f]{1,4}:){2}(((:[0-9A-Fa-f]{1,4}){1,5})|((:[0-9A-Fa-f]{1,4}){0,3}:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(([0-9A-Fa-f]{1,4}:){1}(((:[0-9A-Fa-f]{1,4}){1,6})|((:[0-9A-Fa-f]{1,4}){0,4}:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:))|(:(((:[0-9A-Fa-f]{1,4}){1,7})|((:[0-9A-Fa-f]{1,4}){0,5}:((25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)(\.(25[0-5]|2[0-4]\d|1\d\d|[1-9]?\d)){3}))|:)))(%.+)?").setResultsName('ipv6_address')
ipv6_prefix = Combine(ipv6_address + Regex("/(12[0-8]|1[01][0-9]|[0-9][0-9]?)")).setResultsName('ipv6_prefix')
# VRF RTs of the form number:number
vrf_rt = Combine((comp_ipv4_address | comp_number) + Literal(':') + comp_number).setResultsName('vrf_rt')
# tags
tags = Combine( Literal('#') + comp_word).setResultsName('tag')
# operators for matching
match_op = oneOf(' '.join(self.match_operators)).setResultsName('operator')
boolean_op = oneOf(' '.join(self.boolean_operators)).setResultsName('boolean')
# quoted string
d_quoted_string = QuotedString('"', unquoteResults=True, escChar='\\')
s_quoted_string = QuotedString('\'', unquoteResults=True, escChar='\\')
quoted_string = (s_quoted_string | d_quoted_string).setResultsName('quoted_string')
# expression to match a certain value for an attribute
expression = Group(word + match_op + (quoted_string | vrf_rt | word | number)).setResultsName('expression')
# we work on atoms, which are single quoted strings, match expressions,
# tags, VRF RT or simple words.
# NOTE: Place them in order of most exact match first!
atom = Group(ipv6_prefix | ipv6_address | quoted_string | expression | tags | vrf_rt | boolean_op | word)
enclosed = Forward()
parens = nestedExpr('(', ')', content=enclosed)
enclosed << (
parens | atom
).setResultsName('nested')
content = Forward()
content << (
ZeroOrMore(enclosed)
)
res = content.parseString(input_string)
return res
def expression(self):
from pyparsing import Suppress,Combine,Optional,oneOf,OneOrMore,Word,nums,Group,alphas,alphanums,Literal,SkipTo,empty,lineEnd
cvtInt = lambda toks: int(toks[0])
cvtReal = lambda toks: float(toks[0])
cvtTuple = lambda toks : tuple(toks.asList())
nameJoin = lambda toks : "".join([tok.replace("#","") for tok in toks[0]])
#lambda toks: " ".join([str(t) for t in toks[0]])
# define punctuation as suppressed literals
lparen,rparen,lbrack,rbrack,lbrace,rbrace,colon = map(Suppress,"()[]{}:")
integer = Combine(Optional(oneOf("+ -")) + Word(nums))\
.setName("integer")\
.setParseAction( cvtInt )
real = Combine(Optional(oneOf("+ -")) + Word(nums) + "." +
Optional(Word(nums)) +
Optional(oneOf("e E")+Optional(oneOf("+ -")) +Word(nums))).setName("real").setParseAction( cvtReal )
# TREE DEFINITION
# ((seq2: 0.537243, seq1: 0.000004): 0.255741, seq3: 0.281503);
tree_w_branches = (
OneOrMore(Word("():,."+alphas+nums))+Literal(";")
).setParseAction(lambda tokens: " ".join(tokens[:-1])+";")
# SITE PROBABILITIES
# site Freq Data:
# 1 1 AAA: A(0.978) A(1.000)
site_prob = (
integer.setResultsName("site",listAllMatches=True) +
integer.setResultsName("freq",listAllMatches=True) +
Word(alphas+"-").setResultsName("extant",listAllMatches=True) + colon +
Group(OneOrMore(Group(Word(alphas,exact=1)+lparen+real+rparen))).setResultsName("probability",listAllMatches=True) +
lineEnd
)
# ANCESTRAL SEQUENCES
# seq1 ACC
# node #4 ACC
# Optional # character with node # needs to be joined into a single name
sequence = (
Group(Word(alphanums)+
Optional(Combine(Literal("#")+Word(nums)))).setParseAction(nameJoin).setResultsName("name",listAllMatches=True)+
Word(alphas+"- ").setResultsName("sequence", listAllMatches=True)+lineEnd
)
return (SkipTo(Literal("Ancestral reconstruction by AAML."),include=True).suppress() +
tree_w_branches.setResultsName("tree") +
SkipTo(Literal("site")+Literal("Freq")+Literal("Data:"), include=True,).suppress()+
Group(OneOrMore(site_prob)).setResultsName("sites")+
SkipTo(Literal("List of extant and reconstructed sequences")+Word(nums)+Word(nums), include=True).suppress()+
Group(OneOrMore(sequence)).setResultsName("sequences")+
SkipTo(Literal("for a site."),include=True).suppress()+
Group(OneOrMore(real)).setResultsName("probability")+
empty
)
def _getPattern(self):
arith_expr = Forward()
comp_expr = Forward()
logic_expr = Forward()
LPAR, RPAR, SEMI = map(Suppress, "();")
identifier = Word(alphas+"_", alphanums+"_")
multop = oneOf('* /')
plusop = oneOf('+ -')
expop = Literal( "^" )
compop = oneOf('> < >= <= != ==')
andop = Literal("AND")
orop = Literal("OR")
current_value = Literal( "." )
assign = Literal( "=" )
# notop = Literal('NOT')
function = oneOf(' '.join(self.FUNCTIONS))
function_call = Group(function.setResultsName('fn') + LPAR + Optional(delimitedList(arith_expr)) + RPAR)
aggregate_column = QuotedString(quoteChar='{', endQuoteChar='}')
single_column = QuotedString(quoteChar='[', endQuoteChar=']')
integer = Regex(r"-?\d+")
real = Regex(r"-?\d+\.\d*")
# quotedString enables strings without quotes to pass
operand = \
function_call.setParseAction(self.__evalFunction) | \
aggregate_column.setParseAction(self.__evalAggregateColumn) | \
single_column.setParseAction(self.__evalSingleColumn) | \
((real | integer).setParseAction(self.__evalConstant)) | \
quotedString.setParseAction(self.__evalString).addParseAction(removeQuotes) | \
current_value.setParseAction(self.__evalCurrentValue) | \
identifier.setParseAction(self.__evalString)
arith_expr << operatorPrecedence(operand,
[
(expop, 2, opAssoc.LEFT, self.__expOp),
(multop, 2, opAssoc.LEFT, self.__multOp),
(plusop, 2, opAssoc.LEFT, self.__addOp),
])
# comp_expr = Group(arith_expr + compop + arith_expr)
comp_expr << operatorPrecedence(arith_expr,
[
(compop, 2, opAssoc.LEFT, self.__evalComparisonOp),
])
logic_expr << operatorPrecedence(comp_expr,
[
(andop, 2, opAssoc.LEFT, self.__evalLogicOp),
(orop, 2, opAssoc.LEFT, self.__evalLogicOp)
])
pattern = logic_expr + StringEnd()
return pattern
def getrule():
"""
Using pyparsing, get rule out of a string.
"""
arrow = pp.Literal("==>")
buff = pp.Word(pp.alphas, "".join([pp.alphanums, "_"]))
special_valueLHS = pp.oneOf([x for x in _LHSCONVENTIONS.keys()])
end_buffer = pp.Literal(">")
special_valueRHS = pp.oneOf([x for x in _RHSCONVENTIONS.keys()])
chunk = getchunk()
rule_reader = pp.Group(pp.OneOrMore(pp.Group(special_valueLHS + buff + end_buffer + pp.Group(pp.Optional(chunk))))) + arrow + pp.Group(pp.OneOrMore(pp.Group(special_valueRHS + buff + end_buffer + pp.Group(pp.Optional(chunk)))))
return rule_reader
def _makeGrammar():
"""
Define the simple string selector grammar using PyParsing
"""
#float definition
point = Literal('.')
plusmin = Literal('+') | Literal('-')
number = Word(nums)
integer = Combine(Optional(plusmin) + number)
floatn = Combine(integer + Optional(point + Optional(number)))
#vector definition
lbracket = Literal('(')
rbracket = Literal(')')
comma = Literal(',')
vector = Combine(lbracket + floatn('x') + comma + \
floatn('y') + comma + floatn('z') + rbracket)
#direction definition
simple_dir = oneOf(['X','Y','Z','XY','XZ','YZ'])
direction = simple_dir('simple_dir') | vector('vector_dir')
#CQ type definition
cqtype = oneOf(['Plane','Cylinder','Sphere','Cone','Line','Circle','Arc'],
caseless=True)
cqtype = cqtype.setParseAction(upcaseTokens)
#type operator
type_op = Literal('%')
#direction operator
direction_op = oneOf(['>','<'])
#index definition
ix_number = Group(Optional('-')+Word(nums))
lsqbracket = Literal('[').suppress()
rsqbracket = Literal(']').suppress()
index = lsqbracket + ix_number('index') + rsqbracket
#other operators
other_op = oneOf(['|','#','+','-'])
#named view
named_view = oneOf(['front','back','left','right','top','bottom'])
return direction('only_dir') | \
(type_op('type_op') + cqtype('cq_type')) | \
(direction_op('dir_op') + direction('dir') + Optional(index)) | \
(other_op('other_op') + direction('dir')) | \
named_view('named_view')
def __init__(self, EvaluateVariableChild=None, EvaluateNumberChild=None):
EvaluateVariableChild = EvaluateVariableChild or EvaluateVariable
EvaluateNumberChild = EvaluateNumberChild or EvaluateNumber
# what is a float number
floatNumber = Regex(r'[-]?\d+(\.\d*)?([eE][-+]?\d+)?')
# a variable is a combination of letters, numbers, and underscor
variable = Word(alphanums + "_")
# a sign is plus or minus
signOp = oneOf('+ -')
# an operand is a variable or a floating point number
operand = floatNumber ^ variable
# when a floatNumber is found, parse it with evaluate number
floatNumber.setParseAction(EvaluateNumberChild)
# when a variable is found, parse it with the EvaluateVariableChild
# or EvaluateVariable
variable.setParseAction(EvaluateVariableChild)
# comparisons include lt,le,gt,ge,eq,ne
comparisonOp = oneOf("< <= > >= == !=")
# negation of the boolean is !
notOp = oneOf("!")
# an expression is a either a comparison or
# a NOT operation (where NOT a is essentially (a == False))
comparisonExpression = operatorPrecedence(operand,
[
(comparisonOp,
2,
opAssoc.LEFT,
EvaluateComparison
),
(notOp,
1,
opAssoc.RIGHT,
EvaluateNot
),
])
# boolean logic of AND or OR
boolOp = oneOf("& |")
# a bool expression contains a nested bool expression or a comparison,
# joined with a boolean operation
boolExpression = Forward()
boolPossible = boolExpression | comparisonExpression
self.boolExpression = operatorPrecedence(boolPossible,
[
(boolOp,
2,
opAssoc.RIGHT,
EvaluateOrAnd
),
])
return
def __init__(self):
"""
Create a parser that parse arithmetic expressions. They can
contains variable identifiers or raw numbers. The meaning
for the identifiers is left to the
"""
number = p.Regex(r'\d+(\.\d*)?([eE]\d+)?')
identifier = p.Word(p.alphas)
terminal = identifier | number
self._expr = p.infixNotation(terminal, [
(p.oneOf('* /'), 2, p.opAssoc.LEFT),
(p.oneOf('+ -'), 2, p.opAssoc.LEFT)
]) + p.stringEnd()
def _parse_line(delimiters=' \t'):
"""Parse a single data line that may contain string or numerical data.
Float and Int 'words' are converted to their appropriate type.
Exponentiation is supported, as are NaN and Inf."""
# Somewhat of a hack, but we can only use printables if the delimiter is
# just whitespace. Otherwise, some seprators (like ',' or '=') potentially
# get parsed into the general string text. So, if we have non whitespace
# delimiters, we need to fall back to just alphanums, and then add in any
# missing but important symbols to parse.
if delimiters.isspace():
textchars = printables
else:
textchars = alphanums
symbols = ['.', '/', '+', '*', '^', '(', ')', '[', ']', '=',
':', ';', '?', '%', '&', '!', '#', '|', '<', '>',
'{', '}', '-', '_', '@', '$', '~']
for symbol in symbols:
if symbol not in delimiters:
textchars = textchars + symbol
string_text = Word(textchars)
digits = Word(nums)
dot = "."
sign = oneOf("+ -")
ee = CaselessLiteral('E') | CaselessLiteral('D')
num_int = ToInteger(Combine( Optional(sign) + digits ))
num_float = ToFloat(Combine( Optional(sign) +
((digits + dot + Optional(digits)) |
(dot + digits)) +
Optional(ee + Optional(sign) + digits)
))
# special case for a float written like "3e5"
mixed_exp = ToFloat(Combine( digits + ee + Optional(sign) + digits ))
nan = ToInf(oneOf("Inf -Inf")) | \
ToNan(oneOf("NaN nan NaN% NaNQ NaNS qNaN sNaN " + \
"1.#SNAN 1.#QNAN -1.#IND"))
# sep = Literal(" ") | Literal("\n")
data = ( OneOrMore( (nan | num_float | mixed_exp | num_int |
string_text) ) )
return data
def get_parsing_expr():
S = Suppress
O = Optional
identifier_expression = Combine(oneOf(list(alphas)) + O(Word('_' + alphanums)))
expr = S(Literal('$')) - identifier_expression
expr = expr ^ oneOf(list(alphas))
expr.setName('variable')
def my_parse_action(s, loc, tokens): # @UnusedVariable
name = tokens[0]
return Variable(name)
expr.addParseAction(wrap_parse_action(my_parse_action))
return True, expr
def parse_date_range(x, hyphen=u"- — –", comma=u","):
"""Parse Date Ranges
Parse date ranges like
January 1-5, 1900
January 1-March 1, 1900
January 1 1900 - March 5, 1900
"""
months = {'April': 4,
'August': 8,
'December': 12,
'February': 2,
'January': 1,
'July': 7,
'June': 6,
'March': 3,
'May': 5,
'November': 11,
'October': 10,
'September': 9}
comma = pp.oneOf(comma).suppress()
hyphen = pp.oneOf(hyphen).suppress()
month = pp.oneOf([k for k in months.keys()])
month = month.setResultsName('m')
month.addParseAction(lambda s,l,t: [months[t[0]]])
day = pp.Word(pp.nums).setResultsName('d')
day.addParseAction(lambda s,l,t: [int(t[0])])
year = pp.Word(pp.nums).setResultsName('year')
year.addParseAction(lambda s,l,t: [int(t[0])])
start_date = (month + day + pp.Optional(comma + year)).setResultsName('start')
start_date = (month + day + pp.Optional(comma + year)).setResultsName('start')
end_date = (pp.Optional(month) + day + comma + year).setResultsName('end')
date_range = start_date + pp.Optional(hyphen + end_date)
# date_range needs to be first or one_date will pick up
# start_dates with a year
grammar = date_range
toks = grammar.parseString(x).asDict()
d0 = toks['start']
d1 = toks['end'] if 'end' in toks else d0
if 'year' not in d0:
d0['year'] = d1['year']
if 'm' not in d1:
d1['m'] = d0['m']
d0date = datetime.date(*(d0[x] for x in ('year', 'm', 'd')))
d1date = datetime.date(*(d1[x] for x in ('year', 'm', 'd')))
return (d0date, d1date)
def _parse_filter():
op = pyparsing.oneOf('! & |')
lpar = pyparsing.Literal('(').suppress()
rpar = pyparsing.Literal(')').suppress()
k = pyparsing.Word(pyparsing.alphanums)
v = pyparsing.Word(pyparsing.alphanums + "*@.\\")
rel = pyparsing.oneOf("= ~= >= <=")
expr = pyparsing.Forward()
atom = pyparsing.Group(lpar + op + expr + rpar) \
| pyparsing.Combine(lpar + k + rel + v + rpar)
expr << atom + pyparsing.ZeroOrMore( expr )
return expr
def logicParse(inStr,pm = None):
variable = oneOf('a b c d e f g h i j k l m n o p q r s t u w x y z ' + trueConstants + falseConstants)
expr = operatorPrecedence(variable,
[
(oneOf(notOps), 1, opAssoc.RIGHT),
(oneOf(orOps), 2, opAssoc.LEFT),
(oneOf(andOps), 2, opAssoc.LEFT),
(oneOf(impOps), 2, opAssoc.LEFT)#,
# (oneOf(bimpOps),2,opAssoc.LEFT),
# (oneOf(xorOps), 2, opAssoc.LEFT)
])
parse = expr.parseString(inStr)[0]
if pm == None: return parseToStatement(parse, propMap())
else: return parseToStatement(parse, pm)
def parser():
global _parser
if _parser is None:
ParserElement.setDefaultWhitespaceChars("")
lbrack = Literal("[")
rbrack = Literal("]")
lbrace = Literal("{")
rbrace = Literal("}")
lparen = Literal("(")
rparen = Literal(")")
reMacro = Suppress("\\") + oneOf(list("dwsZ"))
escapedChar = ~reMacro + Combine("\\" + oneOf(list(printables)))
reLiteralChar = "".join(c for c in string.printable if c not in r"\[]{}().*?+|")
reRange = Combine(lbrack.suppress() + SkipTo(rbrack,ignore=escapedChar) + rbrack.suppress())
reLiteral = ( escapedChar | oneOf(list(reLiteralChar)) )
reDot = Literal(".")
repetition = (
( lbrace + Word(nums).setResultsName("count") + rbrace ) |
( lbrace + Word(nums).setResultsName("minCount")+","+ Word(nums).setResultsName("maxCount") + rbrace ) |
oneOf(list("*+?"))
)
reExpr = Forward()
reGroup = (lparen.suppress() +
Optional(Literal("?").suppress() + oneOf(list(":P"))).setResultsName("option") +
reExpr.setResultsName("expr") +
rparen.suppress())
reTerm = ( reLiteral | reRange | reMacro | reDot | reGroup )
reExpr << operatorPrecedence( reTerm,
[
(repetition, 1, opAssoc.LEFT, create(Repetition)),
(None, 2, opAssoc.LEFT, create(Sequence)),
(Suppress('|'), 2, opAssoc.LEFT, create(Alternation)),
]
)
reGroup.setParseAction(create(Group))
reRange.setParseAction(create(Range))
reLiteral.setParseAction(create(Character))
reMacro.setParseAction(create(Macro))
reDot.setParseAction(create(Dot))
_parser = reExpr
return _parser
def __init__(self):
self.select_stmt = Forward().setName("select statement")
self.itemName = MatchFirst(Keyword("itemName()")).setParseAction(self.ItemName)
self.count = MatchFirst(Keyword("count(*)")).setParseAction(self.Count)
self.identifier = ((~keyword + Word(alphas, alphanums+"_")) | QuotedString("`"))
self.column_name = (self.itemName | self.identifier.copy())
self.table_name = self.identifier.copy()
self.function_name = self.identifier.copy()
# expression
self.expr = Forward().setName("expression")
self.integer = Regex(r"[+-]?\d+")
self.string_literal = QuotedString("'")
self.literal_value = self.string_literal
self.expr_term = (
self.itemName |
self.function_name + LPAR + Optional(delimitedList(self.expr)) + RPAR |
self.literal_value.setParseAction(self.Literal) |
NULL.setParseAction(self.Null) |
self.identifier.setParseAction(self.Identifier) |
(EVERY + LPAR + self.identifier.setParseAction(self.Identifier) + RPAR).setParseAction(self.EveryIdentifier) |
(LPAR + Optional(delimitedList(self.literal_value.setParseAction(self.Literal))) + RPAR).setParseAction(self.ValueList)
)
self.expr << (operatorPrecedence(self.expr_term,
[
(NOT, UNARY, opAssoc.RIGHT, self.BoolNot),
(oneOf('< <= > >='), BINARY, opAssoc.LEFT, self.BinaryComparisonOperator),
(oneOf('= == != <>') | Group(IS + NOT) | IS | IN | LIKE, BINARY, opAssoc.LEFT, self.BinaryComparisonOperator),
((BETWEEN,AND), TERNARY, opAssoc.LEFT, self.BetweenXAndY),
(OR, BINARY, opAssoc.LEFT, self.BoolOr),
(AND, BINARY, opAssoc.LEFT, self.BoolAnd),
(INTERSECTION, BINARY, opAssoc.LEFT, self.Intersection),
])).setParseAction(self.dont_allow_non_comparing_terms)
self.ordering_term = (self.itemName | self.identifier) + Optional(ASC | DESC)
self.single_source = self.table_name("table")
self.result_column = Group("*" | self.count | delimitedList(self.column_name))("columns")
self.select_core = (SELECT + self.result_column + FROM + self.single_source + Optional(WHERE + self.expr("where_expr")))
self.select_stmt << (self.select_core +
Optional(ORDER + BY + Group(delimitedList(self.ordering_term))).setParseAction(self.OrderByTerms)("order_by_terms") +
Optional(LIMIT + self.integer)("limit_terms"))
def parseKip(self, fin):
# parser for .kip files
operator = oneOf("ADD SUB MUL DIV NONE")
integer = Word(nums)
lbrack = Suppress('[')
rbrack = Suppress(']')
cage = Group( operator("oper") + integer("value") +\
lbrack + OneOrMore(integer)("cells") + rbrack +\
integer("color") )
cages = OneOrMore(cage)("cages")
update = Group( integer("coords") + integer("answer") +integer("candidates") )
annal = "checkpoint" ^ update
history = "History" + OneOrMore(annal)("history")
dimension ="dim" + integer("dim")
solution = "Solution" + OneOrMore(integer)("soln")
answer = "Answers" + OneOrMore(integer)("answer")
candidates = "Candidates" + OneOrMore(integer)("candidates")
time = "Time" + integer("time")
puzzle = dimension + cages + solution + answer + candidates + history + time
puzzle.ignore(pythonStyleComment)
return puzzle.parseFile(fin, parseAll = True)
def lookup(values, name=None):
"""
Creates the grammar for a Lookup (L) field, accepting only values from a
list.
Like in the Alphanumeric field, the result will be stripped of all heading
and trailing whitespaces.
:param values: values allowed
:param name: name for the field
:return: grammar for the lookup field
"""
if name is None:
name = 'Lookup Field'
if values is None:
raise ValueError('The values can no be None')
# TODO: This should not be needed, it is just a patch. Fix this.
try:
v = values.asList()
values = v
except AttributeError:
values = values
# Only the specified values are allowed
lookup_field = pp.oneOf(values)
lookup_field.setName(name)
lookup_field.setParseAction(lambda s: s[0].strip())
lookup_field.leaveWhitespace()
return lookup_field
(Minor updates by Paul McGuire, June, 2012)
'''
from pyparsing import Word, ZeroOrMore, printables, Suppress, OneOrMore, Group, \
LineEnd, Optional, White, originalTextFor, hexnums, nums, Combine, Literal, Keyword, \
cStyleComment, Regex, Forward, MatchFirst, And, srange, oneOf, alphas, alphanums, \
delimitedList
# http://www.antlr.org/grammar/ANTLR/ANTLRv3.g
# Tokens
EOL = Suppress(LineEnd()) # $
singleTextString = originalTextFor(
ZeroOrMore(~EOL + (White(" \t") | Word(printables)))).leaveWhitespace()
XDIGIT = hexnums
INT = Word(nums)
ESC = Literal('\\') + (oneOf(list(r'nrtbf\">' + "'")) |
('u' + Word(hexnums, exact=4))
| Word(printables, exact=1))
LITERAL_CHAR = ESC | ~(Literal("'") | Literal('\\')) + Word(printables,
exact=1)
CHAR_LITERAL = Suppress("'") + LITERAL_CHAR + Suppress("'")
STRING_LITERAL = Suppress("'") + Combine(
OneOrMore(LITERAL_CHAR)) + Suppress("'")
DOUBLE_QUOTE_STRING_LITERAL = '"' + ZeroOrMore(LITERAL_CHAR) + '"'
DOUBLE_ANGLE_STRING_LITERAL = '<<' + ZeroOrMore(Word(printables,
exact=1)) + '>>'
TOKEN_REF = Word(alphas.upper(), alphanums + '_')
RULE_REF = Word(alphas.lower(), alphanums + '_')
ACTION_ESC = (Suppress("\\") + Suppress("'")) | Suppress('\\"') | Suppress(
'\\') + (~(Literal("'") | Literal('"')) + Word(printables, exact=1))
ACTION_CHAR_LITERAL = Suppress("'") + (
date = Group(year + slash + month + slash + day + hour + colon + minute +
colon + second).setResultsName("date")
minecraft_username = Word(alphanums + "_", min=3, max=16)
buyer = minecraft_username.setResultsName("buyer")
#This is fast but it'll break if NullCase makes an admin shop that
#contains ' at ' in its name
seller = SkipTo(' at ').setResultsName("seller")
item_amount = number.setResultsName("item_amount")
#Breaks if an item contains a ' for '
item = SkipTo(' for ').setResultsName("item")
cash_amount = number.setResultsName("cash_amount")
world = (oneOf("world_nether world_the_end world")).setResultsName("world")
coordinates = Group(
delimitedList(signed_integer)).setResultsName("coordinates")
buy_transaction = date + buyer + Suppress(
"bought") + item_amount + item + Suppress("for") + cash_amount + Suppress(
"from") + seller + Suppress("at") + Suppress("[") + world + Suppress(
"]") + coordinates
#Small test
#print(buy_transaction.parseString('2018/09/01 00:05:58 NullCase bought 3 White Wool for 25.00 from LightsChaos at [world] 29, 69, 38'))
The AtomicTermSymbol class, representing an atomic term symbol, with
methods for parsing a string into quantum numbers and labels, creating
an HTML representation of the term symbol, etc.
"""
import pyparsing as pp
from .state import State, StateParseError
from .utils import parse_fraction, float_to_fraction
atom_L_symbols = ('S', 'P', 'D', 'F', 'G', 'H', 'I', 'K', 'L', 'M', 'N', 'O',
'Q', 'R', 'T', 'U', 'V', 'W', 'X', 'Y', 'Z')
integer = pp.Word(pp.nums)
atom_Smult = integer.setResultsName('Smult')
atom_Lletter = pp.oneOf(atom_L_symbols).setResultsName('Lletter')
atom_Jstr = (integer + pp.Optional(pp.Suppress('/') + '2') +
pp.StringEnd()).setResultsName('Jstr')
atom_parity = pp.Literal('o').setResultsName('parity')
atom_term = (atom_Smult + atom_Lletter + pp.Optional(atom_parity) +
pp.Optional(pp.Suppress('_') + atom_Jstr) + pp.StringEnd())
class AtomicTermSymbolError(StateParseError):
pass
class AtomicTermSymbol(State):
multiple_allowed = False
def header_parser():
identifier = Regex("[a-zA-Z_][a-zA-Z0-9_\$]*")
comment = cppStyleComment.suppress()
size = Group(
Optional( Suppress('[') + SkipTo(']') + Suppress(']') )
)
# Params
end_param = Literal(',') + 'parameter' | Literal(')') + '('
ptype = Optional( oneOf('integer real realtime time') )
# NOTE: this isn't completely right, good enough for parsing valid Verilog
param = Group(
'parameter' + ptype + size + identifier +
Suppress('=') + SkipTo(end_param)
)
list_of_params = Group(
Suppress('#(') + delimitedList( param ) + Suppress(')')
)
# Ports
dir_ = Optional( oneOf('input output inout') )
type_ = Optional( oneOf('wire reg') )
port = Group(
dir_ + type_ + size + identifier
)
list_of_ports = Group(
Suppress('(') + delimitedList( port ) + Suppress(')')
)
# Module
module_identifier = identifier
module = Group(
Suppress('module') +
module_identifier('module_name') +
Optional( list_of_params('params') ) +
Optional( list_of_ports ('ports' ) ) +
Suppress(';') +
SkipTo('endmodule') + Suppress('endmodule')
)
# Debug
#print
#module_identifier.setParseAction( dbg('modname') )#.setDebug()
#param .setParseAction( dbg('param') )#.setDebug()
#port .setParseAction( dbg('port' ) )#.setDebug()
#module .setParseAction( dbg('module', 1) )#.setDebug()
file_ = SkipTo('module', ignore=comment ).suppress() + \
OneOrMore( module ).ignore( comment ) + \
SkipTo( StringEnd() ).suppress()
return file_
def __init__(self):
"""
expop :: '^'
multop :: '*' | '/'
addop :: '+' | '-'
integer :: ['+' | '-'] '0'..'9'+
atom :: PI | E | real | fn '(' expr ')' | '(' expr ')'
factor :: atom [ expop factor ]*
term :: factor [ multop factor ]*
expr :: term [ addop term ]*
"""
self.kwargs = {}
self.expr_stack = []
self.assignment_stack = []
self.expression_string = None
self.results = None
self.container = None
self.opn = {
"+": self.add,
"-": self.subtract,
"*": self.multiply,
"/": self.divide,
"^": self.pow,
}
self.fn = {"exp": self.exp, "clamp": self.clamp}
self.conditionals = ["==", "!=", ">", ">=", "<", "<="]
# use CaselessKeyword for e and pi, to avoid accidentally matching
# functions that start with 'e' or 'pi' (such as 'exp'); Keyword
# and CaselessKeyword only match whole words
e = CaselessKeyword("E")
pi = CaselessKeyword("PI")
# fnumber = Combine(Word("+-"+nums, nums) +
# Optional("." + Optional(Word(nums))) +
# Optional(e + Word("+-"+nums, nums)))
# or use provided pyparsing_common.number, but convert back to str:
# fnumber = ppc.number().addParseAction(lambda t: str(t[0]))
fnumber = Regex(r"[+-]?\d+(?:\.\d*)?(?:[eE][+-]?\d+)?")
ident = Word(alphas, alphanums + "_$")
plus, minus, mult, div = map(Literal, "+-*/")
lpar, rpar = map(Suppress, "()")
addop = plus | minus
multop = mult | div
expop = Literal("^")
comparison_op = oneOf(" ".join(self.conditionals))
qm, colon = map(Literal, "?:")
assignment = Literal("=")
assignment_op = ident + assignment + ~FollowedBy(assignment)
expr = Forward()
expr_list = delimitedList(Group(expr))
# add parse action that replaces the function identifier with a (name, number of args) tuple
fn_call = (ident + lpar - Group(expr_list) + rpar).setParseAction(
lambda t: t.insert(0, (t.pop(0), len(t[0])))
)
atom = (
addop[...]
+ (
(fn_call | pi | e | fnumber | ident).setParseAction(self.push_first)
| Group(lpar + expr + rpar)
)
).setParseAction(self.push_unary_minus)
# by defining exponentiation as "atom [ ^ factor ]..." instead of "atom [ ^ atom ]...", we get right-to-left
# exponents, instead of left-to-right that is, 2^3^2 = 2^(3^2), not (2^3)^2.
factor = Forward()
factor <<= atom + (expop + factor).setParseAction(self.push_first)[...]
term = factor + (multop + factor).setParseAction(self.push_first)[...]
expr <<= term + (addop + term).setParseAction(self.push_first)[...]
comparison = expr + (comparison_op + expr).setParseAction(self.push_first)[...]
ternary = (
comparison + (qm + expr + colon + expr).setParseAction(self.push_first)[...]
)
# self.bnf = ternary
assignment = Optional(assignment_op).setParseAction(self.push_last) + ternary
self.bnf = assignment
else:
self.val = tokens
def __str__(self):
return "<Not({})>".format(self.val)
def __iter__(self):
return iter((self.val,))
def to_expr(self):
return pyeda.Not(self.val.to_expr())
columnRval = pyparsing_common.number.copy() | quotedString()
condition = Group(column + oneOf(operators, caseless=True) + columnRval)
boolExpr = infixNotation(condition,
[
(not_, 1, opAssoc.RIGHT, BoolNot,),
(and_, 2, opAssoc.LEFT, BoolAnd,),
(or_, 2, opAssoc.LEFT, BoolOr,),
])
condition.setParseAction(Cond)
def str_to_query_tokens(query: str):
return boolExpr.parseString(query).asList()[0]
def __call__(self, s):
return self.eval(s)
def __getstate__(self):
return self.name, self.grammar, self.calculator
def __setstate__(self, state):
self.name, self.grammar, self.calculator = state
arithOpTable = [{
'token': '^',
'assoc': 'right'
}, {
'token': pp.oneOf('+ -'),
'arity': 1
},
pp.oneOf('* /'),
pp.oneOf('+ -'), {
'token': pp.oneOf('== != < > <= >='),
'action': CompareAction
}]
logicOpTable = [{
'token': '~',
'arity': 1,
'action': UnaryOperatorAction
}, {
'token': '&',
'action': BinaryOperatorAction
}, {
import pyparsing
variable_names = pyparsing.Combine(
pyparsing.Literal('$') + pyparsing.Word(pyparsing.alphanums + '_'))
#integer = pyparsing.Word(pyparsing.nums)
integer = pyparsing.pyparsing_common.signed_integer
double = pyparsing.Combine(
pyparsing.Word(pyparsing.nums) + '.' + pyparsing.Word(pyparsing.nums))
parser = pyparsing.operatorPrecedence(
variable_names | double | integer,
[('**', 2, pyparsing.opAssoc.RIGHT), ('-', 1, pyparsing.opAssoc.RIGHT),
(pyparsing.oneOf('* / // %'), 2, pyparsing.opAssoc.LEFT),
(pyparsing.oneOf('+ -'), 2, pyparsing.opAssoc.LEFT),
(pyparsing.oneOf('> >= < <= == !='), 2, pyparsing.opAssoc.LEFT),
('not', 1, pyparsing.opAssoc.RIGHT), ('and', 2, pyparsing.opAssoc.LEFT),
('or', 2, pyparsing.opAssoc.LEFT)])
examples = [
"5 * 10 ** -2",
"5 * 10 * -2",
"5 * 10 ** (-2)",
"5 * -10 ** 2",
"5 * (-10) ** 2",
"5 and not 8",
"5 and -8",
"1 ** -2",
"-1 ** 2",
test = instring[ loc:loc+self.matchLen ]
if test.upper() == self.match:
return loc+self.matchLen, test
#~ raise ParseException( instring, loc, self.errmsg )
exc = self.myException
exc.loc = loc
exc.pstr = instring
raise exc
def Sequence(token):
""" A sequence of the token"""
return OneOrMore(token+maybeComma)
digit_sequence = Word(nums)
sign = oneOf("+ -")
def convertToFloat(s, loc, toks):
try:
return float(toks[0])
except:
raise ParseException(loc, "invalid float format %s"%toks[0])
exponent = CaselessLiteral("e")+Optional(sign)+Word(nums)
#note that almost all these fields are optional,
#and this can match almost anything. We rely on Pythons built-in
#float() function to clear out invalid values - loosely matching like this
#speeds up parsing quite a lot
floatingPointConstant = Combine(
Optional(sign) +
def logicterm(constant=DIGIT, variable=IDEN, function=IDEN, lambdaterm=False):
# f(x,y...) | const | x
if lambdaterm:
function = function | lambdaterm(variable, lambdaKeyword='lambda')
t = pp.Forward()
t <<= (function('function') + LPAREN + pp.delimitedList(t)('args') + RPAREN).setParseAction(FunctionAction) | (constant | variable).setParseAction(AtomAction)
return t
def lambdaterm(variable=IDEN, lambdaKeyword='lambda'):
# lambda variable: expression
t = pp.Forward()
t <<= pp.Suppress(lambdaKeyword) + pp.delimitedList(variable)('args') + (t | logicterm(constant=DIGIT, variable=IDEN, function=None))('term')
t.setParseAction(LambdaAction)
return t
integer = pp.pyparsing_common.signed_integer
varname = pp.pyparsing_common.identifier
arithOplist = [('-', 1, pp.opAssoc.RIGHT),
(pp.oneOf('* /'), 2, pp.opAssoc.LEFT),
(pp.oneOf('+ -'), 2, pp.opAssoc.LEFT)]
def func(EXP):
return pp.Group('<' + EXP + pp.Suppress(',') + EXP +'>')| pp.Group('||' + EXP + '||') | pp.Group('|' + EXP + '|') | pp.Group(IDEN + '(' + pp.delimitedList(EXP) + ')')
baseExpr = integer | varname
EXP = mixedExpression(baseExpr, func=func, opList=arithOplist)
a = EXP.parseString('5*5+<4,5>')
print(a)
def detectChemicalType(formula):
"""detectChemicalType: utility routine for detecting chemical type
Arguments
----------
formula : text version of formula
Returns
-------
type: string "element"|"ionic"|"covalent"|"acid"|"water"
"""
verbose = False
#if verbose: print(f"detect formula:{formula}")
if formula in ['H2O', 'HOH']:
return "water"
if formula == 'O2':
return "oxygen"
integer = pp.Word(pp.nums)
element = pp.StringStart() + pp.oneOf(element_symbols) + pp.Optional(
integer) + pp.StringEnd()
try:
parts = element.parseString(formula)
return "element"
except pp.ParseException:
pass
ammonium_formulas = [ammonium_formula, '(' + ammonium_formula + ')']
cation = pp.StringStart() + pp.oneOf(ionic_metal_symbols)
try:
parts = cation.parseString(formula)
return "ionic"
except pp.ParseException:
pass
hydrocarbon_formula = [ammonium_formula, '(' + ammonium_formula + ')']
integer_or_hco = pp.Word("HC", "CHO1234567890")
hydrocarbon = pp.StringStart() + integer_or_hco + pp.StringEnd()
if formula in ["CO2", "CO"]: return "covalent"
if formula in ["H2CO3"]: return "ionic"
try:
parts = hydrocarbon.parseString(formula)
return "hydrocarbon"
except pp.ParseException:
pass
ammonium_formulas = [ammonium_formula, '(' + ammonium_formula + ')']
polycation = pp.StringStart() + pp.oneOf(ammonium_formulas)
try:
parts = polycation.parseString(formula)
return "ionic"
except pp.ParseException:
pass
acid = pp.StringStart() + pp.Char('H') + pp.NotAny(pp.oneOf('e o f g s'))
try:
parts = acid.parseString(formula)
return "acid"
except pp.ParseException:
pass
return "covalent"
def create_bnf(term_descs):
"""term_descs .. list of TermParse objects
(sign, term_name, term_arg_names), where sign can be real or complex
multiplier"""
lc = ['+'] # Linear combination context.
equal = Literal("=").setParseAction(rhs(lc))
zero = Literal("0").suppress()
point = Literal(".")
e = CaselessLiteral("E")
inumber = Word("+-" + nums, nums)
fnumber = Combine(
Word("+-" + nums, nums) + Optional(point + Optional(Word(nums))) +
Optional(e + Word("+-" + nums, nums)))
number = fnumber + Optional(Literal('j'), default='')
add_op = oneOf('+ -')
number_expr = Forward()
number_expr << Optional(add_op) + ZeroOrMore('(') + number \
+ ZeroOrMore(add_op + number_expr) \
+ ZeroOrMore(')')
ident = Word(alphas, alphanums + "_")
integral = Combine((Literal('i') + Word(alphanums)) | Literal('i')
| Literal('a') | Word(nums))("integral")
history = Optional('[' + inumber + ']', default='')("history")
variable = Combine(Word(alphas, alphanums + '._') + history)
derivative = Combine(Literal('d') + variable \
+ Literal('/') + Literal('dt'))
trace = Combine(Literal('tr') + '(' + Optional(ident + Literal(',')) +
variable + ')',
adjacent=False)
generalized_var = derivative | trace | variable
args = Group(delimitedList(generalized_var))
flag = Literal('a')
term = ((Optional(Literal('+') | Literal('-'), default='+')("sign")
^ Optional(number_expr + Literal('*').suppress(),
default=['1.0', ''])("mul")) +
Combine(
ident("name") +
Optional("." +
(integral + "." + ident("region") + "." + flag("flag")
| integral + "." + ident("region")
| ident("region"))))("term_desc") + "(" +
Optional(args, default=[''])("args") + ")")
term.setParseAction(collect_term(term_descs, lc))
rhs1 = equal + OneOrMore(term)
rhs2 = equal + zero
equation = StringStart() + OneOrMore(term) \
+ Optional(rhs1 | rhs2) + StringEnd()
## term.setDebug()
return equation
)
ParserElement.enablePackrat() # faster
ParserElement.setDefaultWhitespaceChars(" \t") # use significant newlines
# Data types
# ------------------------------------------------------------------------------------------
# integer
integer = Word(nums + "+-") # integer
# floating point
fp = Combine(Word(nums + "+-") + Literal(".") + Word(nums))
# fortran real
exp = oneOf("E e D d")
real = Combine(fp("base") + exp.setParseAction(lambda x: "e") + integer("exponent"))
# C type
char = Word(printables)
# Decks of data
# ------------------------------------------------------------------------------------------
# prelim
data_type = oneOf("R I C")
name_of_deck = LineStart() + OneOrMore(
Word(printables), stopOn=White(min=3) + data_type
).setParseAction(" ".join)
# single value decks
ival_deck = name_of_deck("key") + Literal("I")("type") + integer("value")
def __init__(self):
""" A program is a list of statements.
Statements can be 'set' or 'select' statements.
"""
statement = Forward()
SELECT, FROM, WHERE, SET, AS = map(CaselessKeyword, "select from where set as".split())
ident = Word( "$" + alphas, alphanums + "_$" ).setName("identifier")
columnName = delimitedList(ident, ".", combine=True).setName("column name")
columnNameList = Group( delimitedList(columnName))
tableName = delimitedList(ident, ".", combine=True).setName("column name")
tableNameList = Group(delimitedList(tableName))
SEMI,COLON,LPAR,RPAR,LBRACE,RBRACE,LBRACK,RBRACK,DOT,COMMA,EQ = map(Literal,";:(){}[].,=")
arrow = Literal ("->")
t_expr = Group(ident + LPAR + Word("$" + alphas, alphanums + "_$") + RPAR + ZeroOrMore(LineEnd())).setName("t_expr") | \
Word(alphas, alphanums + "_$") + ZeroOrMore(LineEnd())
t_expr_chain = t_expr + ZeroOrMore(arrow + t_expr)
whereExpression = Forward()
and_, or_, in_ = map(CaselessKeyword, "and or in".split())
binop = oneOf("= != < > >= <= eq ne lt le gt ge", caseless=True)
realNum = ppc.real()
intNum = ppc.signed_integer()
columnRval = realNum | intNum | quotedString | columnName # need to add support for alg expressions
whereCondition = Group(
( columnName + binop + (columnRval | Word(printables) ) ) |
( columnName + in_ + "(" + delimitedList( columnRval ) + ")" ) |
( columnName + in_ + "(" + statement + ")" ) |
( "(" + whereExpression + ")" )
)
whereExpression << whereCondition + ZeroOrMore( ( and_ | or_ ) + whereExpression )
'''
Assignment for handoff.
'''
setExpression = Forward ()
setStatement = Group(
( ident ) |
( quotedString("json_path") + AS + ident("name") ) |
( "(" + setExpression + ")" )
)
setExpression << setStatement + ZeroOrMore( ( and_ | or_ ) + setExpression )
optWhite = ZeroOrMore(LineEnd() | White())
""" Define the statement grammar. """
statement <<= (
Group(
Group(SELECT + t_expr_chain)("concepts") + optWhite +
Group(FROM + tableNameList) + optWhite +
Group(Optional(WHERE + whereExpression("where"), "")) + optWhite +
Group(Optional(SET + setExpression("set"), ""))("select")
)
|
Group(
SET + (columnName + EQ + ( quotedString | intNum | realNum ))
)("set")
)("statement")
""" Make a program a series of statements. """
self.program = statement + ZeroOrMore(statement)
""" Make rest-of-line comments. """
comment = "--" + restOfLine
self.program.ignore (comment)
LBRACE, RBRACE, LBRACK, RBRACK, LPAR, RPAR, EQ, SEMI = map(
Suppress, "{}[]()=;")
kwds = """message required optional repeated enum extensions extends extend
to package service rpc returns true false option import"""
for kw in kwds.split():
exec("{0}_ = Keyword('{1}')".format(kw.upper(), kw))
messageBody = Forward()
messageDefn = MESSAGE_ - ident("messageId") + LBRACE + messageBody(
"body") + RBRACE
typespec = oneOf("""double float int32 int64 uint32 uint64 sint32 sint64
fixed32 fixed64 sfixed32 sfixed64 bool string bytes"""
) | ident
rvalue = integer | TRUE_ | FALSE_ | ident
fieldDirective = LBRACK + Group(ident + EQ + rvalue) + RBRACK
fieldDefn = ((REQUIRED_ | OPTIONAL_ | REPEATED_)("fieldQualifier") -
typespec("typespec") + ident("ident") + EQ + integer("fieldint") +
ZeroOrMore(fieldDirective) + SEMI)
# enumDefn ::= 'enum' ident '{' { ident '=' integer ';' }* '}'
enumDefn = ENUM_("typespec") - ident('name') + LBRACE + Dict(
ZeroOrMore(Group(ident + EQ + integer + SEMI)))('values') + RBRACE
# extensionsDefn ::= 'extensions' integer 'to' integer ';'
extensionsDefn = EXTENSIONS_ - integer + TO_ + integer + SEMI
# messageExtension ::= 'extend' ident '{' messageBody '}'
CITATION_TYPE,
CITATION_TYPES,
CITATION_TYPE_PUBMED,
EVIDENCE,
)
from ..utils import valid_date
__all__ = ['ControlParser']
log = logging.getLogger(__name__)
set_tag = Suppress(BEL_KEYWORD_SET)
unset_tag = Suppress(BEL_KEYWORD_UNSET)
unset_all = Suppress(BEL_KEYWORD_ALL)
supporting_text_tags = oneOf([BEL_KEYWORD_EVIDENCE, BEL_KEYWORD_SUPPORT])
set_statement_group_stub = And(
[Suppress(BEL_KEYWORD_STATEMENT_GROUP),
Suppress('='),
qid('group')])
set_citation_stub = And([
Suppress(BEL_KEYWORD_CITATION),
Suppress('='),
delimited_quoted_list('values')
])
set_evidence_stub = And(
[Suppress(supporting_text_tags),
Suppress('='),
quote('value')])
def create_bnf( stack ):
point = Literal( "." )
comma = Literal( "," )
e = CaselessLiteral( "E" )
inumber = Word( nums )
fnumber = Combine( Word( "+-"+nums, nums ) +
Optional( point + Optional( Word( nums ) ) ) +
Optional( e + Word( "+-"+nums, nums ) ) )
_of = Literal( 'of' )
_in = Literal( 'in' )
_by = Literal( 'by' )
_copy = Literal( 'copy' )
_mn = Literal( '-n' ).setParseAction( replace( 'OA_SubN' ) )
_me = Literal( '-e' ).setParseAction( replace( 'OA_SubE' ) )
_pn = Literal( '+n' ).setParseAction( replace( 'OA_AddN' ) )
_pe = Literal( '+e' ).setParseAction( replace( 'OA_AddE' ) )
_inn = Literal( '*n' ).setParseAction( replace( 'OA_IntersectN' ) )
_ine = Literal( '*e' ).setParseAction( replace( 'OA_IntersectE' ) )
regop = (_mn | _me | _pn | _pe | _inn | _ine)
lpar = Literal( "(" ).suppress()
rpar = Literal( ")" ).suppress()
_all = Literal( 'all' ).setParseAction( replace( 'KW_All' ) )
node = Literal( 'node' )
nodes = Literal( 'nodes' )
element = Literal( 'element' )
elements = Literal( 'elements' )
group = Literal( 'group' )
surface = Literal( 'surface' )
variable = Word( 'xyz', max = 1 ) | Literal( 'domain' )
any_var = Word( alphas + '_', alphanums + '_' ) | fnumber
ident = Word(alphas, alphanums + "_")
function = Word( alphas, alphanums + '_' )
function = Group( function ).setParseAction( join_tokens )
region = Combine( Literal( 'r.' ) + Word( alphas, '_' + alphas + nums ) )
region = Group( Optional( _copy, default = 'nocopy' ) + region )
region.setParseAction( replace( 'KW_Region', keep = True ) )
coor = oneOf( 'x y z' )
boolop = oneOf( '& |' )
relop = oneOf( '< > <= >= != ==' )
bool_term = ZeroOrMore( '(' ) + (coor | fnumber ) + relop + (coor | fnumber)\
+ ZeroOrMore( ')' )
relation = Forward()
relation << ZeroOrMore( '(' )\
+ bool_term + ZeroOrMore( boolop + relation )\
+ ZeroOrMore( ')' )
relation = Group( relation ).setParseAction( join_tokens )
nos = Group( nodes + _of + surface ).setParseAction( replace( 'E_NOS' ) )
nir = Group( nodes + _in + relation ).setParseAction( \
replace( 'E_NIR', keep = True ) )
nbf = Group( nodes + _by + function ).setParseAction( \
replace( 'E_NBF', keep = True ) )
ebf = Group( elements + _by + function ).setParseAction( \
replace( 'E_EBF', keep = True ) )
eog = Group( elements + _of + group + Word( nums ) ).setParseAction( \
replace( 'E_EOG', keep = True ) )
nog = Group( nodes + _of + group + (Word(nums) | ident) ).setParseAction( \
replace( 'E_NOG', keep = True ) )
onir = Group( node + _in + region ).setParseAction( \
replace_with_region( 'E_ONIR', 2 ) )
ni = Group( node + delimitedList( inumber ) ).setParseAction( \
replace( 'E_NI', keep = True ) )
ei1 = Group( element + delimitedList( inumber ) ).setParseAction( \
replace( 'E_EI1', keep = True ) )
etuple = lpar.suppress() + inumber + comma.suppress() \
+ inumber + rpar.suppress()
ei2 = Group( element + delimitedList( etuple ) ).setParseAction( \
replace( 'E_EI2', keep = True ) )
region_expression = Forward()
atom1 = (_all | region | ni | onir | nos | nir | nbf
| ei1 | ei2 | ebf | eog | nog)
atom1.setParseAction( to_stack( stack ) )
atom2 = (lpar + region_expression.suppress() + rpar)
atom = (atom1 | atom2)
aux = (regop + region_expression)
aux.setParseAction( to_stack( stack ) )
region_expression << atom + ZeroOrMore( aux )
region_expression = StringStart() + region_expression + StringEnd()
# region.set_debug()
# relation.set_debug()
# region_expression.set_debug()
return region_expression
:type tokens: list
"""
return float(tokens[0])
# Suppressed Literals
LPAREN = Literal("(").suppress()
RPAREN = Literal(")").suppress()
COLON = Literal(":").suppress()
EXP_START = Literal("[").suppress()
EXP_END = Literal("]").suppress()
# Grammar Tokens
# DataFrame Accessor
INTEGER = Combine(Optional(oneOf("+ -")) + Word(nums))\
.setParseAction(parse_num)
REAL = Combine(Optional(oneOf("+ -")) + Word(nums) + "." +
Optional(Word(nums)) +
Optional(oneOf("e E") + Optional(oneOf("+ -")) + Word(nums)))\
.setParseAction(parse_num)
# Generic Identifier
IDENTIFIER = Word(alphas + '_', alphanums + '_')
# Python Like Function Name
FUNC_NAME = delimitedList(IDENTIFIER, delim=".", combine=True)
# Exponentiation operators
EXPONENTIATION_OPS = "**"
# Unary Operators
UNARY_OPS = oneOf("+ -")
# Multiplication/Division Operators
.. seealso::
- BEL 2.0 specification on `cellular location (2.2.4) <http://openbel.org/language/version_2.0/bel_specification_version_2.0.html#_cellular_location>`_
- PyBEL module :py:class:`pybel.parser.modifiers.LocationParser`
"""
from pyparsing import Group, Suppress, oneOf
from ..baseparser import BaseParser
from ..parse_identifier import IdentifierParser
from ..utils import nest
from ...constants import LOCATION
__all__ = [
'location_tag',
'LocationParser',
]
location_tag = Suppress(oneOf(['loc', 'location']))
class LocationParser(BaseParser):
def __init__(self, identifier_parser=None):
"""
:param IdentifierParser identifier_parser: An identifier parser for checking the 3P and 5P partners
"""
identifier_parser = identifier_parser if identifier_parser is not None else IdentifierParser(
)
super(LocationParser, self).__init__(
Group(location_tag + nest(identifier_parser.language))(LOCATION))
Rec. ITU-T X.680 (08/2015)
12.5 Module references
Page 17
'''
modulereference = typereference
'''
Rec. ITU-T X.680 (08/2015)
12.6 Comments
Page 17
'''
# Missing comment for '/*' and '*/'
comment = hyphen_minus + \
hyphen_minus + \
ZeroOrMore(Word(allowed_character_set, allowed_character_set)) + \
oneOf(hyphen_minus+ \
hyphen_minus,
newline)
'''
Rec. ITU-T X.680 (08/2015)
12.7 Empty lexical item
Page 18
'''
empty = Empty().suppress()
'''
Rec. ITU-T X.680 (08/2015)
12.8 Numbers
Page 18
'''
# number = Word(digits.replace('0', ''), digits, min=2) | \
# Word(digits, max=1)
number = Regex(r'\d+')
":": "substring",
":=": "iexact",
":<": "lt",
":<=": "lte",
":>": "gt",
":>=": "gte",
}
# Parsing grammar
AND = CaselessKeyword("AND")
OR = Optional(CaselessKeyword("OR"))
NOT = CaselessKeyword("NOT")
# Search operator
OPERATOR = oneOf(OPERATOR_MAP.keys())
# Field name, explicitely exlude URL like patters
FIELD = Regex(r"""(?!http|ftp|https|mailto)[a-zA-Z_]+""")
# Match token
WORD = Regex(r"""[^ \(\)]([^ '"]*[^ '"\)])?""")
DATE = Word("0123456789:.-T")
# Date range
RANGE = "[" + DATE + "to" + DATE + "]"
# Match value
REGEX_STRING = "r" + RawQuotedString('"')
STRING = REGEX_STRING | RawQuotedString("'") | RawQuotedString('"') | WORD
#!/usr/bin/env python3
from pyparsing import Combine, Group, Literal, oneOf, OneOrMore, Optional, \
Token, White, Word, ZeroOrMore, \
alphas, alphas8bit, alphanums, hexnums, nums, printables
from testbin.parser import parseurl
octet = [chr(i) for i in range(0, 256)]
OCTET = oneOf(octet)
ctl = [chr(i) for i in range(0, 32)]
ctl.append(chr(127))
CTL = oneOf(ctl)
CR = "\r"
LF = "\n"
CRLF = CR + LF
SP = ' '
HTAB = '\t'
WSP = Literal(HTAB) ^ Literal(SP)
WSP.leaveWhitespace()
LWS = Optional(ZeroOrMore(WSP) + CRLF) + OneOrMore(WSP)
LWS.leaveWhitespace()
SWS = Optional(LWS)
SWS.leaveWhitespace()
ICAP_Version = Literal("ICAP/1.0")
Token = Word(alphas)
Extension_Method = Token
Method = Literal("REQMOD") ^ Literal("RESPMOD") ^ Literal("OPTIONS") ^ \
Extension_Method
Scheme = Literal("icap")
Host = parseurl.host
Port = parseurl.port
class DpkgParser(text_parser.PyparsingSingleLineTextParser):
"""Parser for Debian package manager log (dpkg.log) files."""
NAME = 'dpkg'
DATA_FORMAT = 'Debian package manager log (dpkg.log) file'
_ENCODING = 'utf-8'
_DPKG_STARTUP = 'startup'
_DPKG_STATUS = 'status'
_DPKG_CONFFILE = 'conffile'
_DPKG_ACTIONS = [
'install', 'upgrade', 'configure', 'trigproc', 'disappear', 'remove',
'purge'
]
_DPKG_STARTUP_TYPES = ['archives', 'packages']
_DPKG_STARTUP_COMMANDS = [
'unpack', 'install', 'configure', 'triggers-only', 'remove', 'purge'
]
_DPKG_CONFFILE_DECISIONS = ['install', 'keep']
_DPKG_STARTUP_BODY = pyparsing.Combine(
pyparsing.Literal(_DPKG_STARTUP) +
pyparsing.oneOf(_DPKG_STARTUP_TYPES) +
pyparsing.oneOf(_DPKG_STARTUP_COMMANDS),
joinString=' ',
adjacent=False)
_DPKG_STATUS_BODY = pyparsing.Combine(
pyparsing.Literal(_DPKG_STATUS) +
pyparsing.Word(pyparsing.printables) +
pyparsing.Word(pyparsing.printables) +
pyparsing.Word(pyparsing.printables),
joinString=' ',
adjacent=False)
_DPKG_ACTION_BODY = pyparsing.Combine(
pyparsing.oneOf(_DPKG_ACTIONS) + pyparsing.Word(pyparsing.printables) +
pyparsing.Word(pyparsing.printables) +
pyparsing.Word(pyparsing.printables),
joinString=' ',
adjacent=False)
_DPKG_CONFFILE_BODY = pyparsing.Combine(
pyparsing.Literal(_DPKG_CONFFILE) +
pyparsing.Word(pyparsing.printables) +
pyparsing.oneOf(_DPKG_CONFFILE_DECISIONS),
joinString=' ',
adjacent=False)
_DPKG_LOG_LINE = (
text_parser.PyparsingConstants.DATE_TIME.setResultsName('date_time') +
pyparsing.MatchFirst([
_DPKG_STARTUP_BODY, _DPKG_STATUS_BODY, _DPKG_ACTION_BODY,
_DPKG_CONFFILE_BODY
]).setResultsName('body'))
LINE_STRUCTURES = [('line', _DPKG_LOG_LINE)]
def ParseRecord(self, parser_mediator, key, structure):
"""Parses a structure of tokens derived from a line of a text file.
Args:
parser_mediator (ParserMediator): parser mediator.
key (str): identifier of the structure of tokens.
structure (pyparsing.ParseResults): structure of tokens derived from
a line of a text file.
Raises:
ParseError: when the structure type is unknown.
"""
if key != 'line':
raise errors.ParseError(
'Unable to parse record, unknown structure: {0:s}'.format(key))
time_elements_tuple = self._GetValueFromStructure(
structure, 'date_time')
try:
date_time = dfdatetime_time_elements.TimeElements(
time_elements_tuple=time_elements_tuple)
except ValueError:
parser_mediator.ProduceExtractionWarning(
'invalid date time value: {0!s}'.format(time_elements_tuple))
return
body_text = self._GetValueFromStructure(structure, 'body')
if not body_text:
parser_mediator.ProduceExtractionWarning('missing body text')
return
event_data = DpkgEventData()
event_data.body = body_text
event = time_events.DateTimeValuesEvent(
date_time, definitions.TIME_DESCRIPTION_ADDED)
parser_mediator.ProduceEventWithEventData(event, event_data)
def VerifyStructure(self, parser_mediator, line):
"""Verifies if a line from a text file is in the expected format.
Args:
parser_mediator (ParserMediator): parser mediator.
line (str): line from a text file.
Returns:
bool: True if the line is in the expected format, False if not.
"""
try:
structure = self._DPKG_LOG_LINE.parseString(line)
except pyparsing.ParseException as exception:
logger.debug(
'Unable to parse Debian dpkg.log file with error: {0!s}'.
format(exception))
return False
return 'date_time' in structure and 'body' in structure
def parse(s):
equals = pp.Suppress('=')
colon = pp.Suppress(':')
comment = pp.Suppress(
pp.Optional(pp.Literal('#') - pp.ZeroOrMore(pp.Word(pp.printables))))
# set up multiple grammars
# single str value
strkeys = pp.oneOf(' '.join(strkeylist), caseless=True)
string = pp.Word(pp.alphanums + punctuation)
strgram = strkeys - equals - string - comment
# single num value
numkeys = pp.oneOf(' '.join(numkeys_int + numkeys_float), caseless=True)
point = pp.Literal(".")
e = pp.CaselessLiteral("E")
num = pp.Combine(
pp.Word("+-" + pp.nums, pp.nums) +
pp.Optional(point + pp.Optional(pp.Word(pp.nums))) +
pp.Optional(e + pp.Word("+-" + pp.nums, pp.nums)))
numgram = numkeys - equals - num - comment
# variable definition grammar
strnumkeys = pp.oneOf(' '.join(var_def_keys + b_var_def_keys),
caseless=True)
bng_parameter = pp.Word(pp.alphas, pp.alphanums + "_")
varnums = bng_parameter - num - num - pp.Optional(pp.Word("ubBU"))
strnumgram = strnumkeys - equals - varnums - comment
# multiple string value grammar
multstrkey = pp.oneOf(' '.join(multstrkeys), caseless=True)
multstrgram = multstrkey - equals - pp.OneOrMore(string)
# var and logvar alt grammar (only one number given)
varkeys = pp.oneOf(' '.join(var_def_keys_1or2nums), caseless=True)
vargram = varkeys - equals - bng_parameter - num - pp.Optional(
num) - comment
# multiple num value
multnumkey = pp.oneOf(' '.join(multnumkeys), caseless=True)
multnumgram = multnumkey - equals - pp.OneOrMore(num) - comment
# model-data mapping grammar
mdmkey = pp.CaselessLiteral("model")
nonetoken = pp.Suppress(pp.CaselessLiteral("none"))
model_file = pp.Regex(".*?\.(bngl|xml)")
exp_file = pp.Regex(".*?\.(exp|con)")
mdmgram = mdmkey - equals - model_file - colon - (
pp.delimitedList(exp_file) ^ nonetoken) - comment
# normalization mapping grammar
normkey = pp.CaselessLiteral("normalization")
anything = pp.Word(pp.alphanums + punctuation + ' ')
normgram = normkey - equals - anything # The set of legal grammars for normalization is too complicated,
# Will handle with separate code.
# Grammar for dictionary-like specification of simulation actions
# We are intentionally over-permissive here, because the Action class will be able to give more helpful error
# messages than a failed parse.
dict_entry = pp.Word(
pp.alphas) - colon - pp.Word(pp.alphanums + punctuation_safe)
dict_key = pp.oneOf(' '.join(dictkeys), caseless=True)
dictgram = dict_key - equals - pp.delimitedList(dict_entry) - comment
# mutant model grammar
mutkey = pp.CaselessLiteral('mutant')
mut_op = pp.Group(
pp.Word(pp.alphas + '_', pp.alphanums + '_') - pp.oneOf('+ - * / =') -
num)
mutgram = mutkey - equals - string - string - pp.Group(pp.OneOrMore(mut_op)) - \
pp.Group(colon - (pp.delimitedList(exp_file) ^ nonetoken)) - comment
# check each grammar and output somewhat legible error message
line = (mdmgram | strgram | numgram | strnumgram | multnumgram
| multstrgram | vargram | normgram | dictgram
| mutgram).parseString(s, parseAll=True).asList()
return line
def __init__(self, *studies):
# import all parameter names
self.studies = studies
if len(self.studies) == 0:
raise ConfigurationError(
'Parser instance takes at least one Study instance as argument.'
)
self.names = []
for study in studies:
self.names.extend(study.observationModel.parameterNames)
try:
# OnlineStudy: loop over all transition models
for names in study.hyperParameterNames:
self.names.extend(names)
except AttributeError:
try:
# Hyper/ChangepointStudy: only one transition model
self.names.extend(study.flatHyperParameterNames)
except AttributeError:
pass
if not len(np.unique(self.names)) == len(self.names):
raise ConfigurationError(
'Specified study objects contain duplicate parameter names.')
# define arithmetic operators
self.arith = {
'+': operator.add,
'-': operator.sub,
'*': operator.mul,
'/': operator.truediv,
'^': operator.pow
}
# initialize symbols for parsing
parameter = pp.oneOf(self.names)
point = pp.Literal(".")
e = pp.CaselessLiteral("E")
fnumber = pp.Combine(
pp.Word("+-" + pp.nums, pp.nums) +
pp.Optional(point + pp.Optional(pp.Word(pp.nums))) +
pp.Optional(e + pp.Word("+-" + pp.nums, pp.nums)))
# initialize list of all numpy functions, remove functions that collide with (hyper-)parameter names
self.functions = dir(np)
for name in self.names:
try:
self.functions.remove(name)
print(
'! WARNING: Numpy function "{}" will not be available in parser, as it collides with '
'(hyper-)parameter names.'.format(name))
except ValueError:
pass
# initialize operators for parsing
funcop = pp.oneOf(self.functions)
atop = pp.Literal('@')
expop = pp.Literal('^')
signop = pp.oneOf('+ -')
multop = pp.oneOf('* /')
plusop = pp.oneOf('+ -')
# minimal symbol
atom = (parameter | fnumber)
# expression based on operator precedence
self.expr = pp.operatorPrecedence(atom, [(funcop, 1, pp.opAssoc.RIGHT),
(atop, 2, pp.opAssoc.LEFT),
(expop, 2, pp.opAssoc.RIGHT),
(signop, 1, pp.opAssoc.RIGHT),
(multop, 2, pp.opAssoc.LEFT),
(plusop, 2, pp.opAssoc.LEFT)])
EQ, LPAR, RPAR, COLON, COMMA = map(Suppress, "=():,")
EXCL, DOLLAR = map(Literal, "!$")
sheetRef = Word(alphas, alphanums) | QuotedString("'", escQuote="''")
colRef = Optional(DOLLAR) + Word(alphas, max=2)
rowRef = Optional(DOLLAR) + Word(nums)
cellRef = Combine(
Group(Optional(sheetRef + EXCL)("sheet") + colRef("col") + rowRef("row")))
cellRange = (Group(cellRef("start") + COLON + cellRef("end"))("range")
| cellRef
| Word(alphas, alphanums))
expr = Forward()
COMPARISON_OP = oneOf("< = > >= <= != <>")
condExpr = expr + COMPARISON_OP + expr
ifFunc = (CaselessKeyword("if") - LPAR + Group(condExpr)("condition") + COMMA +
Group(expr)("if_true") + COMMA + Group(expr)("if_false") + RPAR)
def stat_function(name):
return Group(
CaselessKeyword(name) + Group(LPAR + delimitedList(expr) + RPAR))
sumFunc = stat_function("sum")
minFunc = stat_function("min")
maxFunc = stat_function("max")
aveFunc = stat_function("ave")
def _parseFeatureSignatureAndRewrite(sig):
"""This function parses a given feature-signature and rewrites
the signature according to the given __pt mapping.
"""
# this dictionary holds all transformations of operators from
# the origin (cpp) to the compare (language)
# e.g. in cpp && stands for the 'and'-operator.
# the equivalent in maple (which is used for comparison)
# is '&and'
# if no equivalence can be found a name rewriting is done
# e.g. 'defined'
__pt = {
#'defined' : 'defined_',
'defined': '',
'!': '¬',
'&&': '&and',
'||': '&or',
'<': '<',
'>': '>',
'<=': '<=',
'>=': '>=',
'==': '=',
'!=': '!=',
'*': '*', # needs rewriting with parenthesis
'/': '/',
'%': '', # needs rewriting a % b => modp(a, b)
'+': '+',
'-': '-',
'&': '', # needs rewriting a & b => BitAnd(a, b)
'|': '', # needs rewriting a | b => BitOr(a, b)
'>>': '>>', # needs rewriting a >> b => a / (2^b)
'<<': '<<', # needs rewriting a << b => a * (2^b)
}
def _rewriteOne(param):
"""This function returns each one parameter function
representation for maple."""
if param[0][0] == '!':
ret = __pt[param[0][0]] + '(' + str(param[0][1]) + ')'
if param[0][0] == 'defined':
ret = __pt[param[0][0]] + str(param[0][1])
return ret
def _rewriteTwo(param):
"""This function returns each two parameter function
representation for maple."""
# rewriting rules
if param[0][1] == '%':
return 'modp(' + param[0][0] + ',' + param[0][2] + ')'
ret = ' ' + __pt[param[0][1]] + ' '
ret = '(' + ret.join(map(str, param[0][0::2])) + ')'
if param[0][1] in ['<', '>', '<=', '>=', '!=', '==']:
ret = '(true &and ' + ret + ')'
return ret
operand = __string | __hexadec | __integer | \
__function | __identifier
compoperator = pypa.oneOf('< > <= >= == !=')
calcoperator = pypa.oneOf('+ - * / & | << >> %')
expr = pypa.operatorPrecedence(operand, [
('defined', 1, pypa.opAssoc.RIGHT, _rewriteOne),
('!', 1, pypa.opAssoc.RIGHT, _rewriteOne),
(calcoperator, 2, pypa.opAssoc.LEFT, _rewriteTwo),
(compoperator, 2, pypa.opAssoc.LEFT, _rewriteTwo),
('&&', 2, pypa.opAssoc.LEFT, _rewriteTwo),
('||', 2, pypa.opAssoc.LEFT, _rewriteTwo),
])
try:
rsig = expr.parseString(sig)[0]
except pypa.ParseException, e:
print('ERROR (parse): cannot parse sig (%s) -- (%s)' %
(sig, e.col))
return sig
from pyparsing import infixNotation, oneOf, opAssoc, pyparsing_common, ParseResults
expression_strs = open("inputs/day18.txt", 'r').read().splitlines()
parser_a = infixNotation(pyparsing_common.integer,
[(oneOf('* +'), 2, opAssoc.LEFT)])
parser_b = infixNotation(pyparsing_common.integer,
[(oneOf('+'), 2, opAssoc.LEFT),
(oneOf("*"), 2, opAssoc.LEFT)])
def apply(expression):
result = 0
op = "+"
for i in expression:
if isinstance(i, ParseResults):
result = eval(f"{result}{op}{apply(i)}")
elif isinstance(i, str):
op = i
else:
result = eval(f"{result}{op}{i}")
return result
print(
f"part a: {sum(apply(i) for i in (parser_a.parseString(e) for e in expression_strs))}"
)
print(
f"part b: {sum(apply(i) for i in (parser_b.parseString(e) for e in expression_strs))}"
Sup = P.Suppress
# commands
# commands
# commands
botname = P.Forward()
def setBotName(newname):
botname << CL(newname)
identifier = P.Word(P.alphas + "_",
P.alphanums + "_").setResultsName('identifier')
command_leader = L(".")
hail = (botname + P.oneOf(": ,")) | (botname + P.White())
command_args = P.restOfLine.setResultsName('command_args')
command = (
P.StringStart() + Sup(command_leader | hail) +
identifier.setResultsName('command_identifier') +
Sup(P.Optional(P.White())) +
command_args.setResultsName('command_args')).setResultsName('command')
_test_commands = [
(".hello", "['hello', '']"),
(".foo bar", "['foo', 'bar']"),
(". foo", "['foo', '']"),
("..foo", P.ParseException),
("TestBot:foo", "['foo', '']"),
("tesTBot,foo", "['foo', '']"),
class TestCommonHelperExpressions(PyparsingExpressionTestCase):
tests = [
PpTestSpec(
desc="A comma-delimited list of words",
expr=pp.delimitedList(pp.Word(pp.alphas)),
text="this, that, blah,foo, bar",
expected_list=["this", "that", "blah", "foo", "bar"],
),
PpTestSpec(
desc="A counted array of words",
expr=pp.Group(pp.countedArray(pp.Word("ab")))[...],
text="2 aaa bbb 0 3 abab bbaa abbab",
expected_list=[["aaa", "bbb"], [], ["abab", "bbaa", "abbab"]],
),
PpTestSpec(
desc="skipping comments with ignore",
expr=(
pp.pyparsing_common.identifier("lhs")
+ "="
+ pp.pyparsing_common.fnumber("rhs")
).ignore(pp.cppStyleComment),
text="abc_100 = /* value to be tested */ 3.1416",
expected_list=["abc_100", "=", 3.1416],
expected_dict={"lhs": "abc_100", "rhs": 3.1416},
),
PpTestSpec(
desc="some pre-defined expressions in pyparsing_common, and building a dotted identifier with delimted_list",
expr=(
pp.pyparsing_common.number("id_num")
+ pp.delimitedList(pp.pyparsing_common.identifier, ".", combine=True)(
"name"
)
+ pp.pyparsing_common.ipv4_address("ip_address")
),
text="1001 www.google.com 192.168.10.199",
expected_list=[1001, "www.google.com", "192.168.10.199"],
expected_dict={
"id_num": 1001,
"name": "www.google.com",
"ip_address": "192.168.10.199",
},
),
PpTestSpec(
desc="using oneOf (shortcut for Literal('a') | Literal('b') | Literal('c'))",
expr=pp.oneOf("a b c")[...],
text="a b a b b a c c a b b",
expected_list=["a", "b", "a", "b", "b", "a", "c", "c", "a", "b", "b"],
),
PpTestSpec(
desc="parsing nested parentheses",
expr=pp.nestedExpr(),
text="(a b (c) d (e f g ()))",
expected_list=[["a", "b", ["c"], "d", ["e", "f", "g", []]]],
),
PpTestSpec(
desc="parsing nested braces",
expr=(
pp.Keyword("if")
+ pp.nestedExpr()("condition")
+ pp.nestedExpr("{", "}")("body")
),
text='if ((x == y) || !z) {printf("{}");}',
expected_list=[
"if",
[["x", "==", "y"], "||", "!z"],
["printf(", '"{}"', ");"],
],
expected_dict={
"condition": [[["x", "==", "y"], "||", "!z"]],
"body": [["printf(", '"{}"', ");"]],
},
),
]
