def test_cluster_mixed_cohesion_wo_prot(self):
distances = CondensedMatrix([1., 2., 3., 4., 5., 6., 7., 8., 9., 10.])
clusters_1 = [
Cluster(None, elements=[0, 1]),
Cluster(None, elements=[2]),
Cluster(None, elements=[3, 4])
]
clusters_2 = [
Cluster(None, elements=[0, 2, 4]),
Cluster(None, elements=[1, 3])
]
sep_calctor = SeparationCalculator()
self.assertEqual(
sep_calctor._SeparationCalculator__between_cluster_distance(
clusters_1[0], clusters_1[1], distances), 7.0)
self.assertEqual(
sep_calctor._SeparationCalculator__between_cluster_distance(
clusters_1[0], clusters_1[2], distances), 20.0)
self.assertEqual(
sep_calctor._SeparationCalculator__between_cluster_distance(
clusters_1[1], clusters_1[2], distances), 17.0)
self.assertEqual(
sep_calctor._SeparationCalculator__between_cluster_distance(
clusters_2[0], clusters_2[1], distances), 34.0)
def test_cluster_mixed_cohesion_wo_prot(self):
distances = CondensedMatrix( [ 1., 2., 3., 4.,
5., 6., 7.,
8., 9.,
10.])
clusters_1 = [Cluster(None, elements=[0,1]),
Cluster(None, elements=[2] ),
Cluster(None, elements=[3,4])]
clusters_2 = [Cluster(None, elements=[0,2,4]),
Cluster(None, elements=[1,3])]
sep_calctor = SeparationCalculator()
self.assertEqual( sep_calctor._SeparationCalculator__between_cluster_distance(clusters_1[0],clusters_1[1],distances),7.0)
self.assertEqual( sep_calctor._SeparationCalculator__between_cluster_distance(clusters_1[0],clusters_1[2],distances),20.0)
self.assertEqual( sep_calctor._SeparationCalculator__between_cluster_distance(clusters_1[1],clusters_1[2],distances),17.0)
self.assertEqual( sep_calctor._SeparationCalculator__between_cluster_distance(clusters_2[0],clusters_2[1],distances),34.0)
