def check_getArrayRegion(roi, name, testResize=True, transpose=False):
initState = roi.getState()
#win = pg.GraphicsLayoutWidget()
win = pg.GraphicsView()
win.show()
resizeWindow(win, 200, 400)
# Don't use Qt's layouts for testing--these generate unpredictable results.
#vb1 = win.addViewBox()
#win.nextRow()
#vb2 = win.addViewBox()
# Instead, place the viewboxes manually
vb1 = pg.ViewBox()
win.scene().addItem(vb1)
vb1.setPos(6, 6)
vb1.resize(188, 191)
vb2 = pg.ViewBox()
win.scene().addItem(vb2)
vb2.setPos(6, 203)
vb2.resize(188, 191)
img1 = pg.ImageItem(border='w')
img2 = pg.ImageItem(border='w')
vb1.addItem(img1)
vb2.addItem(img2)
np.random.seed(0)
data = np.random.normal(size=(7, 30, 31, 5))
data[0, :, :, :] += 10
data[:, 1, :, :] += 10
data[:, :, 2, :] += 10
data[:, :, :, 3] += 10
if transpose:
data = data.transpose(0, 2, 1, 3)
img1.setImage(data[0, ..., 0])
vb1.setAspectLocked()
vb1.enableAutoRange(True, True)
roi.setZValue(10)
vb1.addItem(roi)
if isinstance(roi, pg.RectROI):
if transpose:
assert roi.getAffineSliceParams(data, img1, axes=(1, 2)) == ([
28.0, 27.0
], ((1.0, 0.0), (0.0, 1.0)), (1.0, 1.0))
else:
assert roi.getAffineSliceParams(data, img1, axes=(1, 2)) == ([
27.0, 28.0
], ((1.0, 0.0), (0.0, 1.0)), (1.0, 1.0))
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
#assert np.all((rgn == data[:, 1:-2, 1:-2, :]) | (rgn == 0))
img2.setImage(rgn[0, ..., 0])
vb2.setAspectLocked()
vb2.enableAutoRange(True, True)
app.processEvents()
assertImageApproved(win, name + '/roi_getarrayregion',
'Simple ROI region selection.')
with pytest.raises(TypeError):
roi.setPos(0, False)
roi.setPos([0.5, 1.5])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name + '/roi_getarrayregion_halfpx',
'Simple ROI region selection, 0.5 pixel shift.')
roi.setAngle(45)
roi.setPos([3, 0])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name + '/roi_getarrayregion_rotate',
'Simple ROI region selection, rotation.')
if testResize:
roi.setSize([60, 60])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name + '/roi_getarrayregion_resize',
'Simple ROI region selection, resized.')
img1.setPos(0, img1.height())
img1.setTransform(QtGui.QTransform().scale(1, -1).rotate(20), True)
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name + '/roi_getarrayregion_img_trans',
'Simple ROI region selection, image transformed.')
vb1.invertY()
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
# on windows, one edge of one ROI handle is shifted slightly; letting this slide with pxCount=10
if pg.Qt.QT_LIB in {'PyQt4', 'PySide'}:
pxCount = 10
else:
pxCount = -1
assertImageApproved(win,
name + '/roi_getarrayregion_inverty',
'Simple ROI region selection, view inverted.',
pxCount=pxCount)
roi.setState(initState)
img1.setPos(0, 0)
img1.setTransform(QtGui.QTransform.fromScale(1, 0.5))
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(
win, name + '/roi_getarrayregion_anisotropic',
'Simple ROI region selection, image scaled anisotropically.')
# allow the roi to be re-used
roi.scene().removeItem(roi)
win.hide()
def check_getArrayRegion(roi, name, testResize=True, transpose=False):
initState = roi.getState()
#win = pg.GraphicsLayoutWidget()
win = pg.GraphicsView()
win.show()
resizeWindow(win, 200, 400)
# Don't use Qt's layouts for testing--these generate unpredictable results.
#vb1 = win.addViewBox()
#win.nextRow()
#vb2 = win.addViewBox()
# Instead, place the viewboxes manually
vb1 = pg.ViewBox()
win.scene().addItem(vb1)
vb1.setPos(6, 6)
vb1.resize(188, 191)
vb2 = pg.ViewBox()
win.scene().addItem(vb2)
vb2.setPos(6, 203)
vb2.resize(188, 191)
img1 = pg.ImageItem(border='w')
img2 = pg.ImageItem(border='w')
vb1.addItem(img1)
vb2.addItem(img2)
np.random.seed(0)
data = np.random.normal(size=(7, 30, 31, 5))
data[0, :, :, :] += 10
data[:, 1, :, :] += 10
data[:, :, 2, :] += 10
data[:, :, :, 3] += 10
if transpose:
data = data.transpose(0, 2, 1, 3)
img1.setImage(data[0, ..., 0])
vb1.setAspectLocked()
vb1.enableAutoRange(True, True)
roi.setZValue(10)
vb1.addItem(roi)
if isinstance(roi, pg.RectROI):
if transpose:
assert roi.getAffineSliceParams(data, img1, axes=(1, 2)) == ([28.0, 27.0], ((1.0, 0.0), (0.0, 1.0)), (1.0, 1.0))
else:
assert roi.getAffineSliceParams(data, img1, axes=(1, 2)) == ([27.0, 28.0], ((1.0, 0.0), (0.0, 1.0)), (1.0, 1.0))
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
#assert np.all((rgn == data[:, 1:-2, 1:-2, :]) | (rgn == 0))
img2.setImage(rgn[0, ..., 0])
vb2.setAspectLocked()
vb2.enableAutoRange(True, True)
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion', 'Simple ROI region selection.')
with pytest.raises(TypeError):
roi.setPos(0, False)
roi.setPos([0.5, 1.5])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_halfpx', 'Simple ROI region selection, 0.5 pixel shift.')
roi.setAngle(45)
roi.setPos([3, 0])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_rotate', 'Simple ROI region selection, rotation.')
if testResize:
roi.setSize([60, 60])
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_resize', 'Simple ROI region selection, resized.')
img1.scale(1, -1)
img1.setPos(0, img1.height())
img1.rotate(20)
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_img_trans', 'Simple ROI region selection, image transformed.')
vb1.invertY()
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_inverty', 'Simple ROI region selection, view inverted.')
roi.setState(initState)
img1.resetTransform()
img1.setPos(0, 0)
img1.scale(1, 0.5)
rgn = roi.getArrayRegion(data, img1, axes=(1, 2))
img2.setImage(rgn[0, ..., 0])
app.processEvents()
assertImageApproved(win, name+'/roi_getarrayregion_anisotropic', 'Simple ROI region selection, image scaled anisotropically.')
# allow the roi to be re-used
roi.scene().removeItem(roi)
def test_PolyLineROI():
rois = [(pg.PolyLineROI([[0, 0], [10, 0], [0, 15]], closed=True,
pen=0.3), 'closed'),
(pg.PolyLineROI([[0, 0], [10, 0], [0, 15]], closed=False,
pen=0.3), 'open')]
#plt = pg.plot()
plt = pg.GraphicsView()
plt.show()
resizeWindow(plt, 200, 200)
vb = pg.ViewBox()
plt.scene().addItem(vb)
vb.resize(200, 200)
#plt.plotItem = pg.PlotItem()
#plt.scene().addItem(plt.plotItem)
#plt.plotItem.resize(200, 200)
plt.scene().minDragTime = 0 # let us simulate mouse drags very quickly.
# seemingly arbitrary requirements; might need longer wait time for some platforms..
QtTest.QTest.qWaitForWindowExposed(plt)
QtTest.QTest.qWait(100)
for r, name in rois:
vb.clear()
vb.addItem(r)
vb.autoRange()
app.processEvents()
assertImageApproved(plt, 'roi/polylineroi/' + name + '_init',
'Init %s polyline.' % name)
initState = r.getState()
assert len(r.getState()['points']) == 3
# hover over center
center = r.mapToScene(pg.Point(3, 3))
mouseMove(plt, center)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_hover_roi',
'Hover mouse over center of ROI.')
# drag ROI
mouseDrag(plt, center, center + pg.Point(10, -10),
QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_drag_roi',
'Drag mouse over center of ROI.')
# hover over handle
pt = r.mapToScene(pg.Point(r.getState()['points'][2]))
mouseMove(plt, pt)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_hover_handle',
'Hover mouse over handle.')
# drag handle
mouseDrag(plt, pt, pt + pg.Point(5, 20), QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_drag_handle',
'Drag mouse over handle.')
# hover over segment
pt = r.mapToScene((pg.Point(r.getState()['points'][2]) +
pg.Point(r.getState()['points'][1])) * 0.5)
mouseMove(plt, pt + pg.Point(0, 2))
assertImageApproved(plt, 'roi/polylineroi/' + name + '_hover_segment',
'Hover mouse over diagonal segment.')
# click segment
mouseClick(plt, pt, QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_click_segment',
'Click mouse over segment.')
# drag new handle
mouseMove(
plt, pt + pg.Point(10, -10)
) # pg bug: have to move the mouse off/on again to register hover
mouseDrag(plt, pt, pt + pg.Point(10, -10), QtCore.Qt.LeftButton)
assertImageApproved(plt,
'roi/polylineroi/' + name + '_drag_new_handle',
'Drag mouse over created handle.')
# clear all points
r.clearPoints()
assertImageApproved(plt, 'roi/polylineroi/' + name + '_clear',
'All points cleared.')
assert len(r.getState()['points']) == 0
# call setPoints
r.setPoints(initState['points'])
assertImageApproved(plt, 'roi/polylineroi/' + name + '_setpoints',
'Reset points to initial state.')
assert len(r.getState()['points']) == 3
# call setState
r.setState(initState)
assertImageApproved(plt, 'roi/polylineroi/' + name + '_setstate',
'Reset ROI to initial state.')
assert len(r.getState()['points']) == 3
plt.hide()
def test_PolyLineROI():
rois = [
(pg.PolyLineROI([[0, 0], [10, 0], [0, 15]], closed=True, pen=0.3), 'closed'),
(pg.PolyLineROI([[0, 0], [10, 0], [0, 15]], closed=False, pen=0.3), 'open')
]
#plt = pg.plot()
plt = pg.GraphicsView()
plt.show()
resizeWindow(plt, 200, 200)
vb = pg.ViewBox()
plt.scene().addItem(vb)
vb.resize(200, 200)
#plt.plotItem = pg.PlotItem()
#plt.scene().addItem(plt.plotItem)
#plt.plotItem.resize(200, 200)
plt.scene().minDragTime = 0 # let us simulate mouse drags very quickly.
# seemingly arbitrary requirements; might need longer wait time for some platforms..
QtTest.QTest.qWaitForWindowShown(plt)
QtTest.QTest.qWait(100)
for r, name in rois:
vb.clear()
vb.addItem(r)
vb.autoRange()
app.processEvents()
assertImageApproved(plt, 'roi/polylineroi/'+name+'_init', 'Init %s polyline.' % name)
initState = r.getState()
assert len(r.getState()['points']) == 3
# hover over center
center = r.mapToScene(pg.Point(3, 3))
mouseMove(plt, center)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_hover_roi', 'Hover mouse over center of ROI.')
# drag ROI
mouseDrag(plt, center, center + pg.Point(10, -10), QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_drag_roi', 'Drag mouse over center of ROI.')
# hover over handle
pt = r.mapToScene(pg.Point(r.getState()['points'][2]))
mouseMove(plt, pt)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_hover_handle', 'Hover mouse over handle.')
# drag handle
mouseDrag(plt, pt, pt + pg.Point(5, 20), QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_drag_handle', 'Drag mouse over handle.')
# hover over segment
pt = r.mapToScene((pg.Point(r.getState()['points'][2]) + pg.Point(r.getState()['points'][1])) * 0.5)
mouseMove(plt, pt+pg.Point(0, 2))
assertImageApproved(plt, 'roi/polylineroi/'+name+'_hover_segment', 'Hover mouse over diagonal segment.')
# click segment
mouseClick(plt, pt, QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_click_segment', 'Click mouse over segment.')
# drag new handle
mouseMove(plt, pt+pg.Point(10, -10)) # pg bug: have to move the mouse off/on again to register hover
mouseDrag(plt, pt, pt + pg.Point(10, -10), QtCore.Qt.LeftButton)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_drag_new_handle', 'Drag mouse over created handle.')
# clear all points
r.clearPoints()
assertImageApproved(plt, 'roi/polylineroi/'+name+'_clear', 'All points cleared.')
assert len(r.getState()['points']) == 0
# call setPoints
r.setPoints(initState['points'])
assertImageApproved(plt, 'roi/polylineroi/'+name+'_setpoints', 'Reset points to initial state.')
assert len(r.getState()['points']) == 3
# call setState
r.setState(initState)
assertImageApproved(plt, 'roi/polylineroi/'+name+'_setstate', 'Reset ROI to initial state.')
assert len(r.getState()['points']) == 3