def plotContours(self, widget):
"""Plot the stored image and outline of the fitted ROIs onto the widget"""
viewbox = widget.addViewBox()
viewbox.addItem(pg.ImageItem(_transform(self._imvals)))
for i, df in self.df.iterrows(): # note: image coordinates inverted
e = pg.EllipseROI(
(df['xc'] - self._d * 0.5,
self._imvals.shape[0] - df['yc'] - self._d * 0.25),
(2 * df['w'], 2 * df['h']), # origin is bottom-left
movable=False,
rotatable=False,
resizable=False,
pen=pg.intColor(i, self._n))
viewbox.addItem(e)
for h in e.getHandles():
e.removeHandle(h)
s = pg.ROI(
(df['xc'] - self._d,
self._imvals.shape[0] - df['yc'] - self._d),
(2 * self._d, 2 * self._d), # origin is bottom-left
movable=False,
rotatable=False,
resizable=False,
pen='w')
viewbox.addItem(s)
def togglePhotometryMode(self):
if not self.rois:
self.rois = []
self.rois.append(pg.EllipseROI([100, 150], [30, 20], pen=(7 , 3)) )
for roi in self.rois:
# roi.sigRegionChanged.connect(self.updateROIs)
self.view.addItem(roi)
def __init__(self, **kwargs):
""" """
super().__init__(**kwargs)
# Draw ROI for eyes region selection:
self.pre_th = [0, 0]
self.eye_params = self.experiment.pipeline.eyetrack._params
self.roi_eyes = pg.ROI(
pos=self.eye_params.wnd_pos,
size=self.eye_params.wnd_dim,
pen=dict(color=(5, 40, 200), width=3),
)
self.roi_eyes.addScaleHandle([0, 0], [1, 1])
self.roi_eyes.addScaleHandle([1, 1], [0, 0])
self.curves_eyes = [
pg.EllipseROI(
pos=(0, 0), size=(10, 10), movable=False, pen=dict(color=k, width=3)
)
for k in [(5, 40, 230), (40, 230, 5)]
]
for c in self.curves_eyes:
self.display_area.addItem(c)
[c.removeHandle(h) for h in c.getHandles()]
self.initialise_roi(self.roi_eyes)
self.setting_param_val = False
def initializeUI(self):
image_logic = self.image_logic
roi_logic = self.roi_logic
widget = pg.GraphicsWindow(border=True)
widget.setWindowTitle(self.description)
self.addWidget(widget)
layout = widget.addLayout(row=0, col=0)
view = layout.addViewBox(row=0, col=0, rowspan=2, lockAspect=True)
self.view = view
full_image_item = pg.ImageItem(image_logic.image_array)
self.full_image_item = full_image_item
spacing = image_logic.image.GetSpacing()
size = image_logic.image.GetSize()
rect = QtCore.QRectF(0, 0,
640, 640*size[1]*spacing[1]/size[0]/spacing[0])
full_image_item.setRect(rect)
view.addItem(full_image_item)
zoom_roi_view = layout.addViewBox(row=2, col=0)
self.zoom_roi = pg.EllipseROI([300, 200], roi_logic.zoom_roi_pos,
pen=(3, 9))
view.addItem(self.zoom_roi)
self.roi_image_item = pg.ImageItem()
zoom_roi_view.addItem(self.roi_image_item)
self.zoom_roi.sigRegionChanged.connect(self.roi_logic.set_zoom_roi_pos)
self.roi_logic.zoom_roi_pos_changed.connect(self.update_zoom_roi_content)
self.update_zoom_roi_content(self.zoom_roi)
full_image_item.setRect(rect)
def test_getArrayRegion(transpose=False):
pr = pg.PolyLineROI([[0, 0], [27, 0], [0, 28]], closed=True)
pr.setPos(1, 1)
rois = [
(pg.ROI([1, 1], [27, 28], pen='y'), 'baseroi'),
(pg.RectROI([1, 1], [27, 28], pen='y'), 'rectroi'),
(pg.EllipseROI([1, 1], [27, 28], pen='y'), 'ellipseroi'),
(pr, 'polylineroi'),
]
for roi, name in rois:
# For some ROIs, resize should not be used.
testResize = not isinstance(roi, pg.PolyLineROI)
origMode = pg.getConfigOption('imageAxisOrder')
try:
if transpose:
pg.setConfigOptions(imageAxisOrder='row-major')
check_getArrayRegion(roi,
'roi/' + name,
testResize,
transpose=True)
else:
pg.setConfigOptions(imageAxisOrder='col-major')
check_getArrayRegion(roi, 'roi/' + name, testResize)
finally:
pg.setConfigOptions(imageAxisOrder=origMode)
def initROI(self,
imv,
pos,
size,
angle,
pen,
updateFunc=None,
releaseFunc=None):
"""Add an ROI to an ImageView."""
roi = pg.EllipseROI(pos, size, angle=angle, pen=pen)
if updateFunc is not None:
roi.sigRegionChanged.connect(updateFunc)
if releaseFunc is not None:
roi.sigRegionChangeFinished.connect(releaseFunc)
if updateFunc is None and releaseFunc is None:
roi = pg.EllipseROI(pos, size, angle=angle, pen=pen, movable=False)
imv.getView().addItem(roi)
self.param_gui['roi'] = roi
return roi
def addEllipse(self):
if self.ellipse == None and self.imagedata is not None:
x, y = self.imagedata.shape
unit = np.sqrt(x * y) / 4
self.ellipse = pg.EllipseROI(pos=[(x / 2) - unit,
(y / 2) - unit * 1.5],
size=[unit * 2, unit * 3],
pen={'color': "00FF7F"})
self.addItem(self.ellipse)
self.rois.append('ellipse')
def draw(self, parent, imy, imx, dy, dx):
roipen = pg.mkPen(self.color, width=3,
style=QtCore.Qt.SolidLine)
self.ROI = pg.EllipseROI([imx, imy], [dx, dy], pen=roipen, removable=True)
self.ROI.handleSize = 8
self.ROI.handlePen = roipen
self.ROI.addScaleHandle([1, 0.5], [0., 0.5])
self.ROI.addScaleHandle([0.5, 0], [0.5, 1])
self.ROI.setAcceptedMouseButtons(QtCore.Qt.LeftButton)
parent.p0.addItem(self.ROI)
def __init__(self, **kwargs):
""" """
super().__init__(**kwargs)
# We need to initialise the ellipse, add it to the area, and remove
# the handles from the ellipseROI:
self.fly_ell = pg.EllipseROI(pos=(0, 0), size=(10, 10), movable=False, pen=None)
self.display_area.addItem(self.fly_ell)
[self.fly_ell.removeHandle(h) for h in self.fly_ell.getHandles()]
self.pre_th = 0
def pick(self, win, pos):
self.cleanup()
self.win = win
self.view = self.ivl.ortho_views[self.win]
fx, fy = self._xy_coords(pos)
self.roisel = pg.EllipseROI((fx, fy), (1, 1), pen=(255, 0, 255))
self.view.vb.addItem(self.roisel)
self.ox, self.oy = fx, fy
self._points = [(fx, fy), (fx, fy + 1), (fx + 1, fy + 1), (fx + 1, fy)]
def test_getArrayRegion():
pr = pg.PolyLineROI([[0, 0], [27, 0], [0, 28]], closed=True)
pr.setPos(1, 1)
rois = [
(pg.ROI([1, 1], [27, 28], pen='y'), 'baseroi'),
(pg.RectROI([1, 1], [27, 28], pen='y'), 'rectroi'),
(pg.EllipseROI([1, 1], [27, 28], pen='y'), 'ellipseroi'),
(pr, 'polylineroi'),
]
for roi, name in rois:
# For some ROIs, resize should not be used.
testResize = not isinstance(roi, pg.PolyLineROI)
check_getArrayRegion(roi, 'roi/'+name, testResize)
def setup(self):
self.winImage = pg.GraphicsLayoutWidget()
self.winImage.setContentsMargins(0,0,0,0)
self.winImage.setAspectLocked(True)
self.winImage.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.winImage.ci.setContentsMargins(0,0,0,0)
vbox2=QVBoxLayout()
vbox2.addWidget(self.winImage)
vbox2.setContentsMargins(1,1,1,1)
self.p1=self.winImage.addPlot()
self.imh=pg.ImageItem()
self.p1.addItem(self.imh)
self.p1.setMouseEnabled(x=False,y=False)
self.p1.setContentsMargins(0,0,0,0)
self.p1.setAspectLocked(True,ratio=1)
self.p1.showAxis('right',show=False)
self.p1.showAxis('top',show=False)
self.p1.showAxis('left',show=False)
self.p1.showAxis('bottom',show=False)
self.vLine = pg.InfiniteLine(angle=90, movable=False,pen='y')
self.hLine = pg.InfiniteLine(angle=0, movable=False,pen='y')
self.p1.addItem(self.vLine)
self.p1.addItem(self.hLine, ignoreBounds=False)
self.xc=int(self.confCCD.value(self.nbcam+"/xc"))
self.yc=int(self.confCCD.value(self.nbcam+"/yc"))
self.rx=int(self.confCCD.value(self.nbcam+"/rx"))
self.ry=int(self.confCCD.value(self.nbcam+"/ry"))
self.vLine.setPos(self.xc)
self.hLine.setPos(self.yc)
self.ro1=pg.EllipseROI([self.xc,self.yc],[self.rx,self.ry],pen='y',movable=False,maxBounds=QtCore.QRectF(0,0,self.rx,self.ry))
self.ro1.setPos([self.xc-(self.rx/2),self.yc-(self.ry/2)])
self.p1.addItem(self.ro1)
self.hist = pg.HistogramLUTItem()
self.hist.setImageItem(self.imh)
self.hist.autoHistogramRange()
self.hist.gradient.loadPreset('flame')
HLayout=QHBoxLayout()
HLayout.addLayout(vbox2)
self.setLayout(HLayout)
def draw(self, parent, imy, imx, dy, dx, angle=0):
roipen = pg.mkPen(self.color, width=3, style=QtCore.Qt.SolidLine)
self.ROI = pg.EllipseROI([imx, imy], [dx, dy],
angle=angle,
movable=self.moveable,
rotatable=self.moveable,
resizable=self.moveable,
pen=roipen,
removable=self.moveable)
self.ROI.handleSize = 7
self.ROI.handlePen = roipen
if self.moveable:
self.ROI.addScaleHandle([0.5, 0], [0.5, 1])
self.ROI.setAcceptedMouseButtons(QtCore.Qt.LeftButton)
parent.pPupil.addItem(self.ROI)
def draw(self,
parent,
imy,
imx,
dy,
dx,
angle=0,
movable=True,
removable=True):
roipen = pg.mkPen(self.color, width=2, style=QtCore.Qt.SolidLine)
self.ROI = pg.EllipseROI([imx, imy], [dx, dy],
pen=roipen,
movable=True,
removable=True,
resizable=False,
rotatable=False)
self.ROI.handleSize = 1
self.ROI.handlePen = roipen
self.ROI.addScaleHandle([0.1, 0], [0.1, 0.2])
self.ROI.setAcceptedMouseButtons(QtCore.Qt.LeftButton)
self.add_to_view(parent.view_Center)
def __init__(self, tail=False, eyes=False, **kwargs):
""" """
self.eyes = eyes
self.tail = tail
super().__init__(**kwargs)
# Draw ROI for tail selection:
if tail:
self.roi_tail = pg.PolyLineROI(
(
self.track_params["tail_start"],
(
self.track_params["tail_start"][0]
+ self.track_params["tail_length"][0],
self.track_params["tail_start"][1]
+ self.track_params["tail_length"][1],
),
),
pen=dict(color=(40, 5, 200), width=3),
)
# Prepare curve for plotting tracked tail position:
self.curve_tail = pg.PlotCurveItem(pen=dict(color=(230, 40, 5), width=3))
self.display_area.addItem(self.curve_tail)
self.initialise_roi(self.roi_tail)
else:
self.roi_tail = None
self.curve_tail = None
# Draw ROI for eyes region selection:
self.pre_th = [0, 0]
if eyes:
self.roi_eyes = pg.ROI(
pos=self.track_params["wnd_pos"],
size=self.track_params["wnd_dim"],
pen=dict(color=(5, 40, 200), width=3),
)
self.roi_eyes.addScaleHandle([0, 0], [1, 1])
self.roi_eyes.addScaleHandle([1, 1], [0, 0])
self.curves_eyes = [
pg.EllipseROI(
pos=(0, 0), size=(10, 10), movable=False, pen=dict(color=k, width=3)
)
for k in [(5, 40, 230), (40, 230, 5)]
]
for c in self.curves_eyes:
self.display_area.addItem(c)
[c.removeHandle(h) for h in c.getHandles()]
self.tgl_threshold_view = QCheckBox()
self.lbl_threshold_view = QLabel("View thresholded image")
self.layout_control.addWidget(self.tgl_threshold_view)
self.layout_control.addWidget(self.lbl_threshold_view)
self.initialise_roi(self.roi_eyes)
else:
self.roi_eyes = None
self.curves_eyes = None
def setROI(self,ax = 's',type='Poly'):
if self.__image is None:
return
self.__ROIArray = np.zeros(self.__imageArray.shape)
if ax =='S':
self.__ROIAx = ax
if type == 'Poly':
points = np.array([[np.shape(self.__sagittal)[0]//4,np.shape(self.__sagittal)[1]//4],
[np.shape(self.__sagittal)[0] // 4, np.shape(self.__sagittal)[1] // 2],
[np.shape(self.__sagittal)[0] // 2, np.shape(self.__sagittal)[1] // 2]]
)
self.__ROI = pg.PolyLineROI(points,closed=True)
elif type=='Circle':
self.__ROI = pg.EllipseROI([np.shape(self.__sagittal)[0] // 2, np.shape(self.__sagittal)[1] // 2], [np.shape(self.__sagittal)[0]//8,np.shape(self.__sagittal)[1]//8])
else:
self.__ROI = pg.RectROI([np.shape(self.__sagittal)[0] // 2, np.shape(self.__sagittal)[1] // 2], [np.shape(self.__sagittal)[0]//8,np.shape(self.__sagittal)[1]//8])
self.p_s.addItem(self.__ROI)
cols, rows = self.__sagittal.shape
m = np.mgrid[:cols, :rows]
self.possx = m[0, :, :] # make the x pos array
self.possy = m[1, :, :] # make the y pos array
self.possx.shape = cols, rows
self.possy.shape = cols, rows
self.__ROISlice = np.zeros(self.__sagittal.shape)
if ax =='A':
self.__ROIAx = ax
if type == 'Poly':
points = np.array([[np.shape(self.__axial)[1] // 4, np.shape(self.__axial)[0] // 4],
[np.shape(self.__axial)[1] // 2, np.shape(self.__axial)[0] // 4],
[np.shape(self.__axial)[1] // 2, np.shape(self.__axial)[0] // 2]]
)
self.__ROI = pg.PolyLineROI(points,closed=True)
elif type=='Circle':
self.__ROI = pg.EllipseROI([np.shape(self.__axial)[1] // 2, np.shape(self.__axial)[0] // 2], [np.shape(self.__axial)[1] // 8, np.shape(self.__axial)[0] // 8])
else:
self.__ROI = pg.RectROI([np.shape(self.__axial)[1] // 2, np.shape(self.__axial)[0] // 2], [np.shape(self.__axial)[1] // 8, np.shape(self.__axial)[0] // 8])
self.p_a.addItem(self.__ROI)
# print('add a!',points)
cols, rows = self.__axial.shape
m = np.mgrid[:cols, :rows]
self.possx = m[0, :, :] # make the x pos array
self.possy = m[1, :, :] # make the y pos array
self.possx.shape = cols, rows
self.possy.shape = cols, rows
self.__ROISlice = np.zeros(self.__axial.shape)
if ax =='C':
self.__ROIAx = ax
if type == 'Poly':
points = np.array([[np.shape(self.__coronal)[1] // 4, np.shape(self.__coronal)[0] // 4],
[np.shape(self.__coronal)[1] // 2, np.shape(self.__coronal)[0] // 4],
[np.shape(self.__coronal)[1] // 2, np.shape(self.__coronal)[0] // 2]]
)
self.__ROI = pg.PolyLineROI(points,closed=True)
elif type=='Circle':
self.__ROI = pg.EllipseROI([np.shape(self.__coronal)[1] // 2, np.shape(self.__coronal)[0] // 2], [np.shape(self.__coronal)[1] // 8, np.shape(self.__coronal)[0] // 8])
else:
self.__ROI = pg.RectROI([np.shape(self.__coronal)[1] // 2, np.shape(self.__coronal)[0] // 2], [np.shape(self.__coronal)[1] // 8, np.shape(self.__coronal)[0] // 8])
self.p_c.addItem(self.__ROI)
cols, rows = self.__coronal.shape
m = np.mgrid[:cols, :rows]
self.possx = m[0, :, :] # make the x pos array
self.possy = m[1, :, :] # make the y pos array
self.possx.shape = cols, rows
self.possy.shape = cols, rows
self.__ROISlice = np.zeros(self.__coronal.shape)
def setROI(self, shape, rect=((10, 10), (20, 20))):
'''ROI 추가를 위한 메서드. 좌상, 우하 좌표와, 모양을 인자로 받아
선형, 사각형, 다선형, 삼각형, 원형의 ROI를 추가한다'''
make = [pg.LineROI, pg.RectROI]
roi_lst = []
roi_id = len(self.roi_lst)
def update(roi):
'''ROI에 변화가 생겼을 대에 이를 다른 뷰에 적용시킨다'''
state = roi.saveState()
for r in self.roi_lst[roi_id]:
r.setAngle(state['angle'], update=False)
r.setPos(state['pos'], update=False)
r.setSize(state['size'], update=False)
def clicked(roi):
'''ROI 우클릭 시에 팝업 윈도우를 보여준다'''
ROIPopup(roi, self.ui)
print "clicked"
(x1, y1), (x2, y2) = rect
x = min(x1, x2)
y = min(y1, y2)
xlen = abs(x1 - x2)
ylen = abs(y1 - y2)
for widget in self.widget_lst:
if shape == 0:
roi = pg.LineROI([x1, y1], [x2, 2 * y1 - y2],
width=0,
pen=(1, 9))
elif shape == 1:
roi = pg.RectROI([x, y], [xlen, ylen], pen=(3, 9))
elif shape == 2:
roi = pg.PolyLineROI(
[[x, y + ylen], [x + xlen / 4, y], [
x + xlen / 2, y + ylen
], [x + xlen * 3 / 4, y], [x + xlen, y + ylen]],
closed=False,
pen=(5, 9))
elif shape == 3:
roi = pg.PolyLineROI(
[[x, y], [x + xlen / 4, y + ylen], [x + xlen / 2, y],
[x + xlen * 3 / 4, y + ylen], [x + xlen, y]],
closed=False,
pen=(7, 9))
elif shape == 4:
roi = pg.PolyLineROI(
[[x, y], [x + xlen / 2, y + ylen], [x + xlen, y]],
closed=True,
pen=(9, 9))
elif shape == 5:
roi = pg.EllipseROI([x, y], [xlen, ylen], pen=(4, 9))
else:
raise Exception("Shape unbound")
# 시그널 연결
roi.sigRegionChanged.connect(update)
roi.setAcceptedMouseButtons(QtCore.Qt.RightButton)
roi.sigClicked.connect(clicked)
if shape == 2 or shape == 3 or shape == 4:
for seg in roi.segments:
seg.sigRegionChanged.connect(update)
widget.addItem(roi)
roi_lst.append(roi)
self.roi_lst.append(roi_lst)
return x
def setup(self):
vbox1=QVBoxLayout()
self.camNameLabel=QLabel('nomcam',self)
self.camNameLabel.setText(self.confCCD.value(self.nbcam+"/name"))
self.camNameLabel.setAlignment(Qt.AlignCenter)
self.camNameLabel.setStyleSheet('font: bold 20px')
self.camNameLabel.setStyleSheet('color: yellow')
vbox1.addWidget(self.camNameLabel)
hbox1=QHBoxLayout() # horizontal layout pour run et stop
self.runButton=QPushButton(self)
self.runButton.setMaximumWidth(60)
self.runButton.setMinimumHeight(60)
self.runButton.setStyleSheet("QPushButton:!pressed{border-image: url(./icons/Circled Play-595b40b65ba036ed117d436f.svg);background-color: rgb(0, 0, 0,0) ;border-color: green;}""QPushButton:pressed{image: url(./icons/Circled Play-595b40b65ba036ed117d436f.svg);background-color: rgb(0, 0, 0,0) ;border-color: rgb(0, 0, 0)}")
self.stopButton=QPushButton(self)
self.stopButton.setMaximumWidth(60)
self.stopButton.setMinimumHeight(50)
self.stopButton.setStyleSheet("QPushButton:!pressed{border-image: url(./icons/Stop.svg);background-color: rgb(0, 0, 0,0) ;border-color: rgb(0, 0, 0,0);}""QPushButton:pressed{image: url(./icons/Stop.svg);background-color: rgb(0, 0, 0,0) ;border-color: rgb(0, 0, 0)}")
hbox1.addWidget(self.runButton)
hbox1.addWidget(self.stopButton)
# self.oneButton=QPushButton(self)
# hbox1.addWidget(self.oneButton)
vbox1.addLayout(hbox1)
self.trigg=QComboBox()
self.trigg.setMaximumWidth(60)
self.trigg.addItem('OFF')
self.trigg.addItem('ON')
self.labelTrigger=QLabel('Trigger')
self.labelTrigger.setMaximumWidth(60)
self.itrig=self.trigg.currentIndex()
hbox2=QHBoxLayout()
hbox2.addWidget(self.labelTrigger)
hbox2.addWidget(self.trigg)
vbox1.addLayout(hbox2)
self.labelExp=QLabel('Exposure (ms)')
self.labelExp.setMaximumWidth(120)
self.labelExp.setAlignment(Qt.AlignCenter)
vbox1.addWidget(self.labelExp)
self.hSliderShutter=QSlider(Qt.Horizontal)
self.hSliderShutter.setMinimum(1)
self.hSliderShutter.setMaximum(1000)
self.hSliderShutter.setMaximumWidth(120)
self.shutterBox=QSpinBox()
self.shutterBox.setMinimum(1)
self.shutterBox.setMaximum(1000)
self.shutterBox.setMaximumWidth(60)
hboxShutter=QHBoxLayout()
hboxShutter.addWidget(self.hSliderShutter)
hboxShutter.addWidget(self.shutterBox)
vbox1.addLayout(hboxShutter)
hboxGain=QHBoxLayout()
self.labelGain=QLabel('Gain')
self.labelGain.setMaximumWidth(120)
self.labelGain.setAlignment(Qt.AlignCenter)
vbox1.addWidget(self.labelGain)
self.hSliderGain=QSlider(Qt.Horizontal)
self.hSliderGain.setMaximumWidth(120)
self.gainBox=QSpinBox()
self.gainBox.setMaximumWidth(60)
hboxGain.addWidget(self.hSliderGain)
hboxGain.addWidget(self.gainBox)
vbox1.addLayout(hboxGain)
hbox3=QHBoxLayout()
self.checkBoxScale=QCheckBox('AScale',self)
self.checkBoxScale.setChecked(True)
self.checkBoxScale.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}""QCheckBox::indicator:unchecked { image : url(./icons/Toggle Off-595b40b85ba036ed117dac78.svg);}""QCheckBox::indicator:checked { image: url(./icons/Toggle On-595b40b85ba036ed117dac79.svg);}")
hbox3.addWidget(self.checkBoxScale)
self.checkBoxColor=QCheckBox('Color',self)
self.checkBoxColor.setChecked(True)
self.checkBoxColor.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}""QCheckBox::indicator:unchecked { image : url(./icons/Toggle Off-595b40b85ba036ed117dac78.svg);}""QCheckBox::indicator:checked { image: url(./icons/Toggle On-595b40b85ba036ed117dac79.svg);}")
hbox3.addWidget(self.checkBoxColor)
vbox1.addLayout(hbox3)
hbox4=QHBoxLayout()
self.checkBoxZoom=QCheckBox('Zoom',self)
self.checkBoxZoom.setChecked(False)
self.checkBoxZoom.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}""QCheckBox::indicator:unchecked { image : url(./icons/Toggle Off-595b40b85ba036ed117dac78.svg);}""QCheckBox::indicator:checked { image: url(./icons/Toggle On-595b40b85ba036ed117dac79.svg);}")
hbox4.addWidget(self.checkBoxZoom)
self.checkBoxFullScreen=QCheckBox('FScreen',self)
self.checkBoxFullScreen.setChecked(False)
self.checkBoxFullScreen.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}""QCheckBox::indicator:unchecked { image : url(./icons/Toggle Off-595b40b85ba036ed117dac78.svg);}""QCheckBox::indicator:checked { image: url(./icons/Toggle On-595b40b85ba036ed117dac79.svg);}")
hbox4.addWidget(self.checkBoxFullScreen)
vbox1.addLayout(hbox4)
vbox1.setContentsMargins(0,0,0,0)
vbox1.addStretch(1)
self.vbox1=vbox1
### affichage image###
self.winImage = pg.GraphicsLayoutWidget()
self.winImage.setContentsMargins(0,0,0,0)
self.winImage.setAspectLocked(True)
self.winImage.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
self.winImage.ci.setContentsMargins(0,0,0,0)
vbox2=QVBoxLayout()
vbox2.addWidget(self.winImage)
vbox2.setContentsMargins(1,1,1,1)
self.p1=self.winImage.addPlot()
self.imh=pg.ImageItem()
self.p1.addItem(self.imh)
self.p1.setMouseEnabled(x=False,y=False)
self.p1.setContentsMargins(0,0,0,0)
self.p1.setAspectLocked(True,ratio=1)
self.p1.showAxis('right',show=False)
self.p1.showAxis('top',show=False)
self.p1.showAxis('left',show=False)
self.p1.showAxis('bottom',show=False)
self.vLine = pg.InfiniteLine(angle=90, movable=False,pen='y')
self.hLine = pg.InfiniteLine(angle=0, movable=False,pen='y')
self.p1.addItem(self.vLine)
self.p1.addItem(self.hLine, ignoreBounds=False)
self.xc=int(self.confCCD.value(self.nbcam+"/xc"))
self.yc=int(self.confCCD.value(self.nbcam+"/yc"))
self.rx=int(self.confCCD.value(self.nbcam+"/rx"))
self.ry=int(self.confCCD.value(self.nbcam+"/ry"))
self.vLine.setPos(self.xc)
self.hLine.setPos(self.yc)
self.ro1=pg.EllipseROI([self.xc,self.yc],[self.rx,self.ry],pen='y',movable=False)#maxBounds=QtCore.QRectF(0,0,self.rx,self.ry)
self.ro1.setPos([self.xc-(self.rx/2),self.yc-(self.ry/2)])
self.p1.addItem(self.ro1)
#histogramme
self.hist = pg.HistogramLUTItem()
self.hist.setImageItem(self.imh)
self.hist.autoHistogramRange()
self.hist.gradient.loadPreset('flame')
## Graph coupe XY
self.curve2=pg.PlotCurveItem()
self.curve3=pg.PlotCurveItem()
## main layout
hMainLayout=QHBoxLayout()
if self.visuGauche==True:
hMainLayout.addLayout(self.vbox1)
hMainLayout.addLayout(vbox2)
else:
hMainLayout.addLayout(vbox2)
hMainLayout.addLayout(self.vbox1)
hMainLayout.setContentsMargins(1,1,1,1)
hMainLayout.setSpacing(1)
hMainLayout.setStretch(3,1)
self.setLayout(hMainLayout)
self.setContentsMargins(1,1,1,1)
# Blocage de la souris
self.shortcutb=QtGui.QShortcut(QtGui.QKeySequence("Ctrl+b"),self)
self.shortcutb.activated.connect(self.bloquer)
self.shortcutb.setContext(Qt.ShortcutContext(3))
self.shortcutd=QtGui.QShortcut(QtGui.QKeySequence("Ctrl+d"),self)
self.shortcutd.activated.connect(self.debloquer)
self.shortcutd.setContext(Qt.ShortcutContext(3))
self.shortcutPu=QShortcut(QtGui.QKeySequence("+"),self)
self.shortcutPu.activated.connect(self.paletteup)
self.shortcutPu.setContext(Qt.ShortcutContext(3))
#3: The shortcut is active when its parent widget, or any of its children has focus. default O The shortcut is active when its parent widget has focus.
self.shortcutPd=QtGui.QShortcut(QtGui.QKeySequence("-"),self)
self.shortcutPd.activated.connect(self.palettedown)
self.shortcutPd.setContext(Qt.ShortcutContext(3))
# mvt de la souris
self.proxy=pg.SignalProxy(self.p1.scene().sigMouseMoved, rateLimit=60, slot=self.mouseMoved)
self.vb=self.p1.vb
# text pour afficher fwhm sur p1
self.textX = pg.TextItem(angle=-90)
self.textY = pg.TextItem()
def setup(self):
# definition of all button
TogOff=self.icon+'Toggle_Off.png'
TogOn=self.icon+'Toggle_On.png'
TogOff=pathlib.Path(TogOff)
TogOff=pathlib.PurePosixPath(TogOff)
TogOn=pathlib.Path(TogOn)
TogOn=pathlib.PurePosixPath(TogOn)
self.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}""QCheckBox::indicator:unchecked { image : url(%s);}""QCheckBox::indicator:checked { image: url(%s);}""QCheckBox{font :10pt;}" % (TogOff,TogOn) )
vbox1=QVBoxLayout()
self.hbox0=QHBoxLayout()
vbox1.addLayout(self.hbox0)
hbox1=QHBoxLayout()
self.checkBoxPlot=QCheckBox('CROSS',self)
self.checkBoxPlot.setChecked(False)
self.label_CrossValue=QLabel()
self.label_CrossValue.setStyleSheet("font:13pt")
hbox1.addWidget(self.checkBoxPlot)
hbox1.addWidget(self.label_CrossValue)
hbox2=QHBoxLayout()
self.label_Cross=QLabel()
#self.label_Cross.setMaximumHeight(20)
self.label_Cross.setMaximumWidth(170)
self.label_Cross. setStyleSheet("font:12pt")
hbox2.addWidget(self.label_Cross)
vbox1.addLayout(hbox1)
vbox1.addLayout(hbox2)
self.ZoomLabel=QLabel('Zoom')
vbox1.addWidget(self.ZoomLabel)
self.checkBoxZoom=QSlider(Qt.Horizontal)
self.checkBoxZoom.setMaximumWidth(250)
self.checkBoxZoom.setMinimum(0)
self.checkBoxZoom.setMaximum(200)
self.checkBoxZoom.setValue(0)
vbox1.addWidget(self.checkBoxZoom)
self.checkBoxScale=QCheckBox('Auto Scale',self)
self.checkBoxScale.setChecked(True)
self.checkBoxScale.setMaximumWidth(100)
self.checkBoxColor=QCheckBox('Color',self)
self.checkBoxColor.setChecked(True)
self.checkBoxHist=QCheckBox('Hist',self)
self.checkBoxHist.setChecked(False)
self.maxGraphBox=QCheckBox('Max',self)
hbox3=QHBoxLayout()
grid_layout = QGridLayout()
grid_layout.setVerticalSpacing(0)
grid_layout.setHorizontalSpacing(10)
grid_layout.addWidget(self.checkBoxScale, 0, 0)
grid_layout.addWidget(self.checkBoxColor,1,0)
grid_layout.addWidget(self.checkBoxHist, 0, 1)
#grid_layout.addWidget(self.checkBoxZoom, 1, 0)
grid_layout.addWidget(self.maxGraphBox, 1,1)
hbox3.addLayout(grid_layout)
vbox1.addLayout(hbox3)
hbox4=QHBoxLayout()
if self.meas=='on':
self.MeasButton=QPushButton('Meas.')
hbox4.addWidget(self.MeasButton)
vbox1.addLayout(hbox4)
vbox1.addStretch(1)
self.winImage = pg.GraphicsLayoutWidget()
#self.winImage.setContentsMargins(1,1,1,1)
self.winImage.setAspectLocked(True)
self.winImage.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
#self.winImage.ci.setContentsMargins(1,1,1,1)
vbox2=QVBoxLayout()
# self.dockImage=QDockWidget(self)
# self.dockImage.setWidget(self.winImage)
# self.dockImage.setFeatures(QDockWidget.DockWidgetFloatable)
#vbox2.addWidget(self.dockImage)
vbox2.addWidget(self.winImage)
vbox2.setContentsMargins(0,0,0,0)
self.p1=self.winImage.addPlot()
self.imh=pg.ImageItem()
self.axeX=self.p1.getAxis('bottom')
self.axeY=self.p1.getAxis('left')
self.p1.addItem(self.imh)
self.p1.setMouseEnabled(x=False,y=False)
self.p1.setContentsMargins(0,0,0,0)
self.p1.setAspectLocked(True,ratio=1)
self.p1.showAxis('right',show=False)
self.p1.showAxis('top',show=False)
self.p1.showAxis('left',show=True)
self.p1.showAxis('bottom',show=True)
if self.bloqKeyboard==True:
self.vLine = pg.InfiniteLine(angle=90, movable=False,pen='r')
self.hLine = pg.InfiniteLine(angle=0, movable=False,pen='r')
else:
self.vLine = pg.InfiniteLine(angle=90, movable=False,pen='y')
self.hLine = pg.InfiniteLine(angle=0, movable=False,pen='y')
self.xc=int(self.conf.value(self.name+"/xc"))
self.yc=int(self.conf.value(self.name+"/yc"))
self.rx=int(self.conf.value(self.name+"/rx"))
self.ry=int(self.conf.value(self.name+"/ry"))
self.vLine.setPos(self.xc)
self.hLine.setPos(self.yc)
self.ro1=pg.EllipseROI([self.xc,self.yc],[self.rx,self.ry],pen='y',movable=False,maxBounds=QtCore.QRectF(0,0,self.rx,self.ry))
self.ro1.setPos([self.xc-(self.rx/2),self.yc-(self.ry/2)])
# text for fwhm on p1
self.textX = pg.TextItem(angle=-90)
self.textY = pg.TextItem()
#histogram
self.hist = pg.HistogramLUTItem()
self.hist.setImageItem(self.imh)
self.hist.autoHistogramRange()
self.hist.gradient.loadPreset('flame')
## XY graph
self.curve2=pg.PlotCurveItem()
self.curve3=pg.PlotCurveItem()
## main layout
hMainLayout=QHBoxLayout()
if self.aff=='right':
hMainLayout.addLayout(vbox2)
hMainLayout.addLayout(vbox1)
else :
hMainLayout.addLayout(vbox1)
hMainLayout.addLayout(vbox2)
hMainLayout.setContentsMargins(1,1,1,1)
hMainLayout.setSpacing(1)
hMainLayout.setStretch(10,1)
self.setLayout(hMainLayout)
self.setContentsMargins(1,1,1,1)
def draw_shape(self):
"""
Adds a selected ROI shape in the selected image to create mask
"""
self.masking = 1
if self.shape_ListWidget.count() == 0:
self.mask = {}
self.mask_number = 0
self.mask_val = {}
centerx = self.imageData.shape[
0] / 2 #(self.image_xmax+self.image_xmin)/2.0
centery = self.imageData.shape[
1] / 2 #(self.image_ymax+self.image_ymin)/2.0
lenx = self.imageData.shape[0] #(self.image_xmax-self.image_xmin)
leny = self.imageData.shape[1] #(self.image_ymax-self.image_ymin)
self.roiPS = int(self.roiPSLineEdit.text())
self.roiLW = int(self.roiLWLineEdit.text())
self.roiPen = pg.mkPen(color=self.roiColorButton.color(),
width=self.roiLW)
if str(self.maskShapeComboBox.currentText()) == 'upper-threshold':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
self.mask_val[self.mask_number] = 1
self.threshold[self.mask_number], _ = QInputDialog.getDouble(
self, 'Upper-threshold', 'Upper-threshld value:', value=1e6)
self.shape_ListWidget.addItem(
str(self.mask_number) + ':upper-threshold: val=%.e' %
(self.threshold[self.mask_number]))
elif str(self.maskShapeComboBox.currentText()) == 'lower-threshold':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
self.mask_val[self.mask_number] = 1
self.threshold[self.mask_number], _ = QInputDialog.getDouble(
self,
'Lower-threshold value',
'Lower-threshld value:',
value=0)
self.shape_ListWidget.addItem(
str(self.mask_number) + ':lower-threshold: val=%.e' %
(self.threshold[self.mask_number]))
elif str(self.maskShapeComboBox.currentText()) == 'rectangle':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
pos = [centerx - 0.1 * lenx / 2.0, centery - 0.1 * leny / 2.0]
size = [0.1 * lenx, 0.1 * leny]
self.mask[self.mask_number] = pg.ROI(pos, size, pen=self.roiPen)
self.mask_val[self.mask_number] = 1
#self.mask[self.mask_number].addRotateFreeHandle((0,0),(0.5,0.5))
self.mask[self.mask_number].addScaleHandle((1, 1), (0.0, 0.0))
self.shape_ListWidget.addItem(
str(self.mask_number) + ':rectangle: pos=' + str(pos) +
';size=' + str(size) + ';val=' +
str(self.mask_val[self.mask_number]))
elif str(self.maskShapeComboBox.currentText()) == 'inverted-rectangle':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
pos = [centerx - 0.1 * lenx / 2.0, centery - 0.1 * leny / 2.0]
size = [0.1 * lenx, 0.1 * leny]
self.mask[self.mask_number] = pg.ROI(pos, size, pen=self.roiPen)
self.mask_val[self.mask_number] = -1
#self.mask[self.mask_number].addRotateFreeHandle((0,0),(0.5,0.5))
self.mask[self.mask_number].addScaleHandle((1, 1), (0.0, 0.0))
self.shape_ListWidget.addItem(
str(self.mask_number) + ':inverted-rectangle: pos=' +
str(pos) + ';size=' + str(size) + ';val=' +
str(self.mask_val[self.mask_number]))
elif self.maskShapeComboBox.currentText() == 'ellipse':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
pos = [centerx, centery]
size = [0.1 * lenx, 0.1 * leny]
self.mask[self.mask_number] = pg.EllipseROI(pos,
size,
pen=self.roiPen)
self.mask_val[self.mask_number] = 1
self.shape_ListWidget.addItem(
str(self.mask_number) + ':ellipse: pos=' + str(pos) +
';size=' + str(size) + ';val=' +
str(self.mask_val[self.mask_number]))
elif self.maskShapeComboBox.currentText() == 'inverted-ellipse':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
pos = [centerx, centery]
size = [0.1 * lenx, 0.1 * leny]
self.mask[self.mask_number] = pg.EllipseROI(pos,
size,
pen=self.roiPen)
self.mask_val[self.mask_number] = -1
self.shape_ListWidget.addItem(
str(self.mask_number) + ':inverted-ellipse: pos=' + str(pos) +
';size=' + str(size) + ';val=' +
str(self.mask_val[self.mask_number]))
elif self.maskShapeComboBox.currentText() == 'polyline':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
self.pg_axis.scene().sigMouseClicked.connect(self.draw_polyline)
self.roi_finished = False
self.new_pos = []
self.mask[self.mask_number] = PolyLineROI_new(self.new_pos,
closed=False,
pen=self.roiPen)
self.mask[self.mask_number].pen = self.roiPen
self.tmpLine = PolyLineROI_new(self.new_pos,
closed=False,
pen=self.roiPen)
self.tmpLine.pen = self.roiPen
self.pg_axis.addItem(self.mask[self.mask_number])
self.pg_axis.addItem(self.tmpLine)
return
elif self.maskShapeComboBox.currentText() == 'inverted-polyline':
self.mask_type[
self.mask_number] = self.maskShapeComboBox.currentText()
self.pg_axis.scene().sigMouseClicked.connect(self.draw_polyline)
self.roi_finished = False
self.new_pos = []
self.mask[self.mask_number] = PolyLineROI_new(self.new_pos,
closed=False,
pen=self.roiPen)
self.tmpLine = PolyLineROI_new(self.new_pos,
closed=False,
pen=self.roiPen)
self.pg_axis.addItem(self.mask[self.mask_number])
self.pg_axis.addItem(self.tmpLine)
return
if str(self.maskShapeComboBox.currentText()
) != 'lower-threshold' and str(
self.maskShapeComboBox.currentText()) != 'upper-threshold':
self.pg_axis.addItem(self.mask[self.mask_number])
self.mask[self.mask_number].sigRegionChangeFinished.connect(
self.update_shape)
self.mask[self.mask_number].sigHoverEvent.connect(
self.shape_selected_in_image)
self.mask_number = self.mask_number + 1
def open_shape_file(self):
"""
Opens the shape file
"""
self.masking = 1
self.shape_ListWidget.clear()
fname = QFileDialog.getOpenFileName(filter='Shape Files (*.shp)')[0]
fh = open(fname, 'r')
lines = fh.readlines()
#self.shape_ListWidget.addItems(lines)
for line in lines:
self.shape_ListWidget.addItem(line.strip())
s_line = line.strip().split(':')
self.mask_number = int(s_line[0])
mask_type = s_line[1]
self.mask_type[self.mask_number] = mask_type
if mask_type == 'upper-threshold':
val = eval(s_line[2].split('=')[1])
self.mask_val[self.mask_number] = 1
self.threshold[self.mask_number] = val
self.mask_number += 1
elif mask_type == 'lower-threshold':
val = eval(s_line[2].split('=')[1])
self.mask_val[self.mask_number] = 1
self.threshold[self.mask_number] = val
self.mask_number += 1
elif (mask_type == 'rectangle') or (mask_type
== 'inverted-rectangle'):
size_pos = s_line[2].split(';')
pos = eval(size_pos[0].split('=')[1])
size = eval(size_pos[1].split('=')[1])
val = eval(size_pos[2].split('=')[1])
self.mask[self.mask_number] = pg.ROI(pos, size)
self.mask_val[self.mask_number] = val
#self.mask[self.mask_number].addRotateFreeHandle((0,0),(0.5,0.5))
self.mask[self.mask_number].addScaleHandle((1, 1), (0, 0))
self.mask[self.mask_number].sigRegionChangeFinished.connect(
self.update_shape)
self.mask[self.mask_number].sigHoverEvent.connect(
self.shape_selected_in_image)
self.pg_axis.addItem(self.mask[self.mask_number])
elif (mask_type == 'ellipse') or (mask_type == 'inverted-ellipse'):
size_pos = s_line[2].split(';')
pos = eval(size_pos[0].split('=')[1])
size = eval(size_pos[1].split('=')[1])
val = eval(size_pos[2].split('=')[1])
self.mask[self.mask_number] = pg.EllipseROI(pos, size)
self.mask_val[self.mask_number] = val
self.mask[self.mask_number].sigRegionChangeFinished.connect(
self.update_shape)
self.mask[self.mask_number].sigHoverEvent.connect(
self.shape_selected_in_image)
self.pg_axis.addItem(self.mask[self.mask_number])
else:
pos_val = s_line[2].split(';')
pos = eval(pos_val[0].split('=')[1])
val = eval(pos_val[1].split('=')[1])
self.mask[self.mask_number] = PolyLineROI_new(pos, closed=True)
self.mask_val[self.mask_number] = val
self.mask[self.mask_number].sigRegionChangeFinished.connect(
self.update_shape)
self.mask[self.mask_number].sigHoverEvent.connect(
self.shape_selected_in_image)
self.pg_axis.addItem(self.mask[self.mask_number])
#self.mask[self.mask_number].sigRegionChangeStarted.connect(self.move_shape)
self.mask_number = self.mask_number + 1
def addROI(self, pos, size, angle, pen, movable=True):
roi = pg.EllipseROI(pos, size, angle=angle, pen=pen, movable=movable)
self.getView().addItem(roi)
return roi
def refreshROIView(self, selected_object_index=None):
"""
Draws a user-visible ROI for every ROI that belongs to the selected source
into the CellSelection ImageView.
If a non-image-sequence is selecteda as source, nothing will be displayed.
Also draws a ROI for the Background if it is chosen for the currently selected ROI.
"""
if selected_object_index is None:
selected_object_index = self.data_manager.object_selection
# remove currently shown objects
for roi_view in [
roi_view for roi_view in self.roi_views if roi_view is not None
]:
self.cell_selection.getView().removeItem(roi_view)
self.roi_views = []
# remove background roi if shown
if self.background_roi_view is not None:
self.cell_selection.getView().removeItem(self.background_roi_view)
self.background_roi_view = None
# do not show anything if no roi is selected or selected roi does not belong to image
if selected_object_index is None or self.data_manager.objects[
selected_object_index].source.filetype != 'tif':
self.data_manager.cell_selection.getUserROI().hide()
return
colorTable = colors.getColorTable(len(self.data_manager.objects))
# iterate every roi
for i in range(len(self.data_manager.objects)):
current_is_selected = i == selected_object_index
current_belongs_to_correct_source = self.data_manager.objects[
i].source is self.data_manager.objects[
selected_object_index].source
# only show roi if it belongs to the source that the selected roi belongs to and roi is active (if its inactive but the selected, still show it!)
if current_belongs_to_correct_source and (
self.data_manager.objects[i].active
or current_is_selected):
roi = self.data_manager.objects[i]
# get color for the roi
pen = pg.mkPen(color=colorTable[i], width=2)
if current_is_selected:
# if the roi is the currently selected roi: update the position and color of the roi view, without emitting update signals
roi_view = self.data_manager.cell_selection.getUserROI()
self.data_manager.cell_selection.disconnectUserROISignals()
roi_view.setPen(pen)
roi_view.setPos(roi.pos)
roi_view.setSize(roi.size)
roi_view.setAngle(roi.angle)
self.data_manager.cell_selection.connectUserROISignals()
else:
# otherwise, if the roi is not the currently selected roi: create an roi view
if roi.ellipse_mode:
roi_view = pg.EllipseROI(roi.pos,
roi.size,
angle=roi.angle,
pen=pen,
movable=False)
else:
roi_view = pg.RectROI(roi.pos,
roi.size,
pen=pen,
movable=False)
self.roi_views.append(roi_view)
self.cell_selection.getView().addItem(roi_view)
# remove all handles s.t. it can not be edited
for h in roi_view.getHandles():
roi_view.removeHandle(h)
else:
self.roi_views.append(None)
img1a = pg.ImageItem(arr)
v1a.addItem(img1a)
img1b = pg.ImageItem()
v1b.addItem(img1b)
v1a.disableAutoRange('xy')
v1b.disableAutoRange('xy')
v1a.autoRange()
v1b.autoRange()
rois = []
rois.append(pg.RectROI([20, 20], [20, 20], pen=(0, 9)))
rois[-1].addRotateHandle([1, 0], [0.5, 0.5])
rois.append(pg.LineROI([0, 60], [20, 80], width=5, pen=(1, 9)))
rois.append(
pg.MultiRectROI([[20, 90], [50, 60], [60, 90]], width=5, pen=(2, 9)))
rois.append(pg.EllipseROI([60, 10], [30, 20], pen=(3, 9)))
rois.append(pg.CircleROI([80, 50], [20, 20], pen=(4, 9)))
#rois.append(pg.LineSegmentROI([[110, 50], [20, 20]], pen=(5,9)))
rois.append(
pg.PolyLineROI([[80, 60], [90, 30], [60, 40]], pen=(6, 9), closed=True))
def update(roi):
img1b.setImage(roi.getArrayRegion(arr, img1a), levels=(0, arr.max()))
v1b.autoRange()
for roi in rois:
roi.sigRegionChanged.connect(update)
v1a.addItem(roi)
def setup(self):
TogOff = self.icon + 'Toggle_Off.png'
TogOn = self.icon + 'Toggle_On.png'
TogOff = pathlib.Path(TogOff)
TogOff = pathlib.PurePosixPath(TogOff)
TogOn = pathlib.Path(TogOn)
TogOn = pathlib.PurePosixPath(TogOn)
self.setStyleSheet("QCheckBox::indicator{width: 30px;height: 30px;}"
"QCheckBox::indicator:unchecked { image : url(%s);}"
"QCheckBox::indicator:checked { image: url(%s);}"
"QCheckBox{font :10pt;}" % (TogOff, TogOn))
vbox1 = QVBoxLayout()
hbox2 = QHBoxLayout()
self.openButton = QPushButton('Open', self)
self.openButton.setIcon(QtGui.QIcon(self.icon + "Open.png"))
self.openButton.setIconSize(QtCore.QSize(50, 50))
self.openButton.setMaximumWidth(200)
self.openButton.setMaximumHeight(100)
self.openButton.setShortcut(QtGui.QKeySequence("Ctrl+O"))
hbox2.addWidget(self.openButton)
self.openButtonhbox4 = QHBoxLayout()
self.openButton.setStyleSheet(
"background-color: transparent ;border-color: transparent")
self.saveButton = QPushButton('Save', self)
self.saveButton.setMaximumWidth(100)
self.saveButton.setMinimumHeight(100)
self.saveButton.setIconSize(QtCore.QSize(50, 50))
hbox2.addWidget(self.saveButton)
self.saveButton.setIcon(QtGui.QIcon(self.icon + "Saving.png"))
self.saveButton.setStyleSheet(
"background-color: transparent ;border-color: transparent")
vbox1.addLayout(hbox2)
hbox3 = QHBoxLayout()
grid_layout0 = QGridLayout()
self.checkBoxAutoSave = QCheckBox('AutoSave', self)
self.checkBoxAutoSave.setChecked(False)
grid_layout0.addWidget(self.checkBoxAutoSave, 0, 0)
self.checkBoxBg = QCheckBox('Bg substraction', self)
self.checkBoxBg.setChecked(False)
grid_layout0.addWidget(self.checkBoxBg, 1, 0)
self.optionAutoSave = QPushButton('Options', self)
hbox3.addLayout(grid_layout0)
self.optionAutoSave.setIcon(QtGui.QIcon(self.icon + "Settings.png"))
#self.optionAutoSave.setIconSize(QtCore.QSize(20,20))
hbox3.addWidget(self.optionAutoSave)
vbox1.addLayout(hbox3)
hbox8 = QHBoxLayout()
hbox4 = QHBoxLayout()
self.labelFileName = QLabel("File :")
self.labelFileName.setStyleSheet("font:15pt;")
self.labelFileName.setMinimumHeight(30)
self.labelFileName.setMaximumWidth(40)
hbox4.addWidget(self.labelFileName)
hbox42 = QHBoxLayout()
self.fileName = QLabel()
self.fileName.setStyleSheet("font:10pt")
self.fileName.setMaximumHeight(30)
self.fileName.setMaximumWidth(150)
hbox42.addWidget(self.fileName)
vbox1.addLayout(hbox4)
vbox1.addLayout(hbox42)
hbox5 = QHBoxLayout()
self.checkBoxPlot = QCheckBox('CROSS', self)
self.checkBoxPlot.setChecked(False)
hbox5.addWidget(self.checkBoxPlot)
hbox6 = QHBoxLayout()
self.label_Cross = QLabel()
#self.label_Cross.setMaximumHeight(20)
self.label_Cross.setMaximumWidth(150)
self.label_Cross.setStyleSheet("font:10pt")
hbox6.addWidget(self.label_Cross)
#hbox6.setSpacing(1)
vbox1.addLayout(hbox5)
vbox1.addLayout(hbox6)
self.ZoomLabel = QLabel('Zoom')
vbox1.addWidget(self.ZoomLabel)
self.checkBoxZoom = QSlider(Qt.Horizontal)
self.checkBoxZoom.setMaximumWidth(200)
self.checkBoxZoom.setMinimum(-5)
self.checkBoxZoom.setMaximum(100)
self.checkBoxZoom.setValue(-20)
vbox1.addWidget(self.checkBoxZoom)
self.checkBoxScale = QCheckBox('Auto Scale', self)
self.checkBoxScale.setChecked(True)
self.checkBoxScale.setMaximumWidth(100)
self.checkBoxColor = QCheckBox('Color', self)
self.checkBoxColor.setChecked(True)
self.checkBoxHist = QCheckBox('Hist', self)
self.checkBoxHist.setChecked(False)
self.maxGraphBox = QCheckBox('Max', self)
grid_layout = QGridLayout()
grid_layout.setVerticalSpacing(0)
grid_layout.setHorizontalSpacing(10)
grid_layout.addWidget(self.checkBoxScale, 0, 0)
grid_layout.addWidget(self.checkBoxColor, 1, 0)
grid_layout.addWidget(self.checkBoxHist, 0, 1)
#grid_layout.addWidget(self.checkBoxZoom, 1, 0)
grid_layout.addWidget(self.maxGraphBox, 1, 1)
hbox8.addLayout(grid_layout)
vbox1.addLayout(hbox8)
hbox9 = QHBoxLayout()
self.energyBox = QPushButton('&Encercled', self)
hbox9.addWidget(self.energyBox)
self.filtreBox = QPushButton('&Filters', self)
menu = QMenu()
menu.addAction('&Gaussian', self.Gauss)
menu.addAction('&Median', self.Median)
menu.addAction('&Origin', self.Orig)
self.filtreBox.setMenu(menu)
hbox9.addWidget(self.filtreBox)
vbox1.addLayout(hbox9)
hbox11 = QHBoxLayout()
self.PlotButton = QPushButton('Plot')
hbox11.addWidget(self.PlotButton)
self.MeasButton = QPushButton('Meas.')
hbox11.addWidget(self.MeasButton)
hbox10 = QHBoxLayout()
self.ligneButton = QPushButton('Line')
self.ligneButton.setIcon(QtGui.QIcon(self.icon + "ligne.jpeg"))
hbox10.addWidget(self.ligneButton)
self.rectangleButton = QPushButton('Rect')
self.rectangleButton.setIcon(QtGui.QIcon(self.icon + "rectangle.png"))
hbox10.addWidget(self.rectangleButton)
self.circleButton = QPushButton('Circle')
self.circleButton.setIcon(QtGui.QIcon(self.icon + "Red_circle.png"))
hbox10.addWidget(self.circleButton)
vbox1.addLayout(hbox11)
vbox1.addLayout(hbox10)
vbox1.addStretch(1)
self.winImage = pg.GraphicsLayoutWidget()
self.winImage.setContentsMargins(0, 0, 0, 0)
self.winImage.setAspectLocked(True)
self.winImage.setSizePolicy(QSizePolicy.Expanding,
QSizePolicy.Expanding)
self.winImage.ci.setContentsMargins(0, 0, 0, 0)
vbox2 = QVBoxLayout()
vbox2.addWidget(self.winImage)
vbox2.setContentsMargins(0, 0, 0, 0)
self.p1 = self.winImage.addPlot()
self.imh = pg.ImageItem()
self.p1.addItem(self.imh)
self.p1.setMouseEnabled(x=False, y=False)
self.p1.setContentsMargins(0, 0, 0, 0)
self.p1.setAspectLocked(True, ratio=1)
self.p1.showAxis('right', show=False)
self.p1.showAxis('top', show=False)
self.p1.showAxis('left', show=False)
self.p1.showAxis('bottom', show=False)
self.vLine = pg.InfiniteLine(angle=90, movable=False, pen='y')
self.hLine = pg.InfiniteLine(angle=0, movable=False, pen='y')
self.xc = 10
self.yc = 10
self.rx = 50
self.ry = 50
self.vLine.setPos(self.xc)
self.hLine.setPos(self.yc)
self.ro1 = pg.EllipseROI([self.xc, self.yc], [self.rx, self.ry],
pen='y',
movable=False,
maxBounds=QtCore.QRectF(
0, 0, self.rx, self.ry))
self.ro1.setPos([self.xc - (self.rx / 2), self.yc - (self.ry / 2)])
# text for fwhm on p1
self.textX = pg.TextItem(angle=-90)
self.textY = pg.TextItem()
#histogram
self.hist = pg.HistogramLUTItem()
self.hist.setImageItem(self.imh)
self.hist.autoHistogramRange()
self.hist.gradient.loadPreset('flame')
## XY graph
self.curve2 = pg.PlotCurveItem()
self.curve3 = pg.PlotCurveItem()
## main layout
hMainLayout = QHBoxLayout()
hMainLayout.addLayout(vbox2)
hMainLayout.addLayout(vbox1)
hMainLayout.setContentsMargins(1, 1, 1, 1)
hMainLayout.setSpacing(1)
hMainLayout.setStretch(10, 1)
self.setLayout(hMainLayout)
self.setContentsMargins(1, 1, 1, 1)
#self.plotLine=pg.LineSegmentROI(positions=((self.dimx/2-100,self.dimy/2),(self.dimx/2+100,self.dimy/2)), movable=True,angle=0,pen='b')
self.plotLine = pg.LineSegmentROI(positions=((0, 200), (200, 200)),
movable=True,
angle=0,
pen='w')
#self.plotLine=pg.PolyLineROI(positions=((0,200),(200,200),(300,200)), movable=True,angle=0,pen='w')
self.plotRect = pg.RectROI([self.xc, self.yc], [4 * self.rx, self.ry],
pen='g')
self.plotCercle = pg.CircleROI([self.xc, self.yc], [80, 80], pen='g')
