Example #1
0
class FigureWidget(QWidget):

    def __init__(   self, title=f"Figure", yRange=[-2, 6], \
                    xdata=[], ydata=[], \
                    color=20 \
                ):
        super().__init__()
        self.title = f'<h3> {title} </h3>'
        
        self.color = color
        self.x_data = np.array(xdata)
        self.y_data = np.array(ydata)
        self.y_min, self.y_max = yRange[0] , yRange[1]
        self.initFigure()

    
    def initFigure(self):

        # Configure Layout
        self.layout_model = QGridLayout()
        self.setLayout( self.layout_model )

        # Figure title is 1x3 (row x col) excel cell
        self.TITLE = QLabel(text=self.title)
        self.TITLE.setSizePolicy(QSizePolicy.Expanding, QSizePolicy.Expanding)
        self.TITLE.setAlignment(QtCoreQtClass.AlignCenter)
        self.layout_model.addWidget(self.TITLE, 0, 0, 1, 3)
        self.layout_model.setRowStretch(0, 1)

        #Figure size is 4x3 (row x col) excel cell
        self.Figure = PlotWidget()
        self.Figure.setYRange(self.y_min, self.y_max)
        self.graph = PlotCurveItem(pen = self.color )

        #plot initial data
        self.graph.setData(self.x_data, self.y_data)
        self.Figure.addItem(self.graph)

        # add to main figure widget & resize the grid layout
        self.layout_model.addWidget(self.Figure, 1, 0, 4, 3)
        for n in range(4):
            self.layout_model.setRowStretch(n+1, 7)
    
    def PlotData(self, x_data, y_data):
        self.x_data = x_data
        self.y_data = y_data

        self.graph.setData(self.x_data, self.y_data)
Example #2
0
class ProcessImage(QWidget):
    def __init__(self, parent=None, place='LI-Energy', prefix=_VACA_PREFIX):
        super().__init__(parent)
        self._place = place or 'LI-Energy'
        self._prefix = prefix
        self._select_experimental_setup()
        self.cen_x = None
        self.cen_y = None
        self.sigma_x = None
        self.sigma_y = None
        self.bg_ready = False
        self.bg = None
        self.nbg = 0
        self._setupUi()

    def _select_experimental_setup(self):
        pref = self._prefix
        if self._place.lower().startswith('li-ene'):
            prof = pref + ('-' if pref else '') + 'LA-BI:PRF4'
            self.conv_coefx = PV(prof + ':X:Gauss:Coef')
            self.conv_coefy = PV(prof + ':Y:Gauss:Coef')
            self.image_channel = prof + ':RAW:ArrayData'
            self.width_channel = prof + ':ROI:MaxSizeX_RBV'
            self.trig_name = 'LI-Fam:TI-Scrn'
        elif self._place.lower().startswith('li-emit'):
            prof = pref + ('-' if pref else '') + 'LA-BI:PRF5'
            self.conv_coefx = PV(prof + ':X:Gauss:Coef')
            self.conv_coefy = PV(prof + ':Y:Gauss:Coef')
            self.image_channel = prof + ':RAW:ArrayData'
            self.width_channel = prof + ':ROI:MaxSizeX_RBV'
            self.trig_name = 'LI-Fam:TI-Scrn'
        elif self._place.lower().startswith('tb-emit'):
            prof = _PVName('TB-02:DI-ScrnCam-2').substitute(prefix=pref)
            self.conv_coefx = PV(prof.substitute(propty='ImgScaleFactorX-RB'))
            self.conv_coefy = PV(prof.substitute(propty='ImgScaleFactorY-RB'))
            prof = _PVName('TB-02:DI-Scrn-2').substitute(prefix=pref)
            self.image_channel = prof.substitute(propty='ImgData-Mon')
            self.width_channel = prof.substitute(propty='ImgROIWidth-RB')
            self.trig_name = 'TB-Fam:TI-Scrn'
        else:
            raise Exception('Wrong value for "place".')

    def _setupUi(self):
        vl = QVBoxLayout(self)
        self.image_view = ImageView(
            self.process_image,
            parent=self,
            image_channel=self.image_channel,
            width_channel=self.width_channel)
        self.image_view.maxRedrawRate = 5
        self.image_view.readingOrder = self.image_view.Clike
        self.plt_roi = PlotCurveItem([0, 0, 400, 400, 0], [0, 400, 400, 0, 0])
        pen = mkPen()
        pen.setColor(QColor('red'))
        pen.setWidth(1)
        self.plt_roi.setPen(pen)
        self.image_view.addItem(self.plt_roi)
        self.plt_fit_x = PlotCurveItem([0, 0], [0, 400])
        self.plt_fit_y = PlotCurveItem([0, 0], [0, 400])
        self.plt_his_x = PlotCurveItem([0, 0], [0, 400])
        self.plt_his_y = PlotCurveItem([0, 0], [0, 400])
        pen = mkPen()
        pen.setColor(QColor('yellow'))
        self.plt_his_x.setPen(pen)
        self.plt_his_y.setPen(pen)
        self.image_view.addItem(self.plt_fit_x)
        self.image_view.addItem(self.plt_fit_y)
        self.image_view.addItem(self.plt_his_x)
        self.image_view.addItem(self.plt_his_y)
        vl.addWidget(self.image_view)

        gb_trig = QGroupBox('Trigger', self)
        vl.addWidget(gb_trig)
        gb_trig.setLayout(QVBoxLayout())
        gb_trig.layout().addWidget(HLTriggerSimple(
            gb_trig, device=self.trig_name, prefix=self._prefix))

        gb_pos = QGroupBox('Position [mm]', self)
        vl.addWidget(gb_pos)
        hl = QHBoxLayout(gb_pos)
        fl = QFormLayout()
        hl.addLayout(fl)
        self.cbox_method = QComboBox(gb_pos)
        self.cbox_method.addItem('Gauss Fit')
        self.cbox_method.addItem('Moments')
        fl.addRow(QLabel('Method', gb_pos), self.cbox_method)
        self.spbox_roi_size_x = QSpinBoxPlus(gb_pos)
        self.spbox_roi_size_y = QSpinBoxPlus(gb_pos)
        self.spbox_roi_center_x = QSpinBoxPlus(gb_pos)
        self.spbox_roi_center_y = QSpinBoxPlus(gb_pos)
        self.spbox_roi_size_x.setKeyboardTracking(False)
        self.spbox_roi_size_y.setKeyboardTracking(False)
        self.spbox_roi_center_x.setKeyboardTracking(False)
        self.spbox_roi_center_y.setKeyboardTracking(False)
        self.spbox_roi_size_x.setMaximum(2448)
        self.spbox_roi_size_y.setMaximum(2050)
        self.spbox_roi_center_x.setMaximum(2448)
        self.spbox_roi_center_y.setMaximum(2050)
        self.spbox_roi_size_x.setValue(300)
        self.spbox_roi_size_y.setValue(400)
        self.spbox_roi_center_x.setValue(500)
        self.spbox_roi_center_y.setValue(500)
        fl.addRow(QLabel('ROI Size X', gb_pos), self.spbox_roi_size_x)
        fl.addRow(QLabel('ROI Size Y', gb_pos), self.spbox_roi_size_y)
        self.cbbox_auto_center = QCheckBox('Automatic Centering', gb_pos)
        self.cbbox_auto_center.clicked.connect(self.cbbox_auto_center_clicked)
        self.cbbox_auto_center.setChecked(True)
        fl.addRow(self.cbbox_auto_center)
        fl.addRow(QLabel('ROI Center X', gb_pos), self.spbox_roi_center_x)
        fl.addRow(QLabel('ROI Center Y', gb_pos), self.spbox_roi_center_y)
        self.spbox_img_max = QSpinBoxPlus(gb_pos)
        self.spbox_img_max.setKeyboardTracking(False)
        self.spbox_img_max.setMinimum(0)
        self.spbox_img_max.setMaximum(2448)
        self.spbox_img_max.setValue(0)
        fl.addRow(QLabel('Max. Pixel Val.', gb_pos), self.spbox_img_max)
        self.cbbox_acq_bg = QCheckBox('Acquire Background', gb_pos)
        self.cbbox_acq_bg.clicked.connect(self.cbbox_acq_bg_checked)
        fl.addRow(self.cbbox_acq_bg)
        self.pb_reset_bg = QPushButton('Reset BG', gb_pos)
        self.pb_reset_bg.clicked.connect(self.pb_reset_bg_clicked)
        fl.addRow(self.pb_reset_bg)
        fl = QFormLayout()
        hl.addLayout(fl)
        self.lb_xave = QLabel('0', gb_pos)
        self.lb_yave = QLabel('0', gb_pos)
        self.lb_xstd = QLabel('0', gb_pos)
        self.lb_ystd = QLabel('0', gb_pos)
        fl.addRow(QLabel('Average Position', gb_pos))
        fl.addRow(QLabel('x = ', gb_pos), self.lb_xave)
        fl.addRow(QLabel('y = ', gb_pos), self.lb_yave)
        fl.addRow(QLabel('Beam Size', gb_pos))
        fl.addRow(QLabel('x = ', gb_pos), self.lb_xstd)
        fl.addRow(QLabel('y = ', gb_pos), self.lb_ystd)

        hl.setSpacing(12)
        hl.setStretch(0, 1)
        hl.setStretch(1, 1)

    def cbbox_auto_center_clicked(self, clicked):
        self.spbox_roi_center_x.setEnabled(not clicked)
        self.spbox_roi_center_y.setEnabled(not clicked)

    def pb_reset_bg_clicked(self, clicked=False):
        self.bg_ready = False
        self.bg = None
        self.nbg = 0

    def cbbox_acq_bg_checked(self, check):
        if check:
            self.pb_reset_bg_clicked()
        else:
            if self.bg is not None:
                self.bg /= self.nbg
                self.bg_ready = True

    def calc_roi(self, image):
        proj_x = image.sum(axis=0)
        proj_y = image.sum(axis=1)
        axis_x = np.arange(image.shape[1])
        axis_y = np.arange(image.shape[0])

        if self.cbbox_auto_center.isChecked():
            cen_x, _ = _calc_moments(axis_x, proj_x)
            cen_y, _ = _calc_moments(axis_y, proj_y)
        else:
            cen_x = self.spbox_roi_center_x.value()
            cen_y = self.spbox_roi_center_y.value()

        roi_size_x = self.spbox_roi_size_x.value()
        roi_size_y = self.spbox_roi_size_y.value()
        strt_x, end_x = np.array([-1, 1])*roi_size_x + int(cen_x)
        strt_y, end_y = np.array([-1, 1])*roi_size_y + int(cen_y)
        strt_x = max(strt_x, 0)
        strt_y = max(strt_y, 0)
        end_x = min(end_x, image.shape[1])
        end_y = min(end_y, image.shape[0])
        self.plt_roi.setData(
            np.array([strt_x, strt_x, end_x, end_x, strt_x]),
            np.array([strt_y, end_y, end_y, strt_y, strt_y]))

        image = image[strt_y:end_y, strt_x:end_x]
        proj_x = image.sum(axis=0)
        proj_y = image.sum(axis=1)
        axis_x = axis_x[strt_x:end_x]
        axis_y = axis_y[strt_y:end_y]
        return proj_x, proj_y, axis_x, axis_y

    def process_image(self, image, wid):
        if wid <= 0:
            return image
        try:
            image = image.reshape((-1, wid))
        except (TypeError, ValueError, AttributeError):
            return image
        if self.cbbox_acq_bg.isChecked():
            if self.bg is None:
                self.bg = np.array(image, dtype=float)
            else:
                self.bg += np.array(image, dtype=float)
            self.nbg += 1
            return image
        if self.bg_ready:
            image -= np.array(self.bg, dtype=image.dtype)
            b = np.where(image < 0)
            image[b] = 0

        maxi = self.spbox_img_max.value()
        if maxi > 0:
            b = np.where(image > maxi)
            self.image_view.colorMapMax = maxi
            image[b] = maxi

        proj_x, proj_y, axis_x, axis_y = self.calc_roi(image)
        x_max = max(proj_x)
        y_max = max(proj_y)
        if self.cbox_method.currentIndex():
            cen_x, std_x = _calc_moments(axis_x, proj_x)
            cen_y, std_y = _calc_moments(axis_y, proj_y)
            amp_x = x_max
            amp_y = y_max
            off_x = 0
            off_y = 0
        else:
            amp_x, cen_x, std_x, off_x = _fit_gaussian(axis_x, proj_x)
            amp_y, cen_y, std_y, off_y = _fit_gaussian(axis_y, proj_y)
        std_x = abs(std_x)
        std_y = abs(std_y)
        yd = _gaussian(axis_x, amp_x, cen_x, std_x, off_x)/x_max*400
        self.plt_fit_x.setData(axis_x, yd + axis_y[0])
        self.plt_his_x.setData(axis_x, proj_x/x_max*400 + axis_y[0])

        yd = _gaussian(axis_y, amp_y, cen_y, std_y, off_y)/y_max*400
        self.plt_fit_y.setData(yd + axis_x[0], axis_y)
        self.plt_his_y.setData(proj_y/y_max*400 + axis_x[0], axis_y)

        offset_x = image.shape[1]/2
        offset_y = image.shape[0]/2
        self.lb_xave.setText('{0:4d}'.format(int(cen_x or 0)))
        self.lb_yave.setText('{0:4d}'.format(int(cen_y or 0)))
        self.lb_xstd.setText('{0:4d}'.format(int(std_x or 0)))
        self.lb_ystd.setText('{0:4d}'.format(int(std_y or 0)))

        coefx = self.conv_coefx.value
        coefy = self.conv_coefy.value
        if coefx is None or coefy is None:
            return

        cen_x -= offset_x
        cen_y -= offset_y
        self.cen_x = cen_x * coefx*1e-3  # transform to meter
        self.cen_y = cen_y * coefy*1e-3
        self.sigma_x = std_x * coefx*1e-3
        self.sigma_y = std_y * coefy*1e-3

        return image

    def get_params(self):
        return self.cen_x, self.sigma_x, self.cen_y, self.sigma_y
Example #3
0
class SiriusSpectrogramView(GraphicsLayoutWidget, PyDMWidget, PyDMColorMap,
                            ReadingOrder):
    """
    A SpectrogramView with support for Channels and more from PyDM.

    If there is no :attr:`channelWidth` it is possible to define the width of
    the image with the :attr:`width` property.

    The :attr:`normalizeData` property defines if the colors of the images are
    relative to the :attr:`colorMapMin` and :attr:`colorMapMax` property or to
    the minimum and maximum values of the image.

    Use the :attr:`newImageSignal` to hook up to a signal that is emitted when
    a new image is rendered in the widget.

    Parameters
    ----------
    parent : QWidget
        The parent widget for the Label
    image_channel : str, optional
        The channel to be used by the widget for the image data.
    xaxis_channel : str, optional
        The channel to be used by the widget to receive the image width
        (if ReadingOrder == Clike), and to set the xaxis values
    yaxis_channel : str, optional
        The channel to be used by the widget to receive the image width
        (if ReadingOrder == Fortranlike), and to set the yaxis values
    background : QColor, optional
        QColor to set the background color of the GraphicsView
    """

    Q_ENUMS(PyDMColorMap)
    Q_ENUMS(ReadingOrder)

    color_maps = cmaps

    def __init__(self,
                 parent=None,
                 image_channel=None,
                 xaxis_channel=None,
                 yaxis_channel=None,
                 roioffsetx_channel=None,
                 roioffsety_channel=None,
                 roiwidth_channel=None,
                 roiheight_channel=None,
                 title='',
                 background='w',
                 image_width=0,
                 image_height=0):
        """Initialize widget."""
        GraphicsLayoutWidget.__init__(self, parent)
        PyDMWidget.__init__(self)
        self.thread = None
        self._imagechannel = None
        self._xaxischannel = None
        self._yaxischannel = None
        self._roioffsetxchannel = None
        self._roioffsetychannel = None
        self._roiwidthchannel = None
        self._roiheightchannel = None
        self._channels = 7 * [
            None,
        ]
        self.image_waveform = np.zeros(0)
        self._image_width = image_width if not xaxis_channel else 0
        self._image_height = image_height if not yaxis_channel else 0
        self._roi_offsetx = 0
        self._roi_offsety = 0
        self._roi_width = 0
        self._roi_height = 0
        self._normalize_data = False
        self._auto_downsample = True
        self._last_yaxis_data = None
        self._last_xaxis_data = None
        self._auto_colorbar_lims = True
        self.format_tooltip = '{0:.4g}, {1:.4g}'

        # ViewBox and imageItem.
        self._view = ViewBox()
        self._image_item = ImageItem()
        self._view.addItem(self._image_item)

        # ROI
        self.ROICurve = PlotCurveItem([0, 0, 0, 0, 0], [0, 0, 0, 0, 0])
        self.ROIColor = QColor('red')
        pen = mkPen()
        pen.setColor(QColor('transparent'))
        pen.setWidth(1)
        self.ROICurve.setPen(pen)
        self._view.addItem(self.ROICurve)

        # Axis.
        self.xaxis = AxisItem('bottom')
        self.xaxis.setPen(QColor(0, 0, 0))
        if not xaxis_channel:
            self.xaxis.setVisible(False)
        self.yaxis = AxisItem('left')
        self.yaxis.setPen(QColor(0, 0, 0))
        if not yaxis_channel:
            self.yaxis.setVisible(False)

        # Colorbar legend.
        self.colorbar = _GradientLegend()

        # Title.
        start_row = 0
        if title:
            self.title = LabelItem(text=title, color='#000000')
            self.addItem(self.title, 0, 0, 1, 3)
            start_row = 1

        # Set layout.
        self.addItem(self._view, start_row, 1)
        self.addItem(self.yaxis, start_row, 0)
        self.addItem(self.colorbar, start_row, 2)
        self.addItem(self.xaxis, start_row + 1, 1)
        self.setBackground(background)
        self.ci.layout.setColumnSpacing(0, 0)
        self.ci.layout.setRowSpacing(start_row, 0)

        # Set color map limits.
        self.cm_min = 0.0
        self.cm_max = 255.0

        # Set default reading order of numpy array data to Clike.
        self._reading_order = ReadingOrder.Clike

        # Make a right-click menu for changing the color map.
        self.cm_group = QActionGroup(self)
        self.cmap_for_action = {}
        for cm in self.color_maps:
            action = self.cm_group.addAction(cmap_names[cm])
            action.setCheckable(True)
            self.cmap_for_action[action] = cm

        # Set the default colormap.
        self._cm_colors = None
        self.colorMap = PyDMColorMap.Inferno

        # Setup the redraw timer.
        self.needs_redraw = False
        self.redraw_timer = QTimer(self)
        self.redraw_timer.timeout.connect(self.redrawImage)
        self._redraw_rate = 30
        self.maxRedrawRate = self._redraw_rate
        self.newImageSignal = self._image_item.sigImageChanged

        # Set Channels.
        self.imageChannel = image_channel
        self.xAxisChannel = xaxis_channel
        self.yAxisChannel = yaxis_channel
        self.ROIOffsetXChannel = roioffsetx_channel
        self.ROIOffsetYChannel = roioffsety_channel
        self.ROIWidthChannel = roiwidth_channel
        self.ROIHeightChannel = roiheight_channel

    # --- Context menu ---
    def widget_ctx_menu(self):
        """
        Fetch the Widget specific context menu.

        It will be populated with additional tools by `assemble_tools_menu`.

        Returns
        -------
        QMenu or None
            If the return of this method is None a new QMenu will be created by
            `assemble_tools_menu`.
        """
        self.menu = ViewBoxMenu(self._view)
        cm_menu = self.menu.addMenu("Color Map")
        for act in self.cmap_for_action.keys():
            cm_menu.addAction(act)
        cm_menu.triggered.connect(self._changeColorMap)
        return self.menu

    # --- Colormap methods ---
    def _changeColorMap(self, action):
        """
        Method invoked by the colormap Action Menu.

        Changes the current colormap used to render the image.

        Parameters
        ----------
        action : QAction
        """
        self.colorMap = self.cmap_for_action[action]

    @Property(float)
    def colorMapMin(self):
        """
        Minimum value for the colormap.

        Returns
        -------
        float
        """
        return self.cm_min

    @colorMapMin.setter
    @Slot(float)
    def colorMapMin(self, new_min):
        """
        Set the minimum value for the colormap.

        Parameters
        ----------
        new_min : float
        """
        if self.cm_min != new_min:
            self.cm_min = new_min
            if self.cm_min > self.cm_max:
                self.cm_max = self.cm_min

    @Property(float)
    def colorMapMax(self):
        """
        Maximum value for the colormap.

        Returns
        -------
        float
        """
        return self.cm_max

    @colorMapMax.setter
    @Slot(float)
    def colorMapMax(self, new_max):
        """
        Set the maximum value for the colormap.

        Parameters
        ----------
        new_max : float
        """
        if self.cm_max != new_max:
            self.cm_max = new_max
            if self.cm_max < self.cm_min:
                self.cm_min = self.cm_max

    def setColorMapLimits(self, mn, mx):
        """
        Set the limit values for the colormap.

        Parameters
        ----------
        mn : int
            The lower limit
        mx : int
            The upper limit
        """
        if mn >= mx:
            return
        self.cm_max = mx
        self.cm_min = mn

    @Property(PyDMColorMap)
    def colorMap(self):
        """
        Return the color map used by the SpectrogramView.

        Returns
        -------
        PyDMColorMap
        """
        return self._colormap

    @colorMap.setter
    def colorMap(self, new_cmap):
        """
        Set the color map used by the SpectrogramView.

        Parameters
        -------
        new_cmap : PyDMColorMap
        """
        self._colormap = new_cmap
        self._cm_colors = self.color_maps[new_cmap]
        self.setColorMap()
        for action in self.cm_group.actions():
            if self.cmap_for_action[action] == self._colormap:
                action.setChecked(True)
            else:
                action.setChecked(False)

    def setColorMap(self, cmap=None):
        """
        Update the image colormap.

        Parameters
        ----------
        cmap : ColorMap
        """
        if not cmap:
            if not self._cm_colors.any():
                return
            # Take default values
            pos = np.linspace(0.0, 1.0, num=len(self._cm_colors))
            cmap = ColorMap(pos, self._cm_colors)
        self._view.setBackgroundColor(cmap.map(0))
        lut = cmap.getLookupTable(0.0, 1.0, alpha=False)
        self.colorbar.setIntColorScale(colors=lut)
        self._image_item.setLookupTable(lut)

    # --- Connection Slots ---
    @Slot(bool)
    def image_connection_state_changed(self, conn):
        """
        Callback invoked when the Image Channel connection state is changed.

        Parameters
        ----------
        conn : bool
            The new connection state.
        """
        if conn:
            self.redraw_timer.start()
        else:
            self.redraw_timer.stop()

    @Slot(bool)
    def yaxis_connection_state_changed(self, connected):
        """
        Callback invoked when the TimeAxis Channel connection state is changed.

        Parameters
        ----------
        conn : bool
            The new connection state.
        """
        self._timeaxis_connected = connected

    @Slot(bool)
    def roioffsetx_connection_state_changed(self, conn):
        """
        Run when the ROIOffsetX Channel connection state changes.

        Parameters
        ----------
        conn : bool
            The new connection state.

        """
        if not conn:
            self._roi_offsetx = 0

    @Slot(bool)
    def roioffsety_connection_state_changed(self, conn):
        """
        Run when the ROIOffsetY Channel connection state changes.

        Parameters
        ----------
        conn : bool
            The new connection state.

        """
        if not conn:
            self._roi_offsety = 0

    @Slot(bool)
    def roiwidth_connection_state_changed(self, conn):
        """
        Run when the ROIWidth Channel connection state changes.

        Parameters
        ----------
        conn : bool
            The new connection state.

        """
        if not conn:
            self._roi_width = 0

    @Slot(bool)
    def roiheight_connection_state_changed(self, conn):
        """
        Run when the ROIHeight Channel connection state changes.

        Parameters
        ----------
        conn : bool
            The new connection state.

        """
        if not conn:
            self._roi_height = 0

    # --- Value Slots ---
    @Slot(np.ndarray)
    def image_value_changed(self, new_image):
        """
        Callback invoked when the Image Channel value is changed.

        We try to do as little as possible in this method, because it
        gets called every time the image channel updates, which might
        be extremely often.  Basically just store the data, and set
        a flag requesting that the image be redrawn.

        Parameters
        ----------
        new_image : np.ndarray
            The new image data.  This can be a flat 1D array, or a 2D array.
        """
        if new_image is None or new_image.size == 0:
            return
        logging.debug("SpectrogramView Received New Image: Needs Redraw->True")
        self.image_waveform = new_image
        self.needs_redraw = True
        if not self._image_height and self._image_width:
            self._image_height = new_image.size / self._image_width
        elif not self._image_width and self._image_height:
            self._image_width = new_image.size / self._image_height

    @Slot(np.ndarray)
    @Slot(float)
    def xaxis_value_changed(self, new_array):
        """
        Callback invoked when the Image Width Channel value is changed.

        Parameters
        ----------
        new_array : np.ndarray
            The new x axis array
        """
        if new_array is None:
            return
        if isinstance(new_array, float):
            new_array = np.array([
                new_array,
            ])
        self._last_xaxis_data = new_array
        if self._reading_order == self.Clike:
            self._image_width = new_array.size
        else:
            self._image_height = new_array.size
        self.needs_redraw = True

    @Slot(np.ndarray)
    @Slot(float)
    def yaxis_value_changed(self, new_array):
        """
        Callback invoked when the TimeAxis Channel value is changed.

        Parameters
        ----------
        new_array : np.array
            The new y axis array
        """
        if new_array is None:
            return
        if isinstance(new_array, float):
            new_array = np.array([
                new_array,
            ])
        self._last_yaxis_data = new_array
        if self._reading_order == self.Fortranlike:
            self._image_width = new_array.size
        else:
            self._image_height = new_array.size
        self.needs_redraw = True

    @Slot(int)
    def roioffsetx_value_changed(self, new_offset):
        """
        Run when the ROIOffsetX Channel value changes.

        Parameters
        ----------
        new_offsetx : int
            The new image ROI horizontal offset

        """
        if new_offset is None:
            return
        self._roi_offsetx = new_offset
        self.redrawROI()

    @Slot(int)
    def roioffsety_value_changed(self, new_offset):
        """
        Run when the ROIOffsetY Channel value changes.

        Parameters
        ----------
        new_offsety : int
            The new image ROI vertical offset

        """
        if new_offset is None:
            return
        self._roi_offsety = new_offset
        self.redrawROI()

    @Slot(int)
    def roiwidth_value_changed(self, new_width):
        """
        Run when the ROIWidth Channel value changes.

        Parameters
        ----------
        new_width : int
            The new image ROI width

        """
        if new_width is None:
            return
        self._roi_width = int(new_width)
        self.redrawROI()

    @Slot(int)
    def roiheight_value_changed(self, new_height):
        """
        Run when the ROIHeight Channel value changes.

        Parameters
        ----------
        new_height : int
            The new image ROI height

        """
        if new_height is None:
            return
        self._roi_height = int(new_height)
        self.redrawROI()

    # --- Image update methods ---
    def process_image(self, image):
        """
        Boilerplate method.

        To be used by applications in order to add calculations and also modify
        the image before it is displayed at the widget.

        .. warning::
           This code runs in a separated QThread so it **MUST** not try to
           write to QWidgets.

        Parameters
        ----------
        image : np.ndarray
            The Image Data as a 2D numpy array

        Returns
        -------
        np.ndarray
            The Image Data as a 2D numpy array after processing.
        """
        return image

    def redrawImage(self):
        """
        Set the image data into the ImageItem, if needed.

        If necessary, reshape the image to 2D first.
        """
        if self.thread is not None and not self.thread.isFinished():
            logger.warning(
                "Image processing has taken longer than the refresh rate.")
            return
        self.thread = SpectrogramUpdateThread(self)
        self.thread.updateSignal.connect(self._updateDisplay)
        logging.debug("SpectrogramView RedrawImage Thread Launched")
        self.thread.start()

    @Slot(list)
    def _updateDisplay(self, data):
        logging.debug("SpectrogramView Update Display with new image")

        # Update axis
        if self._last_xaxis_data is not None:
            szx = self._last_xaxis_data.size
            xMin = self._last_xaxis_data.min()
            xMax = self._last_xaxis_data.max()
        else:
            szx = self.imageWidth if self.readingOrder == self.Clike \
                else self.imageHeight
            xMin = 0
            xMax = szx

        if self._last_yaxis_data is not None:
            szy = self._last_yaxis_data.size
            yMin = self._last_yaxis_data.min()
            yMax = self._last_yaxis_data.max()
        else:
            szy = self.imageHeight if self.readingOrder == self.Clike \
                else self.imageWidth
            yMin = 0
            yMax = szy

        self.xaxis.setRange(xMin, xMax)
        self.yaxis.setRange(yMin, yMax)
        self._view.setLimits(xMin=0,
                             xMax=szx,
                             yMin=0,
                             yMax=szy,
                             minXRange=szx,
                             maxXRange=szx,
                             minYRange=szy,
                             maxYRange=szy)

        # Update image
        if self.autoSetColorbarLims:
            self.colorbar.setLimits(data)
        mini, maxi = data[0], data[1]
        img = data[2]
        self._image_item.setLevels([mini, maxi])
        self._image_item.setImage(img,
                                  autoLevels=False,
                                  autoDownsample=self.autoDownsample)

    # ROI update methods
    def redrawROI(self):
        startx = self._roi_offsetx
        endx = self._roi_offsetx + self._roi_width
        starty = self._roi_offsety
        endy = self._roi_offsety + self._roi_height
        self.ROICurve.setData([startx, startx, endx, endx, startx],
                              [starty, endy, endy, starty, starty])

    def showROI(self, show):
        """Set ROI visibility."""
        pen = mkPen()
        if show:
            pen.setColor(self.ROIColor)
        else:
            pen.setColor(QColor('transparent'))
        self.ROICurve.setPen(pen)

    # --- Properties ---
    @Property(bool)
    def autoDownsample(self):
        """
        Return if we should or not apply the autoDownsample option.

        Return
        ------
        bool
        """
        return self._auto_downsample

    @autoDownsample.setter
    def autoDownsample(self, new_value):
        """
        Whether we should or not apply the autoDownsample option.

        Parameters
        ----------
        new_value: bool
        """
        if new_value != self._auto_downsample:
            self._auto_downsample = new_value

    @Property(bool)
    def autoSetColorbarLims(self):
        """
        Return if we should or not auto set colorbar limits.

        Return
        ------
        bool
        """
        return self._auto_colorbar_lims

    @autoSetColorbarLims.setter
    def autoSetColorbarLims(self, new_value):
        """
        Whether we should or not auto set colorbar limits.

        Parameters
        ----------
        new_value: bool
        """
        if new_value != self._auto_colorbar_lims:
            self._auto_colorbar_lims = new_value

    @Property(int)
    def imageWidth(self):
        """
        Return the width of the image.

        Return
        ------
        int
        """
        return self._image_width

    @imageWidth.setter
    def imageWidth(self, new_width):
        """
        Set the width of the image.

        Can be overridden by :attr:`xAxisChannel` and :attr:`yAxisChannel`.

        Parameters
        ----------
        new_width: int
        """
        boo = self._image_width != int(new_width)
        boo &= not self._xaxischannel
        boo &= not self._yaxischannel
        if boo:
            self._image_width = int(new_width)

    @Property(int)
    def imageHeight(self):
        """
        Return the height of the image.

        Return
        ------
        int
        """
        return self._image_height

    @Property(int)
    def ROIOffsetX(self):
        """
        Return the ROI offset in X axis in pixels.

        Return
        ------
        int
        """
        return self._roi_offsetx

    @ROIOffsetX.setter
    def ROIOffsetX(self, new_offset):
        """
        Set the ROI offset in X axis in pixels.

        Can be overridden by :attr:`ROIOffsetXChannel`.

        Parameters
        ----------
        new_offset: int
        """
        if new_offset is None:
            return
        boo = self._roi_offsetx != int(new_offset)
        boo &= not self._roioffsetxchannel
        if boo:
            self._roi_offsetx = int(new_offset)
            self.redrawROI()

    @Property(int)
    def ROIOffsetY(self):
        """
        Return the ROI offset in Y axis in pixels.

        Return
        ------
        int
        """
        return self._roi_offsety

    @ROIOffsetY.setter
    def ROIOffsetY(self, new_offset):
        """
        Set the ROI offset in Y axis in pixels.

        Can be overridden by :attr:`ROIOffsetYChannel`.

        Parameters
        ----------
        new_offset: int
        """
        if new_offset is None:
            return
        boo = self._roi_offsety != int(new_offset)
        boo &= not self._roioffsetychannel
        if boo:
            self._roi_offsety = int(new_offset)
            self.redrawROI()

    @Property(int)
    def ROIWidth(self):
        """
        Return the ROI width in pixels.

        Return
        ------
        int
        """
        return self._roi_width

    @ROIWidth.setter
    def ROIWidth(self, new_width):
        """
        Set the ROI width in pixels.

        Can be overridden by :attr:`ROIWidthChannel`.

        Parameters
        ----------
        new_width: int
        """
        if new_width is None:
            return
        boo = self._roi_width != int(new_width)
        boo &= not self._roiwidthchannel
        if boo:
            self._roi_width = int(new_width)
            self.redrawROI()

    @Property(int)
    def ROIHeight(self):
        """
        Return the ROI height in pixels.

        Return
        ------
        int
        """
        return self._roi_height

    @ROIHeight.setter
    def ROIHeight(self, new_height):
        """
        Set the ROI height in pixels.

        Can be overridden by :attr:`ROIHeightChannel`.

        Parameters
        ----------
        new_height: int
        """
        if new_height is None:
            return
        boo = self._roi_height != int(new_height)
        boo &= not self._roiheightchannel
        if boo:
            self._roi_height = int(new_height)
            self.redrawROI()

    @Property(bool)
    def normalizeData(self):
        """
        Return True if the colors are relative to data maximum and minimum.

        Returns
        -------
        bool
        """
        return self._normalize_data

    @normalizeData.setter
    @Slot(bool)
    def normalizeData(self, new_norm):
        """
        Define if the colors are relative to minimum and maximum of the data.

        Parameters
        ----------
        new_norm: bool
        """
        if self._normalize_data != new_norm:
            self._normalize_data = new_norm

    @Property(ReadingOrder)
    def readingOrder(self):
        """
        Return the reading order of the :attr:`imageChannel` array.

        Returns
        -------
        ReadingOrder
        """
        return self._reading_order

    @readingOrder.setter
    def readingOrder(self, order):
        """
        Set reading order of the :attr:`imageChannel` array.

        Parameters
        ----------
        order: ReadingOrder
        """
        if self._reading_order != order:
            self._reading_order = order

        if order == self.Clike:
            if self._last_xaxis_data is not None:
                self._image_width = self._last_xaxis_data.size
            if self._last_yaxis_data is not None:
                self._image_height = self._last_yaxis_data.size
        elif order == self.Fortranlike:
            if self._last_yaxis_data is not None:
                self._image_width = self._last_yaxis_data.size
            if self._last_xaxis_data is not None:
                self._image_height = self._last_xaxis_data.size

    @Property(int)
    def maxRedrawRate(self):
        """
        The maximum rate (in Hz) at which the plot will be redrawn.

        The plot will not be redrawn if there is not new data to draw.

        Returns
        -------
        int
        """
        return self._redraw_rate

    @maxRedrawRate.setter
    def maxRedrawRate(self, redraw_rate):
        """
        The maximum rate (in Hz) at which the plot will be redrawn.

        The plot will not be redrawn if there is not new data to draw.

        Parameters
        -------
        redraw_rate : int
        """
        self._redraw_rate = redraw_rate
        self.redraw_timer.setInterval(int((1.0 / self._redraw_rate) * 1000))

    # --- Events rederivations ---
    def keyPressEvent(self, ev):
        """Handle keypress events."""
        return

    def mouseMoveEvent(self, ev):
        if not self._image_item.width() or not self._image_item.height():
            super().mouseMoveEvent(ev)
            return
        pos = ev.pos()
        posaux = self._image_item.mapFromDevice(ev.pos())
        if posaux.x() < 0 or posaux.x() >= self._image_item.width() or \
                posaux.y() < 0 or posaux.y() >= self._image_item.height():
            super().mouseMoveEvent(ev)
            return

        pos_scene = self._view.mapSceneToView(pos)
        x = round(pos_scene.x())
        y = round(pos_scene.y())

        if self.xAxisChannel and self._last_xaxis_data is not None:
            maxx = len(self._last_xaxis_data) - 1
            x = x if x < maxx else maxx
            valx = self._last_xaxis_data[x]
        else:
            valx = x

        if self.yAxisChannel and self._last_yaxis_data is not None:
            maxy = len(self._last_yaxis_data) - 1
            y = y if y < maxy else maxy
            valy = self._last_yaxis_data[y]
        else:
            valy = y

        txt = self.format_tooltip.format(valx, valy)
        QToolTip.showText(self.mapToGlobal(pos), txt, self, self.geometry(),
                          5000)
        super().mouseMoveEvent(ev)

    # --- Channels ---
    @Property(str)
    def imageChannel(self):
        """
        The channel address in use for the image data .

        Returns
        -------
        str
            Channel address
        """
        if self._imagechannel:
            return str(self._imagechannel.address)
        else:
            return ''

    @imageChannel.setter
    def imageChannel(self, value):
        """
        The channel address in use for the image data .

        Parameters
        ----------
        value : str
            Channel address
        """
        if self._imagechannel != value:
            # Disconnect old channel
            if self._imagechannel:
                self._imagechannel.disconnect()
            # Create and connect new channel
            self._imagechannel = PyDMChannel(
                address=value,
                connection_slot=self.image_connection_state_changed,
                value_slot=self.image_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[0] = self._imagechannel
            self._imagechannel.connect()

    @Property(str)
    def xAxisChannel(self):
        """
        The channel address in use for the x-axis of image.

        Returns
        -------
        str
            Channel address
        """
        if self._xaxischannel:
            return str(self._xaxischannel.address)
        else:
            return ''

    @xAxisChannel.setter
    def xAxisChannel(self, value):
        """
        The channel address in use for the x-axis of image.

        Parameters
        ----------
        value : str
            Channel address
        """
        if self._xaxischannel != value:
            # Disconnect old channel
            if self._xaxischannel:
                self._xaxischannel.disconnect()
            # Create and connect new channel
            self._xaxischannel = PyDMChannel(
                address=value,
                connection_slot=self.connectionStateChanged,
                value_slot=self.xaxis_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[1] = self._xaxischannel
            self._xaxischannel.connect()

    @Property(str)
    def yAxisChannel(self):
        """
        The channel address in use for the time axis.

        Returns
        -------
        str
            Channel address
        """
        if self._yaxischannel:
            return str(self._yaxischannel.address)
        else:
            return ''

    @yAxisChannel.setter
    def yAxisChannel(self, value):
        """
        The channel address in use for the time axis.

        Parameters
        ----------
        value : str
            Channel address
        """
        if self._yaxischannel != value:
            # Disconnect old channel
            if self._yaxischannel:
                self._yaxischannel.disconnect()
            # Create and connect new channel
            self._yaxischannel = PyDMChannel(
                address=value,
                connection_slot=self.yaxis_connection_state_changed,
                value_slot=self.yaxis_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[2] = self._yaxischannel
            self._yaxischannel.connect()

    @Property(str)
    def ROIOffsetXChannel(self):
        """
        Return the channel address in use for the image ROI horizontal offset.

        Returns
        -------
        str
            Channel address

        """
        if self._roioffsetxchannel:
            return str(self._roioffsetxchannel.address)
        else:
            return ''

    @ROIOffsetXChannel.setter
    def ROIOffsetXChannel(self, value):
        """
        Return the channel address in use for the image ROI horizontal offset.

        Parameters
        ----------
        value : str
            Channel address

        """
        if self._roioffsetxchannel != value:
            # Disconnect old channel
            if self._roioffsetxchannel:
                self._roioffsetxchannel.disconnect()
            # Create and connect new channel
            self._roioffsetxchannel = PyDMChannel(
                address=value,
                connection_slot=self.roioffsetx_connection_state_changed,
                value_slot=self.roioffsetx_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[3] = self._roioffsetxchannel
            self._roioffsetxchannel.connect()

    @Property(str)
    def ROIOffsetYChannel(self):
        """
        Return the channel address in use for the image ROI vertical offset.

        Returns
        -------
        str
            Channel address

        """
        if self._roioffsetychannel:
            return str(self._roioffsetychannel.address)
        else:
            return ''

    @ROIOffsetYChannel.setter
    def ROIOffsetYChannel(self, value):
        """
        Return the channel address in use for the image ROI vertical offset.

        Parameters
        ----------
        value : str
            Channel address

        """
        if self._roioffsetychannel != value:
            # Disconnect old channel
            if self._roioffsetychannel:
                self._roioffsetychannel.disconnect()
            # Create and connect new channel
            self._roioffsetychannel = PyDMChannel(
                address=value,
                connection_slot=self.roioffsety_connection_state_changed,
                value_slot=self.roioffsety_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[4] = self._roioffsetychannel
            self._roioffsetychannel.connect()

    @Property(str)
    def ROIWidthChannel(self):
        """
        Return the channel address in use for the image ROI width.

        Returns
        -------
        str
            Channel address

        """
        if self._roiwidthchannel:
            return str(self._roiwidthchannel.address)
        else:
            return ''

    @ROIWidthChannel.setter
    def ROIWidthChannel(self, value):
        """
        Return the channel address in use for the image ROI width.

        Parameters
        ----------
        value : str
            Channel address

        """
        if self._roiwidthchannel != value:
            # Disconnect old channel
            if self._roiwidthchannel:
                self._roiwidthchannel.disconnect()
            # Create and connect new channel
            self._roiwidthchannel = PyDMChannel(
                address=value,
                connection_slot=self.roiwidth_connection_state_changed,
                value_slot=self.roiwidth_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[5] = self._roiwidthchannel
            self._roiwidthchannel.connect()

    @Property(str)
    def ROIHeightChannel(self):
        """
        Return the channel address in use for the image ROI height.

        Returns
        -------
        str
            Channel address

        """
        if self._roiheightchannel:
            return str(self._roiheightchannel.address)
        else:
            return ''

    @ROIHeightChannel.setter
    def ROIHeightChannel(self, value):
        """
        Return the channel address in use for the image ROI height.

        Parameters
        ----------
        value : str
            Channel address

        """
        if self._roiheightchannel != value:
            # Disconnect old channel
            if self._roiheightchannel:
                self._roiheightchannel.disconnect()
            # Create and connect new channel
            self._roiheightchannel = PyDMChannel(
                address=value,
                connection_slot=self.roiheight_connection_state_changed,
                value_slot=self.roiheight_value_changed,
                severity_slot=self.alarmSeverityChanged)
            self._channels[6] = self._roiheightchannel
            self._roiheightchannel.connect()

    def channels(self):
        """
        Return the channels being used for this Widget.

        Returns
        -------
        channels : list
            List of PyDMChannel objects
        """
        return self._channels

    def channels_for_tools(self):
        """Return channels for tools."""
        return [self._imagechannel]
Example #4
0
class CurveItem:
    """Represents a curve to be plotted in a diagram."""

    SignalAppearance = namedtuple('SignalAppearance',
                                  ['pen_color', 'pen_width', 'pen_style'])

    colors = [
        SignalAppearance(QtGui.QColor(255, 255, 0), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(255, 0, 0), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(0, 255, 0), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(255, 255, 255), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(51, 153, 255), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(0, 255, 255), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(255, 0, 255), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(204, 153, 102), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(0, 0, 255), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(0, 255, 0), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(255, 204, 0), 1,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(153, 255, 153), 2,
                         QtCore.Qt.DotLine),
        SignalAppearance(QtGui.QColor(255, 170, 0), 2,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 0, 0), 2,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(0, 255, 255), 1,
                         QtCore.Qt.DotLine),
        SignalAppearance(QtGui.QColor(255, 170, 255), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(127, 255, 127), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 255, 127), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 0, 0), 2,
                         QtCore.Qt.DotLine),
        SignalAppearance(QtGui.QColor(255, 0, 0), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(0, 255, 0), 2,
                         QtCore.Qt.DotLine),
        SignalAppearance(QtGui.QColor(255, 255, 255), 2,
                         QtCore.Qt.SolidLine),
        SignalAppearance(QtGui.QColor(51, 153, 255), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 0, 255), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 153, 204), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(204, 153, 102), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 204, 0), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 0, 255), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 153, 204), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(204, 153, 102), 1,
                         QtCore.Qt.DashLine),
        SignalAppearance(QtGui.QColor(255, 204, 0), 1,
                         QtCore.Qt.DashLine)
    ]

    def __init__(self, subscription_id, driver_addr, sig_name, y_axis,
                 color_idx):
        """
        Initializes an instance of class CurveItem.

        driver_addr - IcePAP driver address.
        sig_name    - Signal name.
        y_axis      - Y axis to plot against.
        """
        self.subscription_id = subscription_id
        self.driver_addr = driver_addr
        self.signal_name = sig_name
        self.y_axis = y_axis
        self.array_time = []
        self.array_val = []
        self.val_min = 0
        self.val_max = 0
        col_item = self.colors[color_idx]
        self.color = col_item.pen_color
        self.pen = {'color': col_item.pen_color,
                    'width': col_item.pen_width,
                    'style': col_item.pen_style}
        self.curve = None
        self.lock = RLock()
        self.signature = ''
        self.update_signature()

    def update_signature(self):
        """Sets the new value of the signature string."""
        self.signature = '{}:{}:{}'.format(self.driver_addr,
                                           self.signal_name,
                                           self.y_axis)

    def create_curve(self):
        """Creates a new plot item."""
        with self.lock:
            self.curve = PlotCurveItem(x=self.array_time,
                                       y=self.array_val,
                                       pen=self.pen)
        return self.curve

    def update_curve(self, time_min, time_max):
        """Updates the curve with recent collected data."""
        with self.lock:
            idx_min = self.get_time_index(time_min)
            idx_max = self.get_time_index(time_max)
            self.curve.setData(x=self.array_time[idx_min:idx_max],
                               y=self.array_val[idx_min:idx_max])

    def in_range(self, t):
        """
        Check to see if time is within range of collected data.

        t - Time value.
        Return: True if time is within range of collected data.
                Otherwise False.
        """
        with self.lock:
            if self.array_time and \
                    self.array_time[0] < t < self.array_time[-1]:
                return True
        return False

    def start_time(self):
        """
        Get time for first data sample.

        Return: Time of the first collected data sample. -1 if none.
        """
        with self.lock:
            if self.array_time:
                return self.array_time[0]
        return -1

    def collect(self, new_data):
        """Store new collected data."""
        with self.lock:
            if not self.array_val:
                self.val_min = self.val_max = new_data[0][1]
            for t, v in new_data:
                self.array_time.append(t)
                self.array_val.append(v)
                if v > self.val_max:
                    self.val_max = v
                elif v < self.val_min:
                    self.val_min = v

    def get_y(self, time_val):
        """
        Retrieve the signal value corresponding to the provided time value.

        t_val - Time value.
        Return: Signal value corresponding to an adjacent sample in time.
        """
        with self.lock:
            idx = self.get_time_index(time_val)
            return self.array_val[idx]

    def clear(self):
        self.array_time[:] = []
        self.array_val[:] = []

    def get_time_index(self, time_val):
        """
        Retrieve the sample index corresponding to the provided time value.

        t_val - Time value.
        Return: Index of a sample adjacent to the provided time value.
        """
        with self.lock:
            if not self.array_time:
                return -1
            if len(self.array_time) == 1:
                return 0
            time_min = self.array_time[0]
            time_max = self.array_time[-1]
            if time_val < time_min:
                return 0
            elif time_val > time_max:
                return len(self.array_time)
            delta_t = time_max - time_min
            t = time_val - time_min
            idx = int((t / delta_t) * len(self.array_time))
            while self.array_time[idx] > time_val:
                idx -= 1
            while self.array_time[idx] < time_val:
                idx += 1
            return idx
Example #5
0
class SiriusProcessImage(QWidget):
    def __init__(self, parent=None, device='', convertion_set=True,
                 orientation='V'):
        super().__init__(parent)
        self._dev = SiriusPVName(device)
        self._conv_set = convertion_set
        self._ori = orientation
        self._setupUi()

    def _setupUi(self):
        self.image_view = PyDMImageView(
            parent=self,
            image_channel=self._dev+':Image-RB',
            width_channel=self._dev+':Width-RB')
        self.image_view.setObjectName('image')
        self.image_view.setStyleSheet(
            '#image{min-width:20em; min-height:20em;}')
        self.image_view.maxRedrawRate = 5
        self.image_view.colorMap = self.image_view.Jet
        self.image_view.readingOrder = self.image_view.Clike
        self._roixproj = SiriusConnectionSignal(self._dev+':ROIProjX-Mon')
        self._roiyproj = SiriusConnectionSignal(self._dev+':ROIProjY-Mon')
        self._roixfit = SiriusConnectionSignal(self._dev+':ROIGaussFitX-Mon')
        self._roiyfit = SiriusConnectionSignal(self._dev+':ROIGaussFitY-Mon')
        self._roixaxis = SiriusConnectionSignal(self._dev+':ROIAxisX-Mon')
        self._roiyaxis = SiriusConnectionSignal(self._dev+':ROIAxisY-Mon')
        self._roistartx = SiriusConnectionSignal(self._dev+':ROIStartX-Mon')
        self._roistarty = SiriusConnectionSignal(self._dev+':ROIStartY-Mon')
        self._roiendx = SiriusConnectionSignal(self._dev+':ROIEndX-Mon')
        self._roiendy = SiriusConnectionSignal(self._dev+':ROIEndY-Mon')
        self._roixproj.new_value_signal[np.ndarray].connect(self._update_roi)
        self.plt_roi = PlotCurveItem([0, 0, 500, 500, 0], [0, 500, 500, 0, 0])
        pen = mkPen()
        pen.setColor(QColor('red'))
        pen.setWidth(1)
        self.plt_roi.setPen(pen)
        self.image_view.addItem(self.plt_roi)
        self.plt_fit_x = PlotCurveItem([0, 0], [0, 400])
        self.plt_fit_y = PlotCurveItem([0, 0], [0, 400])
        self.plt_his_x = PlotCurveItem([0, 0], [0, 400])
        self.plt_his_y = PlotCurveItem([0, 0], [0, 400])
        pen = mkPen()
        pen.setColor(QColor('yellow'))
        self.plt_his_x.setPen(pen)
        self.plt_his_y.setPen(pen)
        self.image_view.addItem(self.plt_fit_x)
        self.image_view.addItem(self.plt_fit_y)
        self.image_view.addItem(self.plt_his_x)
        self.image_view.addItem(self.plt_his_y)

        gb_conf = self._get_config_widget(self)
        gb_posi = self._get_position_widget(self)
        gb_size = self._get_size_widget(self)

        gl = QGridLayout(self)
        gl.setContentsMargins(0, 0, 0, 0)
        if self._ori == 'V':
            gl.addWidget(self.image_view, 0, 0, 1, 2)
            gl.addWidget(gb_posi, 1, 0)
            gl.addWidget(gb_size, 1, 1)
            gl.addWidget(gb_conf, 2, 0, 1, 2)
        else:
            gl.addWidget(self.image_view, 0, 0, 1, 2)
            gl.addWidget(gb_conf, 0, 2, 2, 1)
            gl.addWidget(gb_posi, 1, 0)
            gl.addWidget(gb_size, 1, 1)
            gl.setColumnStretch(0, 5)
            gl.setColumnStretch(1, 5)
            gl.setColumnStretch(2, 1)

    def _get_config_widget(self, parent):
        gb_pos = QGroupBox('Image Processing ', parent)

        meth_sp = PyDMEnumComboBox(
            gb_pos, init_channel=self._dev+':CalcMethod-Sel')
        meth_lb = SiriusLabel(gb_pos, init_channel=self._dev+':CalcMethod-Sts')
        meth_ld = QLabel('Method', gb_pos)

        nrpt_ld = QLabel('Num. Pts.', gb_pos)
        nrpt_sp = SiriusSpinbox(
            gb_pos, init_channel=self._dev+':NrAverages-SP')
        nrpt_sp.showStepExponent = False
        rdb = PyDMLabel(gb_pos, init_channel=self._dev+':NrAverages-RB')
        rdb.setAlignment(Qt.AlignLeft | Qt.AlignVCenter)
        slsh = QLabel('/', gb_pos, alignment=Qt.AlignCenter)
        slsh.setStyleSheet('min-width:0.7em; max-width:0.7em;')
        cnt = PyDMLabel(gb_pos, init_channel=self._dev+':BufferSize-Mon')
        cnt.setAlignment(Qt.AlignRight | Qt.AlignVCenter)
        cnt.setToolTip('Current Buffer Size')
        pbt = PyDMPushButton(
            gb_pos, init_channel=self._dev+':ResetBuffer-Cmd', pressValue=1)
        pbt.setToolTip('Reset Buffer')
        pbt.setIcon(qta.icon('mdi.delete-empty'))
        pbt.setObjectName('rst')
        pbt.setStyleSheet(
            '#rst{min-width:25px; max-width:25px; icon-size:20px;}')
        nrpt_wd = QWidget(gb_pos)
        hbl = QHBoxLayout(nrpt_wd)
        hbl.addWidget(pbt)
        hbl.addStretch()
        hbl.addWidget(cnt)
        hbl.addWidget(slsh)
        hbl.addWidget(rdb)

        rsx_sp = SiriusSpinbox(gb_pos, init_channel=self._dev+':ROISizeX-SP')
        rsx_sp.showStepExponent = False
        rsx_lb = SiriusLabel(gb_pos, init_channel=self._dev+':ROISizeX-RB')
        rsx_ld = QLabel('ROI Size X', gb_pos)

        rsy_sp = SiriusSpinbox(gb_pos, init_channel=self._dev+':ROISizeY-SP')
        rsy_sp.showStepExponent = False
        rsy_lb = SiriusLabel(gb_pos, init_channel=self._dev+':ROISizeY-RB')
        rsy_ld = QLabel('ROI Size Y', gb_pos)

        ra_bt = PyDMStateButton(
            gb_pos, init_channel=self._dev+':ROIAutoCenter-Sel')
        ra_lb = SiriusLabel(
            gb_pos, init_channel=self._dev+':ROIAutoCenter-Sts')
        ra_ld = QLabel('Auto Center:', gb_pos)

        rcx_sp = SiriusSpinbox(gb_pos, init_channel=self._dev+':ROICenterX-SP')
        rcx_sp.showStepExponent = False
        rcx_lb = SiriusLabel(gb_pos, init_channel=self._dev+':ROICenterX-RB')
        rcx_ld = QLabel('ROI Center X', gb_pos)

        rcy_sp = SiriusSpinbox(gb_pos, init_channel=self._dev+':ROICenterY-SP')
        rcy_sp.showStepExponent = False
        rcy_lb = SiriusLabel(gb_pos, init_channel=self._dev+':ROICenterY-RB')
        rcy_ld = QLabel('ROI Center Y', gb_pos)

        sts_bt = QPushButton(qta.icon('fa5s.ellipsis-h'), '', gb_pos)
        sts_bt.setToolTip('Open Detailed Configs')
        sts_bt.setObjectName('sts')
        sts_bt.setStyleSheet(
            '#sts{min-width:25px; max-width:25px; icon-size:20px;}')
        Window = create_window_from_widget(
            _DetailedWidget, title='Image Processing Detailed Configs')
        connect_window(
            sts_bt, Window, gb_pos, device=self._dev,
            convertion_set=self._conv_set)
        hlay = QHBoxLayout()
        hlay.addWidget(sts_bt, alignment=Qt.AlignRight)

        lay = QGridLayout(gb_pos)
        if self._ori == 'V':
            lay.addWidget(meth_ld, 0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(meth_sp, 0, 1)
            lay.addWidget(meth_lb, 1, 1)
            lay.addWidget(nrpt_ld, 2, 0, alignment=Qt.AlignLeft)
            lay.addWidget(nrpt_sp, 2, 1)
            lay.addWidget(nrpt_wd, 3, 0, 1, 2)
            lay.addWidget(rsx_ld, 4+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rsx_sp, 4+0, 1)
            lay.addWidget(rsx_lb, 4+1, 1)
            lay.addWidget(rsy_ld, 6+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rsy_sp, 6+0, 1)
            lay.addWidget(rsy_lb, 6+1, 1)
            lay.addWidget(sts_bt, 0, 0+4, alignment=Qt.AlignRight)
            lay.addWidget(ra_ld, 2+0, 0+3, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(ra_bt, 2+0, 1+3)
            lay.addWidget(ra_lb, 2+1, 1+3, alignment=Qt.AlignLeft)
            lay.addWidget(rcx_ld, 4+0, 0+3, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rcx_sp, 4+0, 1+3)
            lay.addWidget(rcx_lb, 4+1, 1+3)
            lay.addWidget(rcy_ld, 6+0, 0+3, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rcy_sp, 6+0, 1+3)
            lay.addWidget(rcy_lb, 6+1, 1+3)
        else:
            lay.addWidget(meth_ld, 0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(meth_sp, 0, 1)
            lay.addWidget(meth_lb, 1, 1)
            lay.addWidget(nrpt_ld, 2, 0, alignment=Qt.AlignLeft)
            lay.addWidget(nrpt_sp, 2, 1)
            lay.addWidget(nrpt_wd, 3, 0, 1, 2)
            lay.addWidget(rsx_ld, 4+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rsx_sp, 4+0, 1)
            lay.addWidget(rsx_lb, 4+1, 1)
            lay.addWidget(rsy_ld, 6+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rsy_sp, 6+0, 1)
            lay.addWidget(rsy_lb, 6+1, 1)
            lay.addWidget(ra_ld, 8+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(ra_bt, 8+0, 1)
            lay.addWidget(ra_lb, 8+1, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rcx_ld, 10+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rcx_sp, 10+0, 1)
            lay.addWidget(rcx_lb, 10+1, 1)
            lay.addWidget(rcy_ld, 12+0, 0, 2, 1, alignment=Qt.AlignLeft)
            lay.addWidget(rcy_sp, 12+0, 1)
            lay.addWidget(rcy_lb, 12+1, 1)
            lay.addWidget(sts_bt, 14, 0, alignment=Qt.AlignLeft)
            lay.setRowStretch(15, 5)

        return gb_pos

    def _get_position_widget(self, parent):
        gb_posi = QGroupBox('Position [px / mm]', parent)
        fl_posi = QFormLayout(gb_posi)

        wid = QWidget(gb_posi)
        wid.setLayout(QHBoxLayout())
        xave = SiriusLabel(wid, init_channel=self._dev+':BeamCenterX-Mon')
        xavemm = SiriusLabel(wid, init_channel=self._dev+':BeamCentermmX-Mon')
        xave.setAlignment(Qt.AlignVCenter | Qt.AlignRight)
        xavemm.setAlignment(Qt.AlignVCenter | Qt.AlignLeft)
        sep = QLabel('/', wid)
        sep.setStyleSheet('max-width:0.7em;')
        wid.layout().addWidget(xave)
        wid.layout().addWidget(sep)
        wid.layout().addWidget(xavemm)
        fl_posi.addRow(QLabel(
            'X =', gb_posi, alignment=Qt.AlignBottom), wid)

        wid = QWidget(gb_posi)
        wid.setLayout(QHBoxLayout())
        yave = SiriusLabel(wid, init_channel=self._dev+':BeamCenterY-Mon')
        yavemm = SiriusLabel(wid, init_channel=self._dev+':BeamCentermmY-Mon')
        yave.setAlignment(Qt.AlignVCenter | Qt.AlignRight)
        yavemm.setAlignment(Qt.AlignVCenter | Qt.AlignLeft)
        sep = QLabel('/', wid)
        sep.setStyleSheet('max-width:0.7em;')
        wid.layout().addWidget(yave)
        wid.layout().addWidget(sep)
        wid.layout().addWidget(yavemm)
        fl_posi.addRow(QLabel(
            'Y =', gb_posi, alignment=Qt.AlignBottom), wid)

        return gb_posi

    def _get_size_widget(self, parent):
        gb_size = QGroupBox('Size [px / mm]', parent)
        fl_size = QFormLayout(gb_size)

        wid = QWidget(gb_size)
        wid.setLayout(QHBoxLayout())
        xave = SiriusLabel(wid, init_channel=self._dev+':BeamSizeX-Mon')
        xavemm = SiriusLabel(wid, init_channel=self._dev+':BeamSizemmX-Mon')
        xave.setAlignment(Qt.AlignVCenter | Qt.AlignRight)
        xavemm.setAlignment(Qt.AlignVCenter | Qt.AlignLeft)
        sep = QLabel('/', wid)
        sep.setStyleSheet('max-width:0.7em;')
        wid.layout().addWidget(xave)
        wid.layout().addWidget(sep)
        wid.layout().addWidget(xavemm)
        fl_size.addRow(QLabel(
            'X =', gb_size, alignment=Qt.AlignBottom), wid)

        wid = QWidget(gb_size)
        wid.setLayout(QHBoxLayout())
        yave = SiriusLabel(wid, init_channel=self._dev+':BeamSizeY-Mon')
        yavemm = SiriusLabel(wid, init_channel=self._dev+':BeamSizemmY-Mon')
        yave.setAlignment(Qt.AlignVCenter | Qt.AlignRight)
        yavemm.setAlignment(Qt.AlignVCenter | Qt.AlignLeft)
        sep = QLabel('/', wid)
        sep.setStyleSheet('max-width:0.7em;')
        wid.layout().addWidget(yave)
        wid.layout().addWidget(sep)
        wid.layout().addWidget(yavemm)
        fl_size.addRow(QLabel(
            'Y =', gb_size, alignment=Qt.AlignBottom), wid)

        return gb_size

    def _update_roi(self):
        xaxis = self._roixaxis.getvalue()
        yaxis = self._roiyaxis.getvalue()
        xproj = self._roixproj.getvalue()
        yproj = self._roiyproj.getvalue()
        xfit = self._roixfit.getvalue()
        yfit = self._roiyfit.getvalue()
        notnone = xaxis is not None
        notnone &= yaxis is not None
        notnone &= xproj is not None
        notnone &= yproj is not None
        notnone &= xfit is not None
        notnone &= yfit is not None
        if notnone:
            samesize = xaxis.size == xproj.size
            samesize &= xaxis.size == xfit.size
            samesize &= yaxis.size == yproj.size
            samesize &= yaxis.size == yfit.size
            if samesize:
                xproj = xproj/np.max(xproj) * 400 + yaxis[0]
                yproj = yproj/np.max(yproj) * 400 + xaxis[0]
                xfit = xfit/np.max(xfit) * 400 + yaxis[0]
                yfit = yfit/np.max(yfit) * 400 + xaxis[0]
                self.plt_his_x.setData(xaxis, xproj)
                self.plt_his_y.setData(yproj, yaxis)
                self.plt_fit_x.setData(xaxis, xfit)
                self.plt_fit_y.setData(yfit, yaxis)

        srtx = self._roistartx.getvalue()
        srty = self._roistarty.getvalue()
        endx = self._roiendx.getvalue()
        endy = self._roiendy.getvalue()
        if set([None, ]) - set([srtx, srty, endx, endy]):
            self.plt_roi.setData(
                [srtx, srtx, endx, endx, srtx],
                [srty, endy, endy, srty, srty])
Example #6
0
class HistogramItem(GraphicsWidget):
    """
    This is a graphicsWidget which provides controls for adjusting the display of an image.

    Includes:

    - Image histogram 
    - Movable region over histogram to select black/white levels

    Parameters
    ----------
    image : ImageItem or None
        If *image* is provided, then the control will be automatically linked to
        the image and changes to the control will be immediately reflected in
        the image's appearance.
    fillHistogram : bool
        By default, the histogram is rendered with a fill.
        For performance, set *fillHistogram* = False.
    """

    sigLevelsChanged = pyqtSignal(object)
    sigLevelChangeFinished = pyqtSignal(object)

    def __init__(self, image=None, fillHistogram=True, bounds: tuple = None):
        GraphicsWidget.__init__(self)
        self.imageItem = lambda: None  # fake a dead weakref

        self.layout = QGraphicsGridLayout()
        self.setLayout(self.layout)
        self.layout.setContentsMargins(1, 1, 1, 1)
        self.layout.setSpacing(0)
        self.vb = ViewBox(parent=self)
        # self.vb.setMaximumHeight(152)
        # self.vb.setMinimumWidth(45)
        self.vb.setMouseEnabled(x=True, y=False)

        self.region = LinearRegionItem([0, 1], 'vertical', swapMode='block', bounds=bounds)
        self.region.setZValue(1000)
        self.vb.addItem(self.region)
        self.region.lines[0].addMarker('<|', 0.5)
        self.region.lines[1].addMarker('|>', 0.5)
        self.region.sigRegionChanged.connect(self.regionChanging)
        self.region.sigRegionChangeFinished.connect(self.regionChanged)

        self.axis = AxisItem('bottom', linkView=self.vb, maxTickLength=-10, parent=self)
        self.layout.addItem(self.axis, 1, 0)
        self.layout.addItem(self.vb, 0, 0)
        self.range = None
        self.vb.sigRangeChanged.connect(self.viewRangeChanged)

        self.plot = PlotCurveItem(pen=(200, 200, 200, 100))
        # self.plot.rotate(90)
        self.vb.addItem(self.plot)

        self.fillHistogram(fillHistogram)
        self._showRegions()

        self.autoHistogramRange()

        if image is not None:
            self.setImageItem(image)

    def fillHistogram(self, fill=True, level=0.0, color=(100, 100, 200)):
        if fill:
            self.plot.setFillLevel(level)
            self.plot.setBrush(color)
        else:
            self.plot.setFillLevel(None)


    def paint(self, p, *args):
        rgn = self.getLevels()
        self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[0]))
        self.vb.mapFromViewToItem(self, Point(self.vb.viewRect().center().x(), rgn[1]))


    def setHistogramRange(self, mn, mx, padding=0.1):
        """Set the Y range on the histogram plot. This disables auto-scaling."""
        self.vb.enableAutoRange(self.vb.XAxis, False)
        self.vb.setYRange(mn, mx, padding)

    def autoHistogramRange(self):
        """Enable auto-scaling on the histogram plot."""
        self.vb.enableAutoRange(self.vb.XYAxes)

    def setImageItem(self, img):
        """Set an ImageItem to have its levels and LUT automatically controlled
        by this HistogramLUTItem.
        """
        self.imageItem = weakref.ref(img)
        img.sigImageChanged.connect(self.imageChanged)
        self.regionChanged()
        self.imageChanged(autoLevel=True)

    def viewRangeChanged(self):
        self.update()

    def regionChanged(self):
        if self.imageItem() is not None:
            self.imageItem().setLevels(self.getLevels())
        self.sigLevelChangeFinished.emit(self)

    def regionChanging(self):
        if self.imageItem() is not None:
            self.imageItem().setLevels(self.getLevels())
        self.sigLevelsChanged.emit(self)
        self.update()

    def imageChanged(self, autoLevel=False):
        if self.imageItem() is None:
            return

        self.plot.setVisible(True)
        # plot one histogram for all image data
        h = self.imageItem().getHistogram()
        if h[0] is None:
            return
        self.plot.setData(*h)
        if autoLevel:
            mn = h[0][0]
            mx = h[0][-1]
            self.region.setRegion([mn, mx])
        else:
            mn, mx = self.imageItem().levels
            self.region.setRegion([mn, mx])

    def getLevels(self):
        """
        Return the min and max levels.
        """
        return self.region.getRegion()

    def setLevels(self, min=None, max=None):
        """
        Set the min/max (bright and dark) levels.
        """
        assert None not in (min, max)
        self.region.setRegion((min, max))

    def _showRegions(self):
        self.region.setVisible(True)

    def saveState(self):
        return {
            'levels': self.getLevels(),
        }

    def restoreState(self, state):
        self.setLevels(*state['levels'])
Example #7
0
class Plot(PlotWidget):
    """ Sublcass of PyQtGraph.PlotWidget to display cycling data.
    
        Parameters
        ----------
        parent : QMainWindow
            Main window.
    """

    currentPointChanged = Signal(dict)
    """ **signal**  currentPointChanged(dict `values`)
        
        Emitted when a point in the plot is hovered over. The dict provides
        the date, speed, distance, calories and time data for the chosen point.
    """

    pointSelected = Signal(object)
    """ **signal** pointSelected(datetime `currentPoint`)
        
        Emitted when the plot is double clicked, with the date from the
        current point.
    """
    def __init__(self, parent, style="dark"):

        self._ySeries = None
        self.plotItem = None
        self.style = PlotStyle(style)
        self.setStyle(style)

        self.dateAxis = CustomDateAxisItem()
        self.plotItem = CustomPlotItem(viewBox=CustomViewBox(),
                                       axisItems={
                                           'bottom': self.dateAxis,
                                           'left': CustomAxisItem('left')
                                       })
        super().__init__(plotItem=self.plotItem)

        self.dateAxis.axisDoubleClicked.connect(self.setPlotRange)

        self.hgltPnt = None

        self.parent = parent

        self.plottable = ['speed', 'distance', 'time', 'calories']

        self._initRightAxis()

        # axis labels
        self.plotItem.setLabel('bottom', text='Date')

        # show grid on left and bottom axes
        self.plotItem.getAxis('left').setGrid(255)
        self.plotItem.getAxis('bottom').setGrid(255)

        # cross hairs
        self.vLine = InfiniteLine(angle=90, movable=False)
        self.hLine = InfiniteLine(angle=0, movable=False)
        self.plotItem.addItem(self.vLine, ignoreBounds=True)
        self.plotItem.addItem(self.hLine, ignoreBounds=True)

        self.plotItem.scene().sigMouseMoved.connect(self.mouseMoved)
        self.plotItem.scene().sigMouseClicked.connect(self.plotClicked)

        # update second view box
        self.updateViews()
        self.plotItem.vb.sigResized.connect(self.updateViews)

        self.currentPoint = {}

        # all points that are/were PBs can be highlighted
        self._showPBs = False
        self._regenerateCachedPBs = {key: False for key in self.plottable}
        self.hgltPBs = {key: [] for key in self.plottable}

        self.viewMonths = None

        self.setYSeries('speed')
        self.plotTotalDistance()

    @property
    def data(self):
        return self.parent.data

    def _initRightAxis(self):
        self.vb2 = CustomViewBox()
        self.plotItem.showAxis('right')
        self.plotItem.scene().addItem(self.vb2)
        self.plotItem.getAxis('right').linkToView(self.vb2)
        self.vb2.setXLink(self.plotItem)

    @property
    def viewBoxes(self):
        """ Return list of all viexBoxes in the plot. """
        vbx = [self.plotItem.vb]
        if hasattr(self, 'vb2'):
            vbx.append(self.vb2)
        return vbx

    @Slot()
    def updateViews(self):
        ## Copied from PyQtGraph MultiplePlotAxes.py example ##
        # view has resized; update auxiliary views to match
        self.vb2.setGeometry(self.plotItem.vb.sceneBoundingRect())
        # need to re-update linked axes since this was called
        # incorrectly while views had different shapes.
        # (probably this should be handled in ViewBox.resizeEvent)
        self.vb2.linkedViewChanged(self.plotItem.vb, self.vb2.XAxis)

    def getState(self):
        state = {}
        state['ySeries'] = self.ySeries
        for n, vb in enumerate(self.viewBoxes):
            key = f"vb{n}State"
            state[key] = vb.getState()
        if self.currentPoint:
            state['currentPoint'] = self.currentPoint['index']
        return state

    def setState(self, state):
        self.ySeries = state['ySeries']
        for n, vb in enumerate(self.viewBoxes):
            key = f"vb{n}State"
            vb.setState(state[key])
        if len(self.viewBoxes) > 1:
            self.viewBoxes[1].setXLink(self.plotItem)
        if 'currentPoint' in state:
            self.setCurrentPoint(state['currentPoint'])

    def setStyle(self, style):
        self.style.name = style
        dct = {
            'foreground': self.style.foreground,
            'background': self.style.background
        }
        setConfigOptions(**dct)
        if self.plotItem is not None:
            self.plotItem.setButtonPixmaps()
        if self.ySeries is not None:
            self.updatePlots()

    @Slot()
    def viewAll(self):
        # enableAutoRange on both viewBoxes
        for vb in self.viewBoxes:
            vb.enableAutoRange()
        if self._showPBs:
            self._highlightPBs(self._showPBs)

    @Slot()
    def resetMonthRange(self):
        if self.viewMonths is not None:
            self.setXAxisRange(self.viewMonths)
        if self._showPBs:
            self._highlightPBs(self._showPBs)

    @Slot(float, float)
    def setPlotRange(self, x0, x1):
        """ Set range of both view boxes to cover the points between the two
            given timestamps.   
        """
        # apply to both the current scatter and background plot
        if not hasattr(self, 'dataItem') or not hasattr(
                self, 'backgroundItem'):
            return None
        xRange0, xRange1 = self.viewBoxes[0].xRange
        data = [(self.dataItem.scatter.data['x'],
                 self.dataItem.scatter.data['y'], self.viewBoxes[0]),
                (self.backgroundItem.xData, self.backgroundItem.yData,
                 self.viewBoxes[1])]

        for xPoints, yData, viewBox in data:
            # find x-coords of points in the given month
            mask = np.in1d(
                np.where(xPoints >= x0)[0],
                np.where(xPoints <= x1)[0])
            if np.any(mask):
                # select the corresponding y data
                idx = np.where(xPoints >= x0)[0][mask]
                yPoints = yData[idx]
                # get min and max
                y0 = np.min(yPoints)
                y1 = np.max(yPoints)
                # set min and max for x and y in the viewBox
                viewBox.setRange(xRange=(x0, x1), yRange=(y0, y1))

    @Slot(object, bool)
    def setXAxisRange(self, months, fromRecentSession=True):
        """ Scale the plot to show the most recent `months` months. 
        
            If `fromRecentSession` is True (default), the month range is calculated
            relative to the most recent session in the `CycleData` object.
            Otherwise, it is calculated from the current date.
            These two options are equivalent if there are sessions from the current
            month in the `CycleData` object.
        """
        self.viewMonths = months
        if fromRecentSession:
            ts1 = self.data.dateTimestamps[-1]
        else:
            now = datetime.now()
            ts1 = now.timestamp()
            if months is not None and now.month != self.data.datetimes[
                    -1].month:
                months -= now.month - self.data.datetimes[-1].month
        if months is None:
            ts0 = self.data.dateTimestamps[0]
        else:
            days = self.viewMonths * 365 / 12  # number of days to go back
            td = timedelta(days=days)
            ts0 = (datetime.fromtimestamp(ts1) - td).timestamp()
        self.setPlotRange(ts0, ts1)

    @Slot()
    def updatePlots(self):
        self.plotSeries(self.ySeries, mode='set')
        self.plotTotalDistance(mode='set')
        self.resetMonthRange()
        self._regenerateCachedPBs = {
            key: True
            for key in self._regenerateCachedPBs
        }

    @property
    def ySeries(self):
        return self._ySeries

    @ySeries.setter
    def ySeries(self, key):
        self._ySeries = key
        self.plotSeries(self.ySeries)

    def setYSeries(self, key):
        self.ySeries = key

    def plotSeries(self, key, mode='new'):
        """ Plot given series on y1 axis. """
        label = self.data.quickNames[key]
        if key == 'time':
            series = self.data.timeHours
            self.plotItem.getAxis('left').tickFormatter = floatToHourMinSec
        else:
            series = self.data[label]
            self.plotItem.getAxis('left').tickFormatter = None
        styleDict = self.style[key]
        style = self._makeScatterStyle(**styleDict)
        if mode == 'new':
            self.dataItem = self.plotItem.scatterPlot(self.data.dateTimestamps,
                                                      series, **style)
        elif mode == 'set':
            self.dataItem.setData(self.data.dateTimestamps, series, **style)
        self.plotItem.setLabel('left', text=label, color=styleDict['colour'])

        if self.viewBoxes[0].xRange is not None:
            self.setPlotRange(*self.viewBoxes[0].xRange)

        if self._showPBs:
            self._highlightPBs(self._showPBs)

    def plotTotalDistance(self, mode='new'):
        """ Plot monthly total distance. """
        colour = self.style['odometer']['colour']
        style = self._makeFillStyle(colour)
        dts, odo = self.data.getMonthlyOdometer()
        dts = [dt.timestamp() for dt in dts]
        if mode == 'new':
            self.backgroundItem = PlotCurveItem(dts, odo, **style)
            self.vb2.addItem(self.backgroundItem)
        elif mode == 'set':
            self.backgroundItem.setData(dts, odo, **style)
        self.plotItem.getAxis('right').setLabel('Total monthly distance',
                                                color=colour)

    @Slot(str)
    def switchSeries(self, key):
        if key in self.plottable and key in self.data.quickNames.keys():
            self.plotItem.removeItem(self.dataItem)
            self.plotSeries(key)

    @Slot(object)
    def plotClicked(self, event):
        """ If the plot is clicked, emit `pointSelected` signal with 
            `currentPoint` datetime.  
        """
        # get x and y bounds
        yMin = 0  # no top axis
        yMax = self.plotItem.getAxis('bottom').scenePos().y()
        # left axis position is 1,1 (don't know why), so use the bottom axis x here
        xMin = self.plotItem.getAxis('bottom').scenePos().x()
        xMax = self.plotItem.getAxis('right').scenePos().x()

        pos = event.scenePos()
        if xMin <= pos.x() <= xMax and yMin <= pos.y(
        ) <= yMax:  # event.double() and
            idx = self.currentPoint['index']
            date = self.data.datetimes[idx]
            self.pointSelected.emit(date)

    @staticmethod
    def _makeScatterStyle(colour, symbol):
        """ Make style for series with no line but with symbols. """
        pen = mkPen(colour)
        brush = mkBrush(colour)
        d = {'symbol': symbol, 'symbolPen': pen, 'symbolBrush': brush}
        return d

    @staticmethod
    def _makeFillStyle(colour):
        """ Make style for PlotCurveItem with fill underneath. """
        pen = mkPen(colour)
        brush = mkBrush(colour)
        d = {'pen': pen, 'brush': brush, 'fillLevel': 0}
        return d

    @property
    def currentPoint(self):
        return self._point

    @currentPoint.setter
    def currentPoint(self, value):
        self._point = value

    def setCurrentPoint(self, idx):
        """ Set the `currentPoint` dict from index `idx` in the `data` DataFrame
            and emit `currentPointChanged` signal.
        """
        self.currentPoint['index'] = idx
        self.currentPoint['date'] = self.data.datetimes[idx].strftime(
            "%a %d %b %Y")
        self.currentPoint['speed'] = self.data.avgSpeed[idx]
        self.currentPoint['distance'] = self.data.distance[idx]
        self.currentPoint['calories'] = self.data.calories[idx]
        self.currentPoint['time'] = self.data.time[idx]
        self.currentPointChanged.emit(self.currentPoint)

    @Slot(object)
    def setCurrentPointFromDate(self, date):
        """ Find point at the given date and highlight it. """
        dt = datetime(date.year, date.month, date.day)
        idx = self.data.datetimes.index(dt)
        pt = self.dataItem.scatter.points()[idx]
        self.ensurePointVisible(pt)
        self._highlightPoint(pt)
        self.setCurrentPoint(idx)

    def ensurePointVisible(self, pt):
        ts = pt.pos().x()
        x0, x1 = self.viewBoxes[0].xRange
        if ts < x0:
            x0 = ts - 1e6
        elif ts > x1:
            x1 = ts + 1e6
        self.setPlotRange(x0, x1)

    @Slot(object)
    def _highlightPoint(self, point=None):
        """ Change pen and brush of given point (and reset any previously 
            highlighted points). 
        """
        if point is None:
            if self.hgltPnt is not None:
                point = self.hgltPnt
            else:
                return None
        try:
            # if other points are already highlighted, remove highlighting
            self.hgltPnt.resetPen()
            self.hgltPnt.resetBrush()
        except (AttributeError, RuntimeError):
            pass

        colour = self.style['highlightPoint']['colour']
        pen = mkPen(colour)
        brush = mkBrush(colour)

        self.hgltPnt = point
        self.hgltPnt.setPen(pen)
        self.hgltPnt.setBrush(brush)

    @Slot(bool)
    def _highlightPBs(self, show):
        """ Highlight points that are, or were, PBs. """
        if show:
            self._showPBs = True
            if self._regenerateCachedPBs[self.ySeries] or len(
                    self.hgltPBs[self.ySeries]) == 0:
                self.hgltPBs[self.ySeries] = self._getPBs()
                self._regenerateCachedPBs[self.ySeries] = False
            for idx in self.hgltPBs[self.ySeries]:
                pt = self.dataItem.scatter.points()[idx]
                colour = self.style['highlightPoint']['colour']
                pen = mkPen(colour)
                brush = mkBrush(colour)
                pt.setPen(pen)
                pt.setBrush(brush)
        else:
            self._showPBs = False
            for idx in self.hgltPBs[self.ySeries]:
                pt = self.dataItem.scatter.points()[idx]
                pt.resetPen()
                pt.resetBrush()

    def _getPBs(self):
        """ Return array of points that represent(ed) a PB in the current series. """
        # get number of top sessions and current y series
        col = self.data.quickNames[self.ySeries]
        num = self.parent.settings.value("pb/numSessions", cast=int)
        series = self.data[col]
        minBest = min(series[:num])  # minimum value to beat to be a PB
        idx = list(range(num))  # first num values will be PBs
        for n in range(num, len(series)):
            if series[n] >= minBest:
                idx.append(n)
                minBest = series[n]
        return idx

    @Slot(object)
    def mouseMoved(self, pos):
        if self.plotItem.sceneBoundingRect().contains(pos):
            mousePoint = self.plotItem.vb.mapSceneToView(pos)

            idx = int(mousePoint.x())
            if idx > min(self.data.dateTimestamps) and idx < max(
                    self.data.dateTimestamps):
                self._makePointDict(idx)
                pts = self.scatterPointsAtX(mousePoint, self.dataItem.scatter)
                if len(pts) != 0:
                    # could be multiple points at same x, so get closest point to mouse by y value
                    yVals = np.array([pt.pos().y() for pt in pts])
                    idx = (np.abs(yVals - mousePoint.y())).argmin()
                    self._highlightPoint(pts[idx])
            self.vLine.setPos(mousePoint.x())
            self.hLine.setPos(mousePoint.y())

    def _makePointDict(self, ts):
        # given timestamp in seconds, find nearest date and speed
        idx = (np.abs(self.data.dateTimestamps - ts)).argmin()
        self.setCurrentPoint(idx)

    @staticmethod
    def scatterPointsAtX(pos, scatter):
        """ Return a list of points on `scatter` under the x-coordinate of the 
            given position `pos`, ignoring the y-coord.
        """
        # Tried to subclass ScatterPlotItem and add this method there, but it
        # messed up the DateAxis
        x = pos.x()
        pw = scatter.pixelWidth()
        pts = []
        for s in scatter.points():
            sp = s.pos()
            ss = s.size()
            sx = sp.x()
            s2x = ss * 0.5
            if scatter.opts['pxMode']:
                s2x *= pw
            if x > sx - s2x and x < sx + s2x:
                pts.append(s)
        return pts[::-1]