def setUp(self): self.opts = rapi.opts() self.opts.share_ref_mem = False # for Travis rapi.init(self.opts) self.ref = rapi.ref(stuff.MiniRef) aligner = rapi.aligner(self.opts) self.batch = rapi.read_batch(2) reads = stuff.get_mini_ref_seqs() for row in reads: self.batch.append(row[0], row[1], row[2], rapi.QENC_SANGER) self.batch.append(row[0], row[3], row[4], rapi.QENC_SANGER) aligner.align_reads(self.ref, self.batch)
def setUp(self): self.opts = rapi.opts() rapi.init(self.opts)
def setUp(self): self.opts = rapi.opts() self.opts.share_ref_mem = False # for Travis rapi.init(self.opts) self.ref = rapi.ref(stuff.MiniRef)
def test_shutdown(self): rapi.init(rapi.opts()) r = rapi.shutdown() self.assertIsNone(r)
def test_init(self): r = rapi.init(rapi.opts()) self.assertIsNone(r)
def setUp(self): self.opts = rapi.opts() rapi.init(self.opts) self.w = rapi.read_batch(2)