def bind_table(table, **kwargs):
"""Alias for pysb.macros.bind_table with default binding sites."""
return macros.bind_table(table, 'bf', 'bf', **kwargs)
Initial(Noxa(bf=None), Parameter('Noxa_0', 1))
Initial(Hrk(bf=None), Parameter('Hrk_0', 1))
Initial(Puma(bf=None), Parameter('Puma_0', 1))
Initial(Bmf(bf=None), Parameter('Bmf_0', 1))
Initial(Bcl2(bf=None), Parameter('Bcl2_0', 1))
Initial(BclXL(bf=None), Parameter('BclXL_0', 1))
Initial(BclW(bf=None), Parameter('BclW_0', 1))
Initial(Mcl1(bf=None), Parameter('Mcl1_0', 1))
Initial(Bfl1(bf=None), Parameter('Bfl1_0', 1))
# This is the code shown for "Example Macro Call" (not printed here)
bind_table([[Bcl2, BclXL, BclW, Mcl1, Bfl1], [Bid, 66, 12, 10, 10, 53],
[Bim, 10, 10, 38, 10, 73], [Bad, 11, 10, 60, None, None],
[Bik, 151, 10, 17, 109, None], [Noxa, None, None, None, 19, None],
[Hrk, None, 92, None, None, None], [Puma, 18, 10, 25, 10, 59],
[Bmf, 24, 10, 11, 23, None]],
'bf',
'bf',
kf=1e3)
generate_equations(model)
num_rules = len(model.rules)
num_odes = len(model.odes)
print "BNGL Rules"
print "=========="
print num_rules, "rules"
print
print "ODEs"
print "===="
def bind_table(table, **kwargs):
"""Alias for pysb.macros.bind_table with default binding sites."""
return macros.bind_table(table, 'bf', 'bf', **kwargs)
Initial(Hrk(bf=None), Parameter('Hrk_0', 1))
Initial(Puma(bf=None), Parameter('Puma_0', 1))
Initial(Bmf(bf=None), Parameter('Bmf_0', 1))
Initial(Bcl2(bf=None), Parameter('Bcl2_0', 1))
Initial(BclXL(bf=None), Parameter('BclXL_0', 1))
Initial(BclW(bf=None), Parameter('BclW_0', 1))
Initial(Mcl1(bf=None), Parameter('Mcl1_0', 1))
Initial(Bfl1(bf=None), Parameter('Bfl1_0', 1))
# This is the code shown for "Example Macro Call" (not printed here)
bind_table([[ Bcl2, BclXL, BclW, Mcl1, Bfl1],
[Bid, 66, 12, 10, 10, 53],
[Bim, 10, 10, 38, 10, 73],
[Bad, 11, 10, 60, None, None],
[Bik, 151, 10, 17, 109, None],
[Noxa, None, None, None, 19, None],
[Hrk, None, 92, None, None, None],
[Puma, 18, 10, 25, 10, 59],
[Bmf, 24, 10, 11, 23, None]],
'bf', 'bf', kf=1e3)
generate_equations(model)
num_rules = len(model.rules)
num_odes = len(model.odes)
print "BNGL Rules"
print "=========="
print num_rules, "rules"
print
print "ODEs"