Example #1
0
    #from pyscf import df
    #auxbasis = df.addons.aug_etb_for_dfbasis(cell, beta=1.5, start_at=0)
    #from pyscf.pbc.df import mdf
    #mf.with_df = mdf.MDF(cell)
    #mf.auxbasis = auxbasis
    mf = density_fit(mf, auxbasis)
    mf.with_df.gs = (5, ) * 3
    vj = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv, with_k=False)[0]
    print(numpy.einsum('ij,ji->', vj, dm), 'ref=46.698942480902062')
    vj, vk = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv)
    print(numpy.einsum('ij,ji->', vj, dm), 'ref=46.698942480902062')
    print(numpy.einsum('ij,ji->', vk, dm), 'ref=37.348163681114187')
    print(numpy.einsum('ij,ji->', mf.get_hcore(cell), dm),
          'ref=-75.5758086593503')

    kpts = cell.make_kpts([2] * 3)[:4]
    from pyscf.pbc.df import DF
    with_df = DF(cell, kpts)
    with_df.auxbasis = 'weigend'
    with_df.gs = [5] * 3
    dms = numpy.array([dm] * len(kpts))
    vj, vk = with_df.get_jk(dms, exxdiv=mf.exxdiv, kpts=kpts)
    print(numpy.einsum('ij,ji->', vj[0], dms[0]) - 46.69784067248350)
    print(numpy.einsum('ij,ji->', vj[1], dms[1]) - 46.69814992718212)
    print(numpy.einsum('ij,ji->', vj[2], dms[2]) - 46.69526120279135)
    print(numpy.einsum('ij,ji->', vj[3], dms[3]) - 46.69570739526301)
    print(numpy.einsum('ij,ji->', vk[0], dms[0]) - 37.26974254415191)
    print(numpy.einsum('ij,ji->', vk[1], dms[1]) - 37.27001407288309)
    print(numpy.einsum('ij,ji->', vk[2], dms[2]) - 37.27000643285160)
    print(numpy.einsum('ij,ji->', vk[3], dms[3]) - 37.27010299675364)
Example #2
0
    auxbasis = "weigend"
    # from pyscf import df
    # auxbasis = df.addons.aug_etb_for_dfbasis(cell, beta=1.5, start_at=0)
    # from pyscf.pbc.df import mdf
    # mf.with_df = mdf.MDF(cell)
    # mf.auxbasis = auxbasis
    mf = density_fit(mf, auxbasis)
    mf.with_df.gs = (5,) * 3
    vj = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv, with_k=False)[0]
    print(numpy.einsum("ij,ji->", vj, dm), "ref=46.698942480902062")
    vj, vk = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv)
    print(numpy.einsum("ij,ji->", vj, dm), "ref=46.698942480902062")
    print(numpy.einsum("ij,ji->", vk, dm), "ref=37.348163681114187")

    kpts = cell.make_kpts([2] * 3)[:4]
    from pyscf.pbc.df import DF

    with_df = DF(cell, kpts)
    with_df.auxbasis = "weigend"
    with_df.gs = [5] * 3
    dms = numpy.array([dm] * len(kpts))
    vj, vk = with_df.get_jk(dms, exxdiv=mf.exxdiv, kpts=kpts)
    print(numpy.einsum("ij,ji->", vj[0], dms[0]) - 46.69784067248350)
    print(numpy.einsum("ij,ji->", vj[1], dms[1]) - 46.69814992718212)
    print(numpy.einsum("ij,ji->", vj[2], dms[2]) - 46.69526120279135)
    print(numpy.einsum("ij,ji->", vj[3], dms[3]) - 46.69570739526301)
    print(numpy.einsum("ij,ji->", vk[0], dms[0]) - 37.27020025046015)
    print(numpy.einsum("ij,ji->", vk[1], dms[1]) - 37.27047172558580)
    print(numpy.einsum("ij,ji->", vk[2], dms[2]) - 37.27046412080765)
    print(numpy.einsum("ij,ji->", vk[3], dms[3]) - 37.27056060718295)
Example #3
0
    auxbasis = 'weigend'
    #from pyscf import df
    #auxbasis = df.addons.aug_etb_for_dfbasis(cell, beta=1.5, start_at=0)
    #from pyscf.pbc.df import mdf
    #mf.with_df = mdf.MDF(cell)
    #mf.auxbasis = auxbasis
    mf = density_fit(mf, auxbasis)
    mf.with_df.mesh = (n,) * 3
    vj = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv, with_k=False)[0]
    print(numpy.einsum('ij,ji->', vj, dm), 'ref=46.698942480902062')
    vj, vk = mf.with_df.get_jk(dm, exxdiv=mf.exxdiv)
    print(numpy.einsum('ij,ji->', vj, dm), 'ref=46.698942480902062')
    print(numpy.einsum('ij,ji->', vk, dm), 'ref=37.348163681114187')
    print(numpy.einsum('ij,ji->', mf.get_hcore(cell), dm), 'ref=-75.5758086593503')

    kpts = cell.make_kpts([2]*3)[:4]
    from pyscf.pbc.df import DF
    with_df = DF(cell, kpts)
    with_df.auxbasis = 'weigend'
    with_df.mesh = [n] * 3
    dms = numpy.array([dm]*len(kpts))
    vj, vk = with_df.get_jk(dms, exxdiv=mf.exxdiv, kpts=kpts)
    print(numpy.einsum('ij,ji->', vj[0], dms[0]) - 46.69784067248350)
    print(numpy.einsum('ij,ji->', vj[1], dms[1]) - 46.69814992718212)
    print(numpy.einsum('ij,ji->', vj[2], dms[2]) - 46.69526120279135)
    print(numpy.einsum('ij,ji->', vj[3], dms[3]) - 46.69570739526301)
    print(numpy.einsum('ij,ji->', vk[0], dms[0]) - 37.26974254415191)
    print(numpy.einsum('ij,ji->', vk[1], dms[1]) - 37.27001407288309)
    print(numpy.einsum('ij,ji->', vk[2], dms[2]) - 37.27000643285160)
    print(numpy.einsum('ij,ji->', vk[3], dms[3]) - 37.27010299675364)
Example #4
0
    n = 11
    cell = pgto.Cell()
    cell.a = numpy.diag([L,L,L])
    cell.mesh = numpy.array([n,n,n])

    cell.atom = '''He    3.    2.       3.
                   He    1.    1.       1.'''
    #cell.basis = {'He': [[0, (1.0, 1.0)]]}
    #cell.basis = '631g'
    #cell.basis = {'He': [[0, (2.4, 1)], [1, (1.1, 1)]]}
    cell.basis = 'ccpvdz'
    cell.verbose = 0
    cell.build(0,0)

    nao = cell.nao_nr()
    numpy.random.seed(1)
    kpts = numpy.random.random((4,3))
    kpts[3] = -numpy.einsum('ij->j', kpts[:3])
    with_df = DF(cell, kpts)
    with_df.auxbasis = 'weigend'
    with_df.mesh = [n] * 3
    mo =(numpy.random.random((nao,nao)) +
         numpy.random.random((nao,nao))*1j)
    eri = with_df.get_eri(kpts).reshape((nao,)*4)
    eri0 = numpy.einsum('pjkl,pi->ijkl', eri , mo.conj())
    eri0 = numpy.einsum('ipkl,pj->ijkl', eri0, mo       )
    eri0 = numpy.einsum('ijpl,pk->ijkl', eri0, mo.conj())
    eri0 = numpy.einsum('ijkp,pl->ijkl', eri0, mo       )
    eri1 = with_df.ao2mo(mo, kpts)
    print(abs(eri1-eri0).sum())
Example #5
0
    n = 11
    cell = pgto.Cell()
    cell.a = numpy.diag([L,L,L])
    cell.mesh = numpy.array([n,n,n])

    cell.atom = '''He    3.    2.       3.
                   He    1.    1.       1.'''
    #cell.basis = {'He': [[0, (1.0, 1.0)]]}
    #cell.basis = '631g'
    #cell.basis = {'He': [[0, (2.4, 1)], [1, (1.1, 1)]]}
    cell.basis = 'ccpvdz'
    cell.verbose = 0
    cell.build(0,0)

    nao = cell.nao_nr()
    numpy.random.seed(1)
    kpts = numpy.random.random((4,3))
    kpts[3] = -numpy.einsum('ij->j', kpts[:3])
    with_df = DF(cell, kpts)
    with_df.auxbasis = 'weigend'
    with_df.mesh = [n] * 3
    mo =(numpy.random.random((nao,nao)) +
         numpy.random.random((nao,nao))*1j)
    eri = with_df.get_eri(kpts).reshape((nao,)*4)
    eri0 = numpy.einsum('pjkl,pi->ijkl', eri , mo.conj())
    eri0 = numpy.einsum('ipkl,pj->ijkl', eri0, mo       )
    eri0 = numpy.einsum('ijpl,pk->ijkl', eri0, mo.conj())
    eri0 = numpy.einsum('ijkp,pl->ijkl', eri0, mo       )
    eri1 = with_df.ao2mo(mo, kpts)
    print(abs(eri1-eri0).sum())