def main():
db_con = init_sync()
if (not os.path.exists('model')):
if (not os.path.exists('data_text')):
print("Папка создана")
os.mkdir('data_text')
save_txt.save_text_db_to_txt(db_con)
word2vec.create_w2v_model()
persons = get_persons(db_con)
places = get_places(db_con)
spark = SparkSession \
.builder \
.appName("SimpleApplication") \
.getOrCreate()
model = Word2VecModel.load(PATH)
pprint("Поиск контекстных синонимов персон:")
persons_synonyms = get_synonyms(persons, 5, model, spark)
insert_to_persons_synonyms(db_con, persons, persons_synonyms)
print_elem(persons, persons_synonyms)
pprint("Поиск контекстных синонимов достопримечательностей:")
places_synonyms = get_synonyms(places, 5, model, spark)
insert_to_places_synonyms(db_con, places, places_synonyms)
print_elem(places, places_synonyms)
spark.stop()
def transform(self, train_data, is_test=False):
model = Word2VecModel.load(self.model_path)
item2vec = model.getVectors()
train_data_seq = transform_trainable(train_data, test=is_test)
train_data_seq = model.transform(train_data_seq)
# step5:Get the click sequence
train_data_click = train_data.filter(
"action_type='clickout item'").select('user_id', "session_id",
'timestamp', 'step',
'reference', 'impressions')
train_data_click = train_data_click.withColumn(
'impressions', F.split(train_data.impressions,
'\|')).withColumn("impressions",
F.explode("impressions"))
cond = train_data_click.impressions == item2vec.word
df_out = train_data_click.join(item2vec, cond, how='left').select(
'user_id', "session_id", 'timestamp', 'step', 'reference',
'impressions', 'vector')
df_out = df_out.join(train_data_seq,
df_out.session_id == train_data_seq.session_id,
how='left').drop(train_data_seq.session_id)
# step6: Find and sort the similarity between the session vector and the exposure vector
df_out = df_out.withColumn('sim', getCosinDis('vector', 'item2vec'))
df_out = df_out.withColumn("sim", df_out.sim.cast('float')).withColumn(
"rank",
F.rank().over(
Window.partitionBy("session_id", 'timestamp',
"step").orderBy("sim")))
return df_out
def startup():
# Download the model
import findspark
findspark.init()
import pyspark # only run after findspark.init()
from pyspark.sql import SparkSession
spark = SparkSession.builder.getOrCreate()
print("Spark session started\n\n")
aws_model_cmd = f"aws s3 cp --recursive s3://{bucket_name}/{s3_dir} {local_dir}/{s3_dir}"
# os.system(aws_model_cmd)
# Download the vectors
aws_vector_cmd = f"aws s3 cp --recursive s3://{bucket_name}/{title_vector} {local_dir}/{title_vector}"
# os.system(aws_vector_cmd)
figures_cmd = f"aws s3 cp --recursive s3://{bucket_name}/{figures} dashboard/templates/static"
os.system(figures_cmd)
# Load the Model and data
saveword2vec_path = f"{local_dir}/{s3_dir}"
model_word2vec = Word2VecModel.load(saveword2vec_path)
title_vectors_df = spark.read.parquet(f"{local_dir}/{title_vector}")
return spark, model_word2vec, title_vectors_df
def loadModel(path):
'''
Load Word2Vec model
Input : - path
Output : - model [Word2Vec model data frame]
'''
model = Word2VecModel.load(path)
return model
def overlappingNgramWord2VecEncode(self, n = None, windowSize = None, vectorSize = None, fileName = None, sc = None):
'''
Encodes a protein sequence by converting it into n-grams and
then transforming it into a Word2Vec feature vector.
If given word2Vec file name, then this function encodes a protein
sequence by converting it into n-grams and then transforming it using
pre-trained word2Vec model read from that file
Attribute:
n (int): The number of words in an n-gram
windowSize (int): width of the window used to slide across the \
squence, context words from [-window,window]
vectorSize (int): dimension of the feature vector
fileName (str): filename of Word2Vec model
Returns:
dataset with features vector added to original dataset
'''
# Create n-grams out of the sequence
# E.g., 2-gram IDCGH, ... =>[ID, DC, CG, GH, ...]
data = sequenceNgrammer.ngram(self.data, n, "ngram")
if not (n == None and windowSize == None and vectorSize == None):
# Convert n-grams to W2V freature vector
# [ID, DC, CG, GH, ...] => [0.1234, 0.2394, ...]
word2Vec = Word2Vec()
word2Vec.setInputCol("ngram") \
.setOutputCol(self.outputCol) \
.setNumPartitions(8) \
.setWindowSize(windowSize) \
.setVectorSize(vectorSize) \
self.model = word2Vec.fit(data)
elif fileName != None and sc != None:
reader = Word2VecModel()
self.model = reader.load(sc, fileName)
print(f"model file : {fileName} \n \
inputCol : {self.model.getInputCol()} \n \
windowSize : {self.model.getWindowSize()} \n \
vectorSize : {self.model.getVectorSize()}")
self.model.setOutputCol(self.outputCol)
else:
raise Exception("Either provide word2Vec file (filename) + SparkContext (sc), \
or number of words(n) + window size(windowSize) \
+ vector size (vetorSize), for function parameters")
return
return self.model.transform(data)
def get_vectors_for_df(self, df):
"""
Note:This method is used to get the vectors from the text in datafram
Author:Aliabbas Bhojani
"""
logging.info("Getting the vectors for the given dataframe")
if os.path.exists(self.model_dir + self.model_name):
model = Word2VecModel.load(self.model_dir + self.model_name + "/")
output_df = model.transform(df)
return output_df
else:
logging.info("No Models Found, retrain the model")
def load_model(
self,
cloud_path: str,
model_name: str,
) -> Word2VecModel:
"""
Load a previously saved Word2Vec model object to memory.
"""
if not model_name.endswith(".sparkml"):
model_name += ".sparkml"
self.model = Word2VecModel.load(cloud_path + "/" + model_name)
return self.model
def configure_processing(self):
""" A function to operate on input raw data generates report in desired format.
"""
# Load report making data
print "============ NLP methods starts on report data ==================="
df = helper_method_process_data(self.total_data, self.spark_context,
self.sql_context)
print "============ NLP methods finished on report data ==================="
# load pre-generated model
print "============= Loading pre-build model ======================="
model_path = self.model_save_path + self.model_date + "/"
model = Word2VecModel.load(model_path)
print "====================== Model loading completed =============="
report_data = df.rdd.map(lambda a: a.asDict()).collect()
df.unpersist()
del df
### report the result
count_id = 1
self.es = Elasticsearch([{
'host': self.es_output_host,
'port': self.es_output_port
}])
print "============ Report seeding to Elastic Search start ==========="
output_index_name = self.es_output_index + '-' + datetime.now(
).strftime("%Y-%m-%d-%H-%M-%S")
print "============ Result will be pushed in index:", output_index_name, "=============="
for one_line_report in report_data:
if len(one_line_report['features']) < 3:
continue
for word2vec_keyword in list(set(one_line_report['features'])):
try:
synonyms = model.findSynonyms(word2vec_keyword, 10)
self.send_result_to_elasticsearch(word2vec_keyword,
synonyms, count_id,
output_index_name)
count_id = count_id + 1
except Exception as e:
'''
It will come here if model did not get the current word'''
print e.message
pass
print "================== Report seeding Ended============="
def get_synonyms(word: str, count: int):
spark = SparkSession \
.builder \
.appName("SimpleApplication") \
.getOrCreate()
model = Word2Vec.load('/home/pok/sem/project/models/model0mincount/model')
model_fitted = Word2VecModel.load(
'/home/pok/sem/project/models/model0mincount/fitted')
synonyms = model_fitted.findSynonyms(word, count)
synonyms.select("word", fmt("similarity", 5).alias("similarity")).show()
spark.stop()
return synonyms
def main():
if not os.path.exists('model'):
save_txt.save_text_db_to_txt()
word2vec.create_w2v_model()
with SparkSession.builder.appName(
"SimpleApplication").getOrCreate() as spark_session:
model = Word2VecModel.load(PATH)
persons = mongo.selectAll('persons')
places = mongo.selectAll('places')
pprint("Поиск контекстных синонимов персон:")
persons_synonyms = word2vec.find_synonyms(persons, model,
spark_session)
pprint(persons_synonyms)
pprint("Поиск контекстных синонимов достопримечательностей:")
places_synonyms = word2vec.find_synonyms(places, model, spark_session)
pprint(places_synonyms)
def init():
''' Initialize libraries. '''
print('Initializing...')
sconf = pyspark.SparkConf().setAll([
('spark.executor.memory', config.spark_executor_memory),
('spark.executor.instances', config.spark_executor_instances),
('spark.executor.cores', config.spark_executor_cores),
#('spark.cores.max', config.spark_cores_max),
('spark.driver.memory', config.spark_driver_memory),
('master', config.spark_master),
])
global spark, df_all, w2v_model
spark = SparkSession.builder.appName('similarity2').config(
conf=sconf, ).getOrCreate()
spark.sparkContext.setLogLevel(config.spark_log_level)
df_all = spark.read.parquet(config.input_dir).sample(
withReplacement=False,
fraction=config.spark_fraction,
seed=config.spark_seed)
w2v_model = Word2VecModel.load(config.model_file)
def main():
spark = SparkSession.builder \
.appName("Spark CV-job ad matching") \
.config("spark.some.config.option", "some-value") \
.master("local[*]") \
.getOrCreate()
df_categories = spark.read.json("allcategories4rdd/allcategories.jsonl")
tokenizer = Tokenizer(inputCol="skillText", outputCol="words")
tokenized = tokenizer.transform(df_categories)
remover = StopWordsRemover(inputCol="words", outputCol="filtered")
removed = remover.transform(tokenized)
stripped = removed.select('filtered').rdd.map(lambda x: strip_punctuation(x[0]))\
.map(lambda x: Row(filtered=x)).toDF(['filtered'])
# word2vec = Word2Vec(vectorSize=100, inputCol="filtered", outputCol="result")
# model = word2vec.fit(stripped)
#model.save("word2vec-model")
model = Word2VecModel.load("word2vec-model")
synonyms = model.findSynonyms(sys.argv[1], 10)
synonyms.show(truncate=False)
def overlapping_ngram_word2vec_encode(self,
data=None,
inputCol=None,
outputCol=None,
n=None,
windowSize=None,
vectorSize=None,
fileName=None,
sc=None):
'''Encodes a protein sequence by converting it into n-grams and
then transforming it into a Word2Vec feature vector.
If given word2Vec file name, then this function encodes a protein
sequence by converting it into n-grams and then transforming it using
pre-trained word2Vec model read from that file
Attribute
---------
data (DataFrame): input data to be encoded [None]
inputCol (str): name of the input column [None]
outputCol (str): name of the output column [None]
n (int): The number of words in an n-gram [None]
windowSize (int): width of the window used to slide across the \
squence, context words from -window to window \
[None]
vectorSize (int): dimension of the feature vector [None]
fileName (str): filename of Word2Vec model [None]
Returns
-------
dataset with features vector added to original dataset
'''
if data is not None:
self.data = data
if inputCol is not None:
self.inputCol = inputCol
if outputCol is not None:
self.outputCol = outputCol
if self.data is None:
raise ValueError("Class variable data is not defined, please pass\
in a dataframe into the data parameter")
# Create n-grams out of the sequence
# E.g., 2-gram IDCGH, ... =>[ID, DC, CG, GH, ...]
data = sequenceNgrammer.ngram(self.data, n, "ngram")
if not (n == None and windowSize == None and vectorSize == None):
# Convert n-grams to W2V freature vector
# [ID, DC, CG, GH, ...] => [0.1234, 0.2394, ...]
word2Vec = Word2Vec()
word2Vec.setInputCol("ngram") \
.setOutputCol(self.outputCol) \
.setNumPartitions(8) \
.setWindowSize(windowSize) \
.setVectorSize(vectorSize) \
self.model = word2Vec.fit(data)
elif fileName != None and sc != None:
reader = Word2VecModel()
self.model = reader.load(sc, fileName)
print(f"model file : {fileName} \n \
inputCol : {self.model.getInputCol()} \n \
windowSize : {self.model.getWindowSize()} \n \
vectorSize : {self.model.getVectorSize()}")
self.model.setOutputCol(self.outputCol)
else:
raise Exception(
"Either provide word2Vec file (filename) + SparkContext (sc), \
or number of words(n) + window size(windowSize) \
+ vector size (vetorSize), for function parameters"
)
return
return self.model.transform(data)
import math
from pyspark.ml.feature import Word2VecModel
from pyspark_ml.app_root import get_root_path
from pyspark.ml.feature import PCA
import matplotlib.pyplot as plt
from pyspark.ml.clustering import KMeans
from mpl_toolkits.mplot3d import Axes3D
project_root_path = get_root_path()
from pyspark.sql import SparkSession
spark = SparkSession.builder.appName('evel_word2vec').getOrCreate()
#load model
modelPath = project_root_path + "/models/word2vec-model"
loadedModel = Word2VecModel.load(modelPath)
# loadedModel.findSynonyms('beijing',15).show(truncate=False)
wordVectorsDF = loadedModel.getVectors()
vocabSize = wordVectorsDF.count()
print("Vocabulary Size: ", vocabSize)
loadedModel.findSynonyms('coffee', 3).show(truncate=False)
# loadedModel.getVectors().show(truncate=False)
dfW2V = wordVectorsDF.select('vector').withColumnRenamed('vector', 'features')
numComponents = 3
pca = PCA(k=numComponents, inputCol='features', outputCol='pcaFeatures')
model = pca.fit(dfW2V)
dfComp = model.transform(dfW2V).select("pcaFeatures")
num_iterations = sys.argv[5]
vector_size = sys.argv[6]
debug_flag = sys.argv[7]
relations_result_file = config.get('DataSection', 'relations_result_file')
spark = SparkSession \
.builder \
.appName("WikiFindSynonyms") \
.config("spark.executor.memory", "2g") \
.config("spark.driver.memory", "4g") \
.config("spark.driver.maxResultSize", "1g") \
.config("spark.default.parallelism", "4") \
.getOrCreate()
model = Word2VecModel.load(sys.argv[1])
modelDF = model.getVectors()
modelDF.show()
print("Total number of records in modelDF = %d" % modelDF.count())
modelDF = modelDF.repartition(1000, 'word')
testDataDF = spark.read.csv(sys.argv[2], header=True)
testDataDF.show()
print("Total number of records in testDataDF = %d" % testDataDF.count())
testDataDF = testDataDF.join(modelDF, testDataDF.word1 == modelDF.word,'inner')\
.select(testDataDF.word1, testDataDF.word2, \
testDataDF.word3, modelDF.vector)
testDataDF.show()
testDataDF = testDataDF.withColumnRenamed('vector', 'vec1')
def load_model(self, path_to_model):
"""Load Word2Vec model from model_path."""
from pyspark.ml.feature import Word2VecModel
w2vec_model = Word2VecModel.load(path_to_model)
return (w2vec_model)
.config("spark.rpc.message.maxSize", "2047") \
.config("spark.sql.catalogImplementation", "in-memory") \
.config("spark.dynamicAllocation.enabled", "false") \
.getOrCreate()
sc = spark.sparkContext
else:
spark = None
sc = None
# load model
if args.modelType == "glint":
from ml_glintword2vec import ServerSideGlintWord2VecModel
model = ServerSideGlintWord2VecModel.load(args.modelPath)
elif args.modelType == "ml":
model = Word2VecModel.load(args.modelPath)
else:
model = GensimWord2Vec.load(args.modelPath)
# get required vectors with model
words1, words2, wordvecs1, wordvecs2 = words_and_vecs_from_csv(
spark, model, args.csvPath)
simlex_wordvecs = wordvecs_from_simlex(spark, model, args.language)
ws353_wordvecs = wordvecs_from_wordsim353(spark, model, args.language)
predicted_synonyms = word_synonyms(words1, model)
predicted_words2 = word_analogies(wordvecs1, wordvecs2, words1, words2)
# stop model
if args.modelType == "glint":
model.stop()
dataset = dataset.withColumn("month", (F.col("month") - 1) / (12 - 1))
dataset = dataset.withColumn("day", (F.col("day") - 1) / (31 - 1))
dataset = dataset.withColumn("hour", (F.col("hour") - 0) / (23 - 0))
dataset = dataset.withColumn("minute", (F.col("minute") - 0) / (59 - 0))
dataset = dataset.withColumn("second", (F.col("second") - 0) / (59 - 0))
# Word2Vec
dataset = dataset.withColumn(
'categorical',
F.concat(F.array('rat'), F.array('mcc'), F.array('mnc'), F.array('msin'),
F.array('tac'), F.array('snr')))
word2Vec_output_path = "{}/data/word2VecModel.bin".format(base_path)
word2Vec = Word2VecModel.load(word2Vec_output_path)
dataset = word2Vec.transform(dataset)
# VectorAssembler
sizeHint = VectorSizeHint(inputCol="vcategorical",
handleInvalid="skip",
size=50)
dataset = sizeHint.transform(dataset)
vector_assembler_output_path = "{}/data/vectorAssemblerW2VModel.bin".format(
base_path)
vector_assembler = VectorAssembler.load(vector_assembler_output_path)
dataset = vector_assembler.transform(dataset)
# Clasificación
end = time.time()
print("数据拆分用时：{}".format(end - start))
"""
对主治功能总字段进行词转向量
"""
start = time.time()
# 创建word2Vec对象并指定配置信息（维度信息，输入列，输出列）
# word2Vec = Word2Vec(vectorSize=300, minCount=0, inputCol="d_func", outputCol="d_func_result")
# 使用word2Vec对象对指定列进行转化
# hypertension_model = word2Vec.fit(manbing)
# 持久化模型(费时操作只执行一次)
# hypertension_model.save("./WV_model/")
model = Word2VecModel.load("./WV_model/")
# 对训练集的数据进行词转向量的转化
manbing = model.transform(train_set)
end = time.time()
print("词转向量用时：{}".format(end - start))
"""
训练数据构建模型
"""
start = time.time()
# 从源数据中指定特征列
assembler = VectorAssembler(inputCols=["d_func_result"], outputCol="features")
# assembler对象是一个transformer,将多列数据转化为单列的向量列(决策树可以识别的类型)
# train_set2 = assembler.transform(manbing)
PATH = 'model/kurs_model/'
from pyspark.sql import SparkSession
from pyspark.ml.feature import Word2VecModel
from pprint import pprint
test_words = [
"дом", "бочаров", "документ", "деньги", "гараж", "волга", "дума", "закон",
"полиция", "врач"
]
spark = SparkSession \
.builder \
.appName("SimpleApplication") \
.getOrCreate()
model = Word2VecModel.load(PATH)
pprint(
"Контекстные синонимы слов, полученные из модели, обученной на статьях:")
for test_word in test_words:
pprint("-" * 20)
pprint(test_word)
result = model.findSynonyms(test_word, 5).collect()
for el in result:
pprint(el[0])
spark.stop()
def Validate(ngrams \
, sampleSizes \
, ctxSize \
, sqc \
, seqs \
, outFile \
, minval \
, maxval \
, avg \
, nlines):
accuracy = []
gramSize = GramSize(ctxSize, lookahead)
c1 = (((maxval - minval) * 1.0) / nlines) / avg
c2 = ((minval * 1.0) / nlines) / avg
print seqs.count()
ngrams = ngrams.repartition(1 << nPartLog)
ngrams.cache()
#we will validate separately for each vector size
for vecSize in vecSizes:
print '======TESTING FOR VECTOR SIZE', vecSize
#start fresh
old_ngrams = ngrams
ngrams = ngrams.withColumn('correct', lit(0))
#use models from each sample
modelId = 0
for sampleSize in sampleSizes:
w2v = Word2VecModel.load(w2vFile(outDir, ctxSize, sampleSize, vecSize))
lrmodels = []
for dim in range(0, vecSize):
lrmodels.append(LinearRegressionModel.load(lrmFile(outDir, ctxSize, sampleSize, vecSize, dim)))
success = 0
fail = 0
unopt = 0
#add columns to store model success and failure
modelSucc = 'succ_' + str(modelId)
modelFail = 'fail_' + str(modelId)
modelUnopt = 'unopt_' + str(modelId)
seqs = seqs.withColumn(modelSucc, lit(0)) \
.withColumn(modelFail, lit(0)) \
.withColumn(modelUnopt, lit(0))
modelId = modelId + 1
ngrams = ngrams \
.withColumn('predSeq', lit(''))
#create initial feature vector
#transform each word into a cluster center
words, d, centers = ClusterWords(w2v \
, seqs \
)
#record correctness for this model only
old_ngrams = ngrams
ngrams = ngrams.withColumn('sample_correct', lit(0)).withColumn('sample_confi', lit(1.0))
for nextPos in range(0,lookahead):
#build the feature vector
ngrams = BuildSubstringFeature(ngrams, w2v, nextPos, nextPos + ctxSize, ctxSize, lookahead,)
#build the prediction vector
ngrams = BuildPredictionVector(ngrams, lrmodels, ctxSize, vecSize)
#now assign a cluster id to each prediction vector
old_ngrams = ngrams
ngrams = centers.transform(ngrams).withColumnRenamed('cluster', 'predWord').withColumnRenamed('vector', 'predictionVector')
#get the predicted word
ngrams = ngrams.join(broadcast(words), words.cluster == ngrams.predWord, 'inner') \
.drop('cluster') #\
#calculate the cosine similarity between prediction vector and center vector
epsilon = 0.0001
def CosineSimi (v1, v2):
d1 = DenseVector(v1)
d2 = DenseVector(v2)
n1 = d1.norm(2)
n2 = d2.norm(2)
return float(d1.dot(d2) / (n1 * n2))
cossim = udf(lambda v1, v2: CosineSimi(v1, v2), DoubleType())
ngrams = ngrams.withColumn('simi', cossim('centerVector', 'predictionVector'))
ngrams = ngrams.drop('centerVector').drop('predictionVector')
#update predicted sequence
ngrams = ngrams.withColumn('predSeq', concat_ws(' ', 'predSeq', 'word'))
ngrams = ngrams.withColumn('predSeq', ltrim(ngrams.predSeq))
#get actual sequence
ngrams = CreateSubstring(ngrams, 'sentence', 'actualSeq', gramSize, ' ', ctxSize, ctxSize + nextPos + 1)
#now get the cluster id for the predicted word in the sentence
ngrams = BuildLabelVector(ngrams, w2v, ctxSize, lookahead, nextPos).withColumnRenamed('labelVec', 'vector').drop('ngrams')
ngrams = centers.transform(ngrams).drop('vector')
#and host latency for actual word
ngrams = ngrams.join(broadcast(words), 'cluster', 'inner') \
.drop('word') \
.drop('centerVector') #\
#record correctness
ngrams = ngrams.withColumn('round_correct', when((ngrams.predWord != ngrams.cluster) | (ngrams.simi < confidence), 0).otherwise(nextPos + 1)).drop('predWord').drop('cluster')
ngrams = ngrams.withColumn('sample_correct', when(ngrams.sample_correct + 1 == ngrams.round_correct, ngrams.round_correct).otherwise(ngrams.sample_correct))
#get overall correctness
ngrams = ngrams.withColumn('correct', greatest('sample_correct', 'correct'))
#get binary correctness
ngrams = ngrams.withColumn('binary_correct', when(ngrams.correct >= nextPos + 1, 1).otherwise(0))
ngrams = ngrams.withColumn('sample_confi', when(ngrams.binary_correct == 1, 1.0).otherwise(least(ngrams.simi, ngrams.sample_confi)))
ngrams = ngrams.withColumn('simi', when(ngrams.binary_correct == 1, ngrams.simi).otherwise(ngrams.sample_confi))
ngrams = ngrams.withColumn('predSeq', when((ngrams.binary_correct == 1) | (ngrams.simi < confidence), ngrams.actualSeq).otherwise(ngrams.predSeq))
ngrams = ngrams.withColumn('succ_wt', when(ngrams.binary_correct == 1, ngrams.wt).otherwise(0))
ngrams = ngrams.withColumn('fail_wt', when((ngrams.binary_correct == 1) | (ngrams.simi < confidence), 0).otherwise(ngrams.wt))
ngrams = ngrams.withColumn('unopt_wt', when((ngrams.binary_correct == 0) & (ngrams.simi < confidence), ngrams.wt).otherwise(0))
ngrams = ngrams.drop('simi')
#now summarize success and failure rates by predicted sequence
seqWts = ngrams.groupBy('predSeq').agg(sum('succ_wt').alias('succ_wt'), sum('fail_wt').alias('fail_wt'), sum('unopt_wt').alias('unopt_wt'))
#update sequences table
seqs = seqWts.join(broadcast(seqs), seqWts.predSeq==seqs.word, 'right_outer').drop('predSeq').fillna(-c2/c1, ['succ_wt', 'fail_wt', 'unopt_wt'])
scaleback = udf(lambda s: float(s*c1 + c2), DoubleType())
seqs = seqs.withColumn(modelSucc, col(modelSucc) + scaleback(seqs.succ_wt)).drop('succ_wt')
seqs = seqs.withColumn(modelFail, col(modelFail) + scaleback(seqs.fail_wt)).drop('fail_wt')
seqs = seqs.withColumn(modelUnopt, col(modelUnopt) + scaleback(seqs.unopt_wt)).drop('unopt_wt')
seqs.cache()
aggregated = seqs.agg(sum(modelSucc), sum(modelFail), sum(modelUnopt))
aggregated.cache()
new_success = aggregated.head()['sum(' + modelSucc + ')']
new_fail = aggregated.head()['sum(' + modelFail + ')']
new_unopt = aggregated.head()['sum(' + modelUnopt + ')']
print nextPos, new_success - success, new_fail - fail, new_unopt - unopt
success = new_success
fail = new_fail
unopt = new_unopt
#end for testing for each model for a particular vector size
#end for each vector size
seqs.orderBy('succ_0', ascending=False).write.mode('overwrite').csv(outputFile(outDir, ctxSize, vecSize, sampleSizes))
return accuracy
for row in partition:
sentence = re.sub("<.*?>", "", row.sentence) # 替换掉标签数据
words = cut_sentence(sentence)
yield row.article_id, row.channel_id, words
words_df = article_data.rdd.mapPartitions(segmentation).toDF(["article_id","channel_id","words"])
words_df.show()
# 训练#17频道的word2vec
# w2v_model = Word2Vec(vectorSize=100,inputCol='words',outputCol='model',minCount=3)
# model = w2v_model.fit(words_df)
# model.save("hdfs://hadoop1:9000/headlines/models/word2vec_model_17")
# 1.加载模型，得到每个词的向量
from pyspark.ml.feature import Word2VecModel
wv = Word2VecModel.load("hdfs://hadoop1:9000/headlines/models/word2vec_model_17")
vectors = wv.getVectors()
vectors.show()
# 2.获取该频道的文章画像，得到文章画像的关键词，获取这20个关键词对应的词向量
article_profile = w2v.spark.sql("select * from article_profile where channel_id=17 limit 10")
# 3.计算得到文章每个词的向量,利用explode将keywords字典炸开得到keyword和weight
article_profile.registerTempTable('profile')
keyword_weight = w2v.spark.sql("select article_id,channel_id,keyword,weight from profile "
"LATERAL VIEW explode(keywords) as keyword,weight")
keyword_weight.show()
# 4.将文章画像的keyword_weight和w2v模型合并，得到每篇文章20个关键词的词向量
_keywords_vector = keyword_weight.join(vectors,vectors.word==keyword_weight.keyword,how='inner')
_keywords_vector.show()
udf(preprocess_text, ArrayType(StringType()))(question_dataframe.question)) # In[9]: #print(question_tokenized_df.take(1)) # In[10]: ###now we have to generate the vectors for this given question from pyspark.ml.feature import Word2Vec, Word2VecModel saveword2vec_path = os.getcwd() + '/dataset/word2vecmodel' # In[11]: model_word2vec = Word2VecModel.load(saveword2vec_path) # In[12]: question_with_vector_df = model_word2vec.transform(question_tokenized_df) # In[13]: #taking only the dense vector question_dense_vec = question_with_vector_df.first()["features"] # In[14]: #Now that we have everything in place, we just need to calculate the similarity score import numpy as np
['article_id', 'channel_id', 'words'])
print("分词数据", words_df.take(10))
# 二、word2vec训练分词数据
from pyspark.ml.feature import Word2Vec
w2v_model = Word2Vec(vectorSize=100,
inputCol='words',
outputCol='vector',
minCount=3)
model = w2v_model.fit(words_df)
model.write().overwrite().save("models/word2vec_model/python.word2vec")
from pyspark.ml.feature import Word2VecModel
w2v_model = Word2VecModel.load("models/word2vec_model/python.word2vec")
vectors = w2v_model.getVectors()
vectors.show()
# 三、关键词获取(tfidf)
# tdidf
# 词频，即tf
from pyspark.ml.feature import CountVectorizer
# vocabSize是总词汇的大小，minDF是文本中出现的最少次数
cv = CountVectorizer(inputCol="words",
outputCol="countFeatures",
vocabSize=200 * 10000,
minDF=1.0)
# 训练词频统计模型
cv_model = cv.fit(words_df)
def compute_article_similar(self, articleProfile):
"""
计算增量文章与历史文章的相似度
:param articleProfile:
:return:
"""
from pyspark.ml.feature import Word2VecModel
def avg(row):
x = 0
for v in row.vectors:
x += v
return row.article_id, row.channel_id, x / len(row.vectors)
for channel_id, channel_name in CHANNEL_INFO.items():
profile = articleProfile.filter(
'channel_id = {}'.format(channel_id))
wv_model = Word2VecModel.load(
"hdfs://hadoop1:9000/headlines/models/channel_%d_%s.word2vec" %
(channel_id, channel_name))
vectors = wv_model.getVectors()
# 计算向量
profile.registerTempTable("incremental")
articleKeywordsWeights = self.spark.sql(
"select article_id,channel_id,keyword,weight from profile\
LATERAL VIEW explode(keywords) as keyword,weight"
)
articleKeywordsWeightsAndVectors = articleKeywordsWeights.join(
vectors, vectors.word == articleKeywordsWeights.keyword,
"inner")
articleKeywordVectors = articleKeywordsWeightsAndVectors.rdd.map(
lambda r: (r.article_id, r.channel_id, r.keyword, r.weight * r.
vector)).toDF([
"article_id", "channel_id", "keyword",
"weightVector"
])
articleKeywordVectors.registerTemptable("Temptable")
articleVector = self.spark.sql(
"select article_id, min(channel_id) channel_id, collect_set(weightVector) vectors from temptable group by article_id"
).rdd.map(avg).toDF(["article_id", "channel_id", "articleVector"])
# 写入数据库hive
def toArray(row):
return row.article, row.channel_id, [
float(i) for i in row.articleVector.toArray()
]
articleVector = articleVector.rdd.map(toArray).toDF(
["article_id", "channel_id", "articleVector"])
articleVector.write.insertInto("article_vector")
import gc
del wv_model
del vectors
del articleKeywordsWeights
del articleKeywordsWeightsAndVectors
del articleKeywordVectors
gc.collect()
# 得到历史文章向量，转换成vector格式，使用LSH求相似文章
from pyspark.ml.linalg import Vectors
from pyspark.ml.feature import BucketedRandomProjectionLSH
train = self.spark.sql(
"select * from article_vector where channel_id=%d" %
channel_id)
def _array_to_vector(row):
return row.article_id, Vectors.dense(row.articleVector)
train = train.rdd.map(_array_to_vector).toDF(
["article_id", "articleVector"])
test = articleVector.rdd.map(_array_to_vector).toDF(
"article_id", "articleVector")
brp = BucketedRandomProjectionLSH(inputCol="articleVector",
outputCol="hashes",
bucketLength=1.0,
seed=12345)
model = brp.fit(train)
similar = model.approxSimilarityJoin(test,
train,
2.0,
distCol="EuclideanDistance")
def save_hbase(partitions):
import happybase
pool = happybase.ConnectionPool(size=3, host='hadoop1')
with pool.connection() as conn:
article_similar = conn.table('article_similar')
for row in partitions:
if row.datasetA.article_id == row.datasetB.article_id:
pass
else:
article_similar.put(
str(row.datasetA.article_id).encode(), {
'similar:{}'.format(row.datasetB.article_id).encode(
):
b'%0.4f' % (row.EuclideanDistance)
})
similar.foreachPartition(save_hbase)
def compute_article_similar(self, articleProfile):
"""
计算增量文章与历史文章的相似度 word2vec
:return:
"""
# 得到要更新的新文章通道类别(不采用)
# all_channel = set(articleProfile.rdd.map(lambda x: x.channel_id).collect())
def avg(row):
x = 0
for v in row.vectors:
x += v
# 将平均向量作为article的向量
return row.article_id, row.channel_id, x / len(row.vectors)
for channel_id, channel_name in CHANNEL_INFO.items():
profile = articleProfile.filter(
'channel_id = {}'.format(channel_id))
wv_model = Word2VecModel.load(
"hdfs://hadoop-master:9000/headlines/models/channel_%d_%s.word2vec"
% (channel_id, channel_name))
vectors = wv_model.getVectors()
# 计算向量
profile.registerTempTable("incremental")
articleKeywordsWeights = self.spark.sql(
"select article_id, channel_id, keyword, weight from incremental LATERAL VIEW explode(keywords) AS keyword, weight where channel_id=%d"
% channel_id)
articleKeywordsWeightsAndVectors = articleKeywordsWeights.join(
vectors, vectors.word == articleKeywordsWeights.keyword,
"inner")
articleKeywordVectors = articleKeywordsWeightsAndVectors.rdd.map(
lambda r: (r.article_id, r.channel_id, r.keyword, r.weight * r.
vector)).toDF([
"article_id", "channel_id", "keyword",
"weightingVector"
])
articleKeywordVectors.registerTempTable("tempTable")
articleVector = self.spark.sql(
"select article_id, min(channel_id) channel_id, collect_set(weightingVector) vectors from tempTable group by article_id"
).rdd.map(avg).toDF(["article_id", "channel_id", "articleVector"])
# 写入数据库
def toArray(row):
return row.article_id, row.channel_id, [
float(i) for i in row.articleVector.toArray()
]
articleVector = articleVector.rdd.map(toArray).toDF(
['article_id', 'channel_id', 'articleVector'])
articleVector.write.insertInto("article_vector")
import gc
del wv_model
del vectors
del articleKeywordsWeights
del articleKeywordsWeightsAndVectors
del articleKeywordVectors
gc.collect()
# 得到历史数据, 转换成固定格式使用LSH进行求相似
train = self.spark.sql(
"select * from article_vector where channel_id=%d" %
channel_id)
def _array_to_vector(row):
return row.article_id, Vectors.dense(row.articleVector)
train = train.rdd.map(_array_to_vector).toDF(
['article_id', 'articleVector'])
test = articleVector.rdd.map(_array_to_vector).toDF(
['article_id', 'articleVector'])
brp = BucketedRandomProjectionLSH(inputCol='articleVector',
outputCol='hashes',
seed=12345,
bucketLength=1.0)
model = brp.fit(train)
similar = model.approxSimilarityJoin(test,
train,
2.0,
distCol='EuclideanDistance')
def save_hbase(partition):
import happybase
for row in partition:
pool = happybase.ConnectionPool(size=3,
host='hadoop-master')
# article_similar article_id similar:article_id sim
with pool.connection() as conn:
table = conn.table("article_similar")
for row in partition:
if row.datasetA.article_id == row.datasetB.article_id:
pass
else:
table.put(
str(row.datasetA.article_id).encode(), {
b"similar:%d" % row.datasetB.article_id:
b"%0.4f" % row.EuclideanDistance
})
conn.close()
similar.foreachPartition(save_hbase)
from pyspark.ml.feature import Word2VecModel, Tokenizer, StopWordsRemover
from pyspark.sql.functions import regexp_replace
import os
spark = SparkSession.builder \
.appName("Sentiment") \
.master("local[*]") \
.config("spark.driver.memory","4g")\
.config("spark.hadoop.yarn.resourcemanager.principal",os.getenv("HADOOP_USER_NAME"))\
.getOrCreate()
storage = os.getenv("STORAGE")
tokenizer = Tokenizer(inputCol="spoken_words", outputCol="word_list")
remover = StopWordsRemover(inputCol="word_list", outputCol="wo_stop_words")
w2v_model_fitted = Word2VecModel.load(
storage + "/datalake/data/sentiment/w2v_model_fitted")
lr_model = PipelineModel.load(storage + "/datalake/data/sentiment/lr_model")
#args = {"sentence":"I'm no dunce, I was born an oaf and I'll die an oaf"}
def predict_sentiment(args):
input_sentence = args["sentence"] #.split(",")
sentence_df = spark.createDataFrame([(input_sentence, )], ['spoken_words'])
sentence_df = sentence_df.select(
regexp_replace('spoken_words', r'[_\"\'():;,.!?\\-]',
' ').alias('spoken_words'))
sentence_df = tokenizer.transform(sentence_df)
sentence_df = remover.transform(sentence_df)
sentence_df = w2v_model_fitted.transform(sentence_df)
result = lr_model.transform(sentence_df).collect()[0]
# step1:convert item_id to sequence in session
train_data_seq = transform_trainable(train_data, test=False)
# step2:Training model and save model
word2Vec = Word2Vec(vectorSize=100,
seed=42,
minCount=2,
inputCol="reference_list",
outputCol="doc2vec_spark")
model = word2Vec.fit(train_data_seq)
model_path = '/team/cmp/hive_db/cmp_tmp/dl_model_template/recdata/rec_models'
model.write().overwrite().save(os.path.join(model_path, "item2vec.model"))
# step3:load model
model = Word2VecModel.load(os.path.join(model_path, "item2vec.model"))
# step4:Get the vector for each item and session
item2vec = model.getVectors()
train_data_seq = model.transform(train_data_seq)
# step5:Get the click sequence
train_data_click = train_data.filter("action_type='clickout item'").select(
'user_id', "session_id", 'timestamp', 'step', 'reference',
'impressions')
train_data_click = train_data_click.withColumn(
'impressions', F.split(train_data.impressions,
'\|')).withColumn("impressions",
F.explode("impressions"))
cond = train_data_click.impressions == item2vec.word
def shifted_3gram_word2vec_encode(self,
data=None,
inputCol=None,
outputCol=None,
windowSize=None,
vectorSize=None,
fileName=None,
sc=None):
'''Encodes a protein sequence as three non-overlapping 3-grams,
trains a Word2Vec model on the 3-grams, and then averages the
three resulting freature vectors.
Attribute
---------
data (DataFrame): input data to be encoded [None]
inputCol (str): name of the input column [None]
outputCol (str): name of the output column [None]
windowSize (int): width of the window used to slide across the sequence
context words from -window to window
vectorSize (int): dimension of the feature vector [None]
fileName (string): filename of Word2VecModel [None]
sc (SparkContext): spark context [None]
Returns
-------
dataset with features vector added to original dataset
References
----------
Asgari E, Mofrad MRK (2015) Continuous Distributed Representation
of Biological Sequences for Deep Proteomics and Genomics.
PLOS ONE 10(11): e0141287. doi:
https://doi.org/10.1371/journal.pone.0141287
'''
if data is not None:
self.data = data
if inputCol is not None:
self.inputCol = inputCol
if outputCol is not None:
self.outputCol = outputCol
if self.data is None:
raise ValueError("Class variable data is not defined, please pass\
in a dataframe into the data parameter")
# Create n-grams out of the sequence
# e.g., 2-gram [IDCGH, ...] => [ID. DC, CG, GH,...]
data = sequenceNgrammer.shifted_ngram(self.data, 3, 0, "ngram0")
data = sequenceNgrammer.shifted_ngram(data, 3, 1, "ngram1")
data = sequenceNgrammer.shifted_ngram(data, 3, 2, "ngram2")
if not (windowSize == None and vectorSize == None):
ngram0 = data.select("ngram0").withColumnRenamed("ngram0", "ngram")
ngram1 = data.select("ngram1").withColumnRenamed("ngram1", "ngram")
ngram2 = data.select("ngram2").withColumnRenamed("ngram2", "ngram")
ngrams = ngram0.union(ngram1).union(ngram2)
# Convert n-grams to W2V feature vector
# [I D, D C, C G, G H, ... ] => [0.1234, 0.2394, .. ]
word2Vec = Word2Vec()
word2Vec.setInputCol("ngram") \
.setOutputCol("feature") \
.setMinCount(10) \
.setNumPartitions(8) \
.setWindowSize(windowSize) \
.setVectorSize(vectorSize)
self.model = word2Vec.fit(ngrams)
elif fileName != None and sc != None:
reader = Word2VecModel()
self.model = reader.load(sc, fileName)
print(f"model file : {fileName} \n \
inputCol : {self.model.getInputCol()} \n \
windowSize : {self.model.getWindowSize()} \n \
vectorSize : {self.model.getVectorSize()}")
else:
raise Exception(
"Either provide word2Vec file (filename) + SparkContext (sc), \
or window size(windowSize) + vector size (vetorSize), \
for function parameters")
return
#data = data.withColumn("feature0",self.model.transform(data.select('ngram0').withColumnRenamed("ngram0","ngram")))
for i in reversed(range(3)):
feature = self.model.transform(
data.select('ngram' + str(i)).withColumnRenamed(
"ngram" + str(i), "ngram"))
data = data.join(
feature.withColumnRenamed("ngram", "ngram" + str(i)),
"ngram" + str(i))
data = data.withColumnRenamed("feature", "feature" + str(i))
data = self._average_feature_vectors(data, self.outputCol)
data.printSchema()
cols = ['structureChainId','sequence','labelQ8','labelQ3','ngram0','ngram1',\
'ngram2','feature0','feature1','feature2', 'features']
data = data.select(cols)
return data
"cleaned_tweets",
regexp_replace(col("tweets"), "http.+|@.|\n|RT|\d+", ' '))
# All words are lowercase and tokenized
tweets_df = RegexTokenizer(inputCol="cleaned_tweets",
outputCol="lowercase_tweets",
pattern="\\W").transform(tweets_df)
# We remove the StopWords
tweets_df = StopWordsRemover(
inputCol="lowercase_tweets",
outputCol="processed_tweets").transform(tweets_df)
# We drop the unused columns
tweets_df = tweets_df.drop("cleaned_tweets", "lowercase_tweets", "lang",
"date")
# We load the language model
model_path = "s3://" + bucket_name + "/models/w2v_model"
loaded_model = Word2VecModel.load(model_path)
# We add the output columns : it is the average of the words' vectors for each tweet
tweets_df = loaded_model.transform(tweets_df)
# We load the classifier
clf_path = "s3://" + bucket_name + "/models/mpc_model"
loaded_clf = MultilayerPerceptronClassificationModel.load(clf_path)
predictions = loaded_clf.transform(tweets_df)
# We keep the probability only for the predicted sentiment
to_array = udf(lambda v: v.toArray().tolist(), ArrayType(FloatType()))
predictions = predictions.withColumn("probability",
to_array("probability"))
predictions = predictions.withColumn("probability",
array_max("probability"))
