def featureExtractLr(self, trainDataframe, predictionDataframe):
pipeline = None
try:
# pipeline = PipelineModel.load(ROOT_PATH+'/logistic')
pipeline = Pipeline.load(ROOT_PATH + '/logistic')
except Exception:
print Exception.message
self.logger.error(Exception)
if pipeline is None:
# tokenizer = Tokenizer(inputCol="keywords", outputCol="words")
remover = StopWordsRemover(inputCol="keywords",
outputCol="filtered")
# 设置停用词
remover.setStopWords(self.cuttingMachine.chineseStopwords())
hashingTF = HashingTF(inputCol=remover.getOutputCol(),
outputCol="features")
lr = LogisticRegression(maxIter=10,
regParam=0.001).setElasticNetParam(0.8)
pipeline = Pipeline(stages=[remover, hashingTF, lr])
model = pipeline.fit(trainDataframe)
pipeline.write().overwrite().save(ROOT_PATH + '/logistic')
# model.write().overwrite().save(ROOT_PATH+'/logistic')
resultDataframe = model.transform(predictionDataframe)
resultDataframe.show()
selected = resultDataframe.select("id", "features", "probability",
"prediction")
for row in selected.collect():
rid, features, prob, prediction = row
self.logger.info("features: %s", features)
self.logger.info("prob: %s", str(prob))
self.logger.info("prediction: %s", str(prediction))
def testPipelineWithTargetEncoderIsSerializable():
targetEncoder = H2OTargetEncoder(
foldCol="ID",
labelCol="CAPSULE",
inputCols=["RACE", "DPROS", "DCAPS"],
outputCols=["RACE_out", "DPROS_out", "DCAPS_out"],
holdoutStrategy="KFold",
blendedAvgEnabled=True,
blendedAvgInflectionPoint=15.0,
blendedAvgSmoothing=25.0,
noise=0.05,
noiseSeed=123)
gbm = H2OGBM() \
.setLabelCol("CAPSULE") \
.setFeaturesCols(targetEncoder.getOutputCols())
pipeline = Pipeline(stages=[targetEncoder, gbm])
path = "file://" + os.path.abspath(
"build/testPipelineWithTargetEncoderIsSerializable")
pipeline.write().overwrite().save(path)
loadedPipeline = Pipeline.load(path)
[loadedTargetEncoder, loadedGbm] = loadedPipeline.getStages()
assertTargetEncoderAndMOJOModelParamsAreEqual(targetEncoder,
loadedTargetEncoder)
assert gbm.getLabelCol() == loadedGbm.getLabelCol()
assert gbm.getFeaturesCols() == loadedGbm.getFeaturesCols()
def testPipelineSerialization(craiglistDataset):
[traningDataset, testingDataset] = craiglistDataset.randomSplit([0.9, 0.1],
42)
tokenizer = RegexTokenizer(inputCol="jobtitle",
minTokenLength=2,
outputCol="tokenized")
stopWordsRemover = StopWordsRemover(inputCol=tokenizer.getOutputCol(),
outputCol="stopWordsRemoved")
w2v = H2OWord2Vec(sentSampleRate=0,
epochs=10,
inputCol=stopWordsRemover.getOutputCol(),
outputCol="w2v")
gbm = H2OGBM(labelCol="category", featuresCols=[w2v.getOutputCol()])
pipeline = Pipeline(stages=[tokenizer, stopWordsRemover, w2v, gbm])
pipeline.write().overwrite().save("file://" +
os.path.abspath("build/w2v_pipeline"))
loadedPipeline = Pipeline.load("file://" +
os.path.abspath("build/w2v_pipeline"))
model = loadedPipeline.fit(traningDataset)
expected = model.transform(testingDataset)
model.write().overwrite().save("file://" +
os.path.abspath("build/w2v_pipeline_model"))
loadedModel = PipelineModel.load(
"file://" + os.path.abspath("build/w2v_pipeline_model"))
result = loadedModel.transform(testingDataset)
unit_test_utils.assert_data_frames_are_identical(expected, result)
def runTest(self):
document_assembler = DocumentAssembler() \
.setInputCol("text") \
.setOutputCol("document")
tokenizer = RegexTokenizer() \
.setOutputCol("token")
lemmatizer = Lemmatizer() \
.setInputCols(["token"]) \
.setOutputCol("lemma") \
.setDictionary({"sad": "unsad"})
finisher = Finisher() \
.setInputCols(["token", "lemma"]) \
.setOutputCols(["token_views", "lemma_views"])
pipeline = Pipeline(
stages=[document_assembler, tokenizer, lemmatizer, finisher])
model = pipeline.fit(self.data)
token_before_save = model.transform(self.data).select(
"token_views").take(1)[0].token_views.split("@")[2]
lemma_before_save = model.transform(self.data).select(
"lemma_views").take(1)[0].lemma_views.split("@")[2]
pipe_path = "./tmp_pipeline"
pipeline.write().overwrite().save(pipe_path)
loaded_pipeline = Pipeline.read().load(pipe_path)
token_after_save = model.transform(self.data).select(
"token_views").take(1)[0].token_views.split("@")[2]
lemma_after_save = model.transform(self.data).select(
"lemma_views").take(1)[0].lemma_views.split("@")[2]
print(token_before_save)
assert token_before_save == "sad"
assert lemma_before_save == "unsad"
assert token_after_save == token_before_save
assert lemma_after_save == lemma_before_save
loaded_pipeline.fit(self.data).transform(self.data).show()
def featureExtract(self, trainDataframe, predictionDataframe):
pipeline = None
try:
pipeline = Pipeline.load(ROOT_PATH + '/pipeline')
except Exception:
print Exception.message
self.logger.error(Exception)
if pipeline is None:
# tokenizer = Tokenizer(inputCol="keywords", outputCol="words")
remover = StopWordsRemover(inputCol="keywords",
outputCol="filtered")
# 设置停用词
remover.setStopWords(self.cuttingMachine.chineseStopwords())
hashingTF = HashingTF(inputCol=remover.getOutputCol(),
outputCol="features")
idf = IDF(inputCol=hashingTF.getOutputCol(), outputCol="idff")
# lr = LogisticRegression(maxIter=10, regParam=0.001)
pipeline = Pipeline(stages=[remover, hashingTF, idf])
model = pipeline.fit(trainDataframe)
pipeline.write().overwrite().save(ROOT_PATH + '/pipeline')
resultDataframe = model.transform(predictionDataframe)
resultDataframe.show()
selected = resultDataframe.select("filtered", "features", "idff")
for row in selected.collect():
filtered, features, idff = row
self.logger.info("features: %s", features)
self.logger.info("idff: %s", idff)
self.logger.info(
"filtered: %s",
str(filtered).decode("unicode_escape").encode("utf-8"))
return selected
def test_grid_gbm_in_spark_pipeline(self):
prostate_frame = self._spark.read.csv(
"file://" +
unit_test_utils.locate("smalldata/prostate/prostate.csv"),
header=True,
inferSchema=True)
algo = H2OGridSearch(predictionCol="AGE",
hyperParameters={"_seed": [1, 2, 3]},
ratio=0.8,
algo=H2OGBM())
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save(
"file://" + os.path.abspath("build/grid_gbm_pipeline"))
loaded_pipeline = Pipeline.load(
"file://" + os.path.abspath("build/grid_gbm_pipeline"))
model = loaded_pipeline.fit(prostate_frame)
model.write().overwrite().save(
"file://" + os.path.abspath("build/grid_gbm_pipeline_model"))
loaded_model = PipelineModel.load(
"file://" + os.path.abspath("build/grid_gbm_pipeline_model"))
loaded_model.transform(prostate_frame).count()
def trainPipelineModel(idf, hashingTF, stopWordsRemover, tokenizer, algoStage,
data):
## Remove all helper columns
colPruner = ColumnPruner(columns=[
idf.getOutputCol(),
hashingTF.getOutputCol(),
stopWordsRemover.getOutputCol(),
tokenizer.getOutputCol()
])
## Create the pipeline by defining all the stages
pipeline = Pipeline(stages=[
tokenizer, stopWordsRemover, hashingTF, idf, algoStage, colPruner
])
## Test exporting and importing the pipeline. On Systems where HDFS & Hadoop is not available, this call store the pipeline
## to local file in the current directory. In case HDFS & Hadoop is available, this call stores the pipeline to HDFS home
## directory for the current user. Absolute paths can be used as wells. The same holds for the model import/export bellow.
pipelinePath = "file://" + os.path.abspath("../build/pipeline")
pipeline.write().overwrite().save(pipelinePath)
loaded_pipeline = Pipeline.load(pipelinePath)
## Train the pipeline model
modelPath = "file://" + os.path.abspath("../build/model")
model = loaded_pipeline.fit(data)
model.write().overwrite().save(modelPath)
return PipelineModel.load(modelPath)
def test_glm_in_spark_pipeline(self):
prostate_frame = self._spark.read.csv(
"file://" +
unit_test_utils.locate("smalldata/prostate/prostate.csv"),
header=True,
inferSchema=True)
algo = H2OGLM(featuresCols=[
"CAPSULE", "RACE", "DPROS", "DCAPS", "PSA", "VOL", "GLEASON"
],
labelCol="AGE",
seed=1,
ratio=0.8)
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save(
"file://" + os.path.abspath("build/glm_pipeline"))
loaded_pipeline = Pipeline.load("file://" +
os.path.abspath("build/glm_pipeline"))
model = loaded_pipeline.fit(prostate_frame)
model.write().overwrite().save(
"file://" + os.path.abspath("build/glm_pipeline_model"))
loaded_model = PipelineModel.load(
"file://" + os.path.abspath("build/glm_pipeline_model"))
loaded_model.transform(prostate_frame).count()
def test_grid_gbm_in_spark_pipeline(self):
prostate_frame = self._spark.read.csv(
"file://" +
unit_test_utils.locate("smalldata/prostate/prostate.csv"),
header=True,
inferSchema=True)
algo = H2OGridSearch(labelCol="AGE",
hyperParameters={"_seed": [1, 2, 3]},
ratio=0.8,
algo=H2OGBM(),
strategy="RandomDiscrete",
maxModels=3,
maxRuntimeSecs=60,
selectBestModelBy="RMSE")
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save(
"file://" + os.path.abspath("build/grid_gbm_pipeline"))
loaded_pipeline = Pipeline.load(
"file://" + os.path.abspath("build/grid_gbm_pipeline"))
model = loaded_pipeline.fit(prostate_frame)
model.write().overwrite().save(
"file://" + os.path.abspath("build/grid_gbm_pipeline_model"))
loaded_model = PipelineModel.load(
"file://" + os.path.abspath("build/grid_gbm_pipeline_model"))
loaded_model.transform(prostate_frame).count()
def test_mojo_dai_pipeline_serialize(self):
mojo = H2OMOJOPipelineModel.createFromMojo("file://" + os.path.abspath(
"../ml/src/test/resources/mojo2data/pipeline.mojo"))
prostateFrame = self._spark.read.csv(
"file://" +
unit_test_utils.locate("smalldata/prostate/prostate.csv"),
header=True)
# Create Spark pipeline of single step - mojo pipeline
pipeline = Pipeline(stages=[mojo])
pipeline.write().overwrite().save(
"file://" +
os.path.abspath("build/test_dai_pipeline_as_spark_pipeline"))
loadedPipeline = Pipeline.load(
"file://" +
os.path.abspath("build/test_dai_pipeline_as_spark_pipeline"))
# Train the pipeline model
model = loadedPipeline.fit(prostateFrame)
model.write().overwrite().save(
"file://" +
os.path.abspath("build/test_dai_pipeline_as_spark_pipeline_model"))
loadedModel = PipelineModel.load(
"file://" +
os.path.abspath("build/test_dai_pipeline_as_spark_pipeline_model"))
preds = loadedModel.transform(prostateFrame).repartition(1).select(
mojo.selectPredictionUDF("AGE")).take(5)
assert preds[0][0] == 65.36320409515132
assert preds[1][0] == 64.96902128114817
assert preds[2][0] == 64.96721023747583
assert preds[3][0] == 65.78772654671035
assert preds[4][0] == 66.11327967814829
def test_h2o_mojo_model_serialization_in_pipeline(self):
mojo = H2OMOJOModel.createFromMojo("file://" + os.path.abspath(
"../ml/src/test/resources/binom_model_prostate.mojo"))
prostate_frame = self._spark.read.csv(
"file://" +
unit_test_utils.locate("smalldata/prostate/prostate.csv"),
header=True)
pipeline = Pipeline(stages=[mojo])
pipeline.write().overwrite().save(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo"))
loaded_pipeline = Pipeline.load(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo"))
model = loaded_pipeline.fit(prostate_frame)
model.write().overwrite().save(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo_model"))
PipelineModel.load(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo_model"))
def process(spark, train_data, test_data):
df_train = spark.read.parquet(train_data)
df_test = spark.read.parquet(test_data)
features = VectorAssembler(inputCols=df_train.columns[1:-1],
outputCol='features')
evaluator = RegressionEvaluator(labelCol='ctr',
predictionCol='prediction',
metricName='rmse')
lr_model_base = LinearRegression(labelCol='ctr', **LR_PARAMS_BASE)
lr_model_to_tune = LinearRegression(labelCol='ctr')
lr_param_grid = ParamGridBuilder() \
.addGrid(lr_model_to_tune.maxIter, [5, 10, 20, 40, 50]) \
.addGrid(lr_model_to_tune.regParam, [0.4, 0.1, 0.01, 0.001]) \
.addGrid(lr_model_to_tune.fitIntercept, [False, True]) \
.addGrid(lr_model_to_tune.elasticNetParam, [0.0, 0.2, 0.4, 0.6, 0.8, 1.0]) \
.build()
tvs = TrainValidationSplit(estimator=lr_model_to_tune,
estimatorParamMaps=lr_param_grid,
evaluator=evaluator,
trainRatio=0.8)
pipeline_model_base = Pipeline(
stages=[features, lr_model_base]).fit(df_train)
prediction_base = pipeline_model_base.transform(df_test)
rmse_base = evaluator.evaluate(prediction_base)
print(f'Base lr model params: {LR_PARAMS_BASE}')
print(f'RMSE at base lr model = {rmse_base}')
print('Tuning lr model...')
pipeline_model_tuned = Pipeline(stages=[features, tvs]).fit(df_train)
prediction_tuned = pipeline_model_tuned.transform(df_test)
rmse_tuned = evaluator.evaluate(prediction_tuned)
model_java_obj = pipeline_model_tuned.stages[-1].bestModel._java_obj
lr_params_tuned = {
'maxIter': model_java_obj.getMaxIter(),
'regParam': model_java_obj.getRegParam(),
'elasticNetParam': model_java_obj.getElasticNetParam(),
'fitIntercept': model_java_obj.getFitIntercept()
}
print(f'Base lr model params: {lr_params_tuned}')
print(f'RMSE at tuned lr model = {rmse_tuned}')
if rmse_tuned < rmse_base:
pipeline_model_tuned.write().overwrite().save(MODEL_PATH)
print(f'Tuned model has better RMSE value')
else:
pipeline_model_base.write().overwrite().save(MODEL_PATH)
print(f'Base model has better RMSE value')
print(f'Model saved at "{MODEL_PATH}"')
spark.stop()
class KMeans:
def __init__(self, args, args2):
"""
Standalone version for initializing KMeans clustering
@param args: dict
K: int
init: string one of "k-means++" and "random"
n_init: int
max_iter: int
tol: float
"""
# init logging
self.logger = logging.getLogger(self.__class__.__name__)
# init parameters
self.outputUrl1 = args["output"][0]["value"]
self.param = args["param"]
self.model = None
self.logger.info("initializing SparkSession")
# init SparkSession
self.spark = utils.init_spark()
def getIn(self):
return
def execute(self):
from pyspark.ml.clustering import KMeans
from pyspark.ml import Pipeline
# 聚类中心个数
k = int(self.param["K"])
# 初始化方法
init = self.param["init"]
if init == "k-means":
init = "k-means||"
# 运行次数
n_init = int(self.param["n_init"])
# 单次训练最大迭代次数
max_iter = int(self.param["max_iter"])
# 容忍度
tol = int(self.param["tol"])
# 以Pipeline的模式初始化模型，方便统一接口加载模型
self.logger.info("initializing model")
self.model = Pipeline(stages=[
KMeans(k=k, initMode=init, initSteps=n_init, maxIter=max_iter, tol=tol)
])
def setOut(self):
self.logger.info("saving model to %s" % self.outputUrl1)
self.model.write().overwrite().save(self.outputUrl1)
class RandomForest:
def __init__(self, args, args2):
"""
Spark version for initializing RandomForest multi-class classifier
@param args: dict
n_estimators: int
criterion: string one of "gini" and "entropy"
max_depth: int
min_samples_split: int
min_samples_leaf: int
"""
self.logger = logging.getLogger(self.__class__.__name__)
self.outputUrl1 = args["output"][0]["value"]
self.param = args["param"]
self.model = None
self.dataUtil = utils.dataUtil(args2)
self.logger.info("initializing SparkSession")
self.spark = utils.init_spark()
def getIn(self):
return
def execute(self):
from pyspark.ml.classification import RandomForestClassifier
from pyspark.ml import Pipeline
# 树的个数
n_estimators = int(self.param["treeNum"])
# 评价标准
criterion = self.param["criterion"]
# 最大树深度
max_depth = int(self.param["maxDepth"])
# 最小分割样本数
min_samples_split = int(self.param["minSamplesSplit"])
# 叶子节点最小样本数
min_samples_leaf = int(self.param["minSamplesLeaf"])
# 以Pipeline的模式初始化模型，方便统一接口加载模型
self.logger.info("initializing model")
self.model = Pipeline(stages=[
RandomForestClassifier(numTrees=n_estimators,
impurity=criterion,
maxDepth=max_depth,
minInstancesPerNode=min_samples_leaf)
])
def setOut(self):
self.logger.info("Writing model to %s" % self.outputUrl1)
self.model.write().overwrite().save(self.outputUrl1)
def gridSearchTester(algo, prostateDataset):
grid = H2OGridSearch(labelCol="AGE", hyperParameters={"seed": [1, 2, 3]}, splitRatio=0.8, algo=algo,
strategy="RandomDiscrete", maxModels=3, maxRuntimeSecs=60, selectBestModelBy="RMSE")
pipeline = Pipeline(stages=[grid])
pipeline.write().overwrite().save("file://" + os.path.abspath("build/grid_pipeline"))
loadedPipeline = Pipeline.load("file://" + os.path.abspath("build/grid_pipeline"))
model = loadedPipeline.fit(prostateDataset)
model.write().overwrite().save("file://" + os.path.abspath("build/grid_pipeline_model"))
loadedModel = PipelineModel.load("file://" + os.path.abspath("build/grid_pipeline_model"))
loadedModel.transform(prostateDataset).count()
def testPipelineSerialization(prostateDataset):
algo = H2OIsolationForest(seed=1)
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save("file://" + os.path.abspath("build/isolation_forest_pipeline"))
loadedPipeline = Pipeline.load("file://" + os.path.abspath("build/isolation_forest_pipeline"))
model = loadedPipeline.fit(prostateDataset)
expected = model.transform(prostateDataset)
model.write().overwrite().save("file://" + os.path.abspath("build/isolation_forest_pipeline_model"))
loadedModel = PipelineModel.load("file://" + os.path.abspath("build/isolation_forest_pipeline_model"))
result = loadedModel.transform(prostateDataset)
unit_test_utils.assert_data_frames_are_identical(expected, result)
def testPipelineSerialization(prostateDataset):
algo = H2ODRF(featuresCols=["CAPSULE", "RACE", "DPROS", "DCAPS", "PSA", "VOL", "GLEASON"],
labelCol="AGE",
seed=1,
splitRatio=0.8)
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save("file://" + os.path.abspath("build/drf_pipeline"))
loadedPipeline = Pipeline.load("file://" + os.path.abspath("build/drf_pipeline"))
model = loadedPipeline.fit(prostateDataset)
model.write().overwrite().save("file://" + os.path.abspath("build/drf_pipeline_model"))
loadedModel = PipelineModel.load("file://" + os.path.abspath("build/drf_pipeline_model"))
loadedModel.transform(prostateDataset).count()
def create_random_pipeline():
print("Creating Data pipeline for regressor")
assembler = VectorAssembler(inputCols=[
"Year", "Engine HP", "Engine Cylinders", "Number of Doors",
"highway MPG", "city mpg", "Popularity"
],
outputCol="Attributes")
regressor = RandomForestRegressor(featuresCol="Attributes",
labelCol="MSRP")
pipeline = Pipeline(stages=[assembler, regressor])
pipelineStr = "pipeline"
pipeline.write().overwrite().save(pipelineStr) # Save pipeline
return (pipelineStr, regressor)
def train_model(dataFrame, k_value, w2v_value, seed=2137):
"""Train and save model"""
tokenizer = Tokenizer(inputCol="text", outputCol="words_raw")
remover = StopWordsRemover(inputCol="words_raw", outputCol="words")
word2Vec = Word2Vec(vectorSize=w2v_value,
seed=seed,
inputCol="words",
outputCol="features_unnormalized")
scaler = StandardScaler(inputCol="features_unnormalized",
outputCol="features",
withStd=True,
withMean=True)
kmeans = KMeans(k=k_value, seed=seed)
pipeline = Pipeline(stages=[tokenizer, remover, word2Vec, scaler, kmeans])
pipeline = pipeline.fit(dataFrame)
pipeline.write().overwrite().save("hdfs:///models/model")
return pipeline
def main(argv):
spark = SparkSession.builder \
.master("local[*]") \
.config("spark.driver.memory", "4g") \
.config("spark.executor.memory", "1g") \
.getOrCreate()
features_df = ParquetDataFrame(
f'data/processed/{Phase.train.name}/features', spark)
test_data_frac = 0.1
test_features_df, train_features_df = features_df.randomSplit(
[test_data_frac, 1 - test_data_frac])
label_col = 'duration_min'
model = Pipeline(stages=[
StringIndexer(inputCol='pickup_cell_6',
handleInvalid='keep',
outputCol='pickup_cell_6_idx'),
StringIndexer(inputCol='dropoff_cell_6',
handleInvalid='keep',
outputCol='dropoff_cell_6_idx'),
VectorAssembler(inputCols=[
'pickup_cell_6_idx', 'dropoff_cell_6_idx', 'distance', 'month',
'day_of_month', 'day_of_week', 'hour', 'requests_pickup_cell',
'requests_dropoff_cell'
],
outputCol="features"),
DecisionTreeRegressor(
maxDepth=7, featuresCol='features', labelCol=label_col)
]).fit(train_features_df)
model_path = 'model/trip_duration_min'
print(f'Saving model to {model_path}')
model.write().overwrite().save(model_path)
print(f'Model saved...')
model = PipelineModel.load(model_path)
predictions_df = model.transform(test_features_df)
mae_cv = RegressionEvaluator(labelCol=label_col,
metricName='mae').evaluate(predictions_df)
print(f'Mean absolutre error: {mae_cv}')
spark.stop()
def testPipelineSerialization(dataset):
algo = H2OKMeans(
splitRatio=0.8,
seed=1,
k=3,
featuresCols=["sepal_len", "sepal_wid", "petal_len", "petal_wid"])
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save("file://" +
os.path.abspath("build/kmeans_pipeline"))
loadedPipeline = Pipeline.load("file://" +
os.path.abspath("build/kmeans_pipeline"))
model = loadedPipeline.fit(dataset)
model.write().overwrite().save(
"file://" + os.path.abspath("build/kmeans_pipeline_model"))
loadedModel = PipelineModel.load(
"file://" + os.path.abspath("build/kmeans_pipeline_model"))
loadedModel.transform(dataset).count()
def testMojoModelSerializationInPipeline(prostateDataset):
mojo = H2OMOJOModel.createFromMojo(
"file://" +
os.path.abspath("../ml/src/test/resources/binom_model_prostate.mojo"))
pipeline = Pipeline(stages=[mojo])
pipeline.write().overwrite().save(
"file://" + os.path.abspath("build/test_spark_pipeline_model_mojo"))
loadedPipeline = Pipeline.load(
"file://" + os.path.abspath("build/test_spark_pipeline_model_mojo"))
model = loadedPipeline.fit(prostateDataset)
model.write().overwrite().save(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo_model"))
PipelineModel.load(
"file://" +
os.path.abspath("build/test_spark_pipeline_model_mojo_model"))
def testPipelineSerialization(heartDataset):
features = ['age', 'year', 'surgery', 'transplant', 'start', 'stop']
algo = H2OCoxPH(labelCol="event",
featuresCols=features,
startCol='start',
stopCol='stop')
pipeline = Pipeline(stages=[algo])
pipeline.write().overwrite().save("file://" +
os.path.abspath("build/cox_ph_pipeline"))
loadedPipeline = Pipeline.load("file://" +
os.path.abspath("build/cox_ph_pipeline"))
model = loadedPipeline.fit(heartDataset)
expected = model.transform(heartDataset)
model.write().overwrite().save("file://" +
os.path.abspath("build/cox_ph_pipeline"))
loadedModel = PipelineModel.load("file://" +
os.path.abspath("build/cox_ph_pipeline"))
result = loadedModel.transform(heartDataset)
unit_test_utils.assert_data_frames_are_identical(expected, result)
mlSourceDF.printSchema()
mlSourceDF=mlSourceDF.fillna(0, subset= [x for x in mlSourceDF.columns if 'Lag' in x])
# after creating all lag features, we can drop NA columns on the key columns
# drop na to avoid error in StringIndex
mlSourceDF = mlSourceDF.na.drop(subset=["ServerIP","SessionStartHourTime"])
# indexing
columnsForIndex = ['dayofweek', 'ServerIP', 'year', 'month', 'weekofyear', 'dayofmonth', 'hourofday',
'Holiday', 'BusinessHour', 'Morning']
mlSourceDF=mlSourceDF.fillna(0, subset= [x for x in columnsForIndex ])
sIndexers = [StringIndexer(inputCol=x, outputCol=x + '_indexed').setHandleInvalid("skip") for x in columnsForIndex]
indexModel = Pipeline(stages=sIndexers).fit(mlSourceDF)
mlSourceDF = indexModel.transform(mlSourceDF)
# save model for operationalization
indexModel.write().overwrite().save(stringIndexModelFile)
# encoding for categorical features
catVarNames=[x + '_indexed' for x in columnsForIndex ]
columnOnlyIndexed = [ catVarNames[i] for i in range(0,len(catVarNames)) if len(indexModel.stages[i].labels)<2 ]
columnForEncode = [ catVarNames[i] for i in range(0,len(catVarNames)) if len(indexModel.stages[i].labels)>=2 ]
info['columnOnlyIndexed'] = columnOnlyIndexed
info['columnForEncode'] = columnForEncode
# save info to blob storage
write_blob(info, infoFile, storageContainer, storageAccount, storageKey)
ohEncoders = [OneHotEncoder(inputCol=x, outputCol=x + '_encoded')
for x in columnForEncode ]
# Print out the predicted Play Type, Actual Play Type, and the vector of indexed features
predictions.select("predictedLabel", "play_type", "indexedFeatures").show(5)
# Determine the accuracy of the model
# Can specify other evaluation metrics
evaluator = MulticlassClassificationEvaluator(labelCol="indexedLabel", predictionCol = "prediction", metricName="accuracy")
# Calculate the test error
accuracy = evaluator.evaluate(predictions)
print("Test Error = %g" % (1.0 - accuracy))
rfModel = model.stages[2]
print(rfModel)
# COMMAND ----------
predictions.select("indexedLabel","prediction","predictedLabel").show(5)
# COMMAND ----------
rfPipeline.write().overwrite().save("nfl-data/pipelines")
# COMMAND ----------
rfModel.write().overwrite().save("/nfl-data/models")
# COMMAND ----------
# MAGIC %fs
# MAGIC ls /nfl-data/pipelines/stages
## Remove all helper columns
colPruner = ColumnPruner(columns=[
idf.getOutputCol(),
hashingTF.getOutputCol(),
stopWordsRemover.getOutputCol(),
tokenizer.getOutputCol()
])
## Create the pipeline by defining all the stages
pipeline = Pipeline(
stages=[tokenizer, stopWordsRemover, hashingTF, idf, algoStage, colPruner])
## Test exporting and importing the pipeline. On Systems where HDFS & Hadoop is not available, this call store the pipeline
## to local file in the current directory. In case HDFS & Hadoop is available, this call stores the pipeline to HDFS home
## directory for the current user. Absolute paths can be used as wells. The same holds for the model import/export bellow.
pipeline.write().overwrite().save("examples/build/pipeline")
loaded_pipeline = Pipeline.load("examples/build/pipeline")
## Train the pipeline model
data = load()
model = loaded_pipeline.fit(data)
model.write().overwrite().save("examples/build/model")
loaded_model = PipelineModel.load("examples/build/model")
##
## Make predictions on unlabeled data
## Spam detector
##
def isSpam(smsText, model, hamThreshold=0.5):
pipeline = Pipeline(stages=[stringIndexer, vecAssembler])
# COMMAND ----------
# MAGIC %md
# MAGIC ## Scala
# MAGIC
# MAGIC Distributed XGBoost with Spark only has a Scala API, so we are going to create views of our DataFrames to use in Scala, as well as save our (untrained) pipeline to load in to Scala.
# COMMAND ----------
trainDF.createOrReplaceTempView("trainDF")
testDF.createOrReplaceTempView("testDF")
fileName = "/tmp/xgboost_feature_pipeline"
pipeline.write().overwrite().save(fileName)
# COMMAND ----------
# MAGIC %md
# MAGIC ## Load Data/Pipeline in Scala
# MAGIC
# MAGIC This section is only available in Scala because there is no distributed Python API for XGBoost in Spark yet.
# MAGIC
# MAGIC Let's load in our data/pipeline that we defined in Python.
# COMMAND ----------
# MAGIC %scala
# MAGIC import org.apache.spark.ml.Pipeline
# MAGIC
from pyspark.ml import Pipeline
from pyspark.sql import SparkSession
from pyspark.ml.feature import Binarizer
if __name__ == "__main__":
spark = SparkSession\
.builder\
.appName("BinarizerExample")\
.getOrCreate()
continuousDataFrame = spark.createDataFrame([(4)], [ "feature"])
binarizer = Binarizer(threshold=5, inputCol="feature", outputCol="binarized_feature")
pipeline = Pipeline(stages=[binarizer])
pipeline = pipeline.fit(continuousDataFrame)
pipeline.write().overwrite().save("binarizer")
test_model.take(1)
# In[13]:
import pyspark.ml.evaluation as ev
evaluator = ev.BinaryClassificationEvaluator(rawPredictionCol='probability',
labelCol='INFANT_ALIVE_AT_REPORT')
print(evaluator.evaluate(test_model, {evaluator.metricName: 'areaUnderROC'}))
print(evaluator.evaluate(test_model, {evaluator.metricName: 'areaUnderPR'}))
# In[14]:
pipelinePath = './model/infant_oneHotEncoder_Logistic_Pipeline'
pipeline.write().overwrite().save(pipelinePath)
# In[15]:
loadedPipeline = Pipeline.load(pipelinePath)
loadedPipeline.fit(births_train).transform(births_test).take(1)
# In[16]:
from pyspark.ml import PipelineModel
modelPath = './model/infant_oneHotEncoder_Logistic_PipelineModel'
model.write().overwrite().save(modelPath)
loadedPipelineModel = PipelineModel.load(modelPath)
test_loadedModel = loadedPipelineModel.transform(births_test)
predictionCol="label")
elif algo == "xgboost":
## Create H2OXGBoost model
algoStage = H2OXGBoost(convertUnknownCategoricalLevelsToNa=True,
featuresCols=[idf.getOutputCol()],
predictionCol="label")
## Remove all helper columns
colPruner = ColumnPruner(columns=[idf.getOutputCol(), hashingTF.getOutputCol(), stopWordsRemover.getOutputCol(), tokenizer.getOutputCol()])
## Create the pipeline by defining all the stages
pipeline = Pipeline(stages=[tokenizer, stopWordsRemover, hashingTF, idf, algoStage, colPruner])
## Test exporting and importing the pipeline. On Systems where HDFS & Hadoop is not available, this call store the pipeline
## to local file in the current directory. In case HDFS & Hadoop is available, this call stores the pipeline to HDFS home
## directory for the current user. Absolute paths can be used as wells. The same holds for the model import/export bellow.
pipeline.write().overwrite().save("examples/build/pipeline")
loaded_pipeline = Pipeline.load("examples/build/pipeline")
## Train the pipeline model
data = load()
model = loaded_pipeline.fit(data)
model.write().overwrite().save("examples/build/model")
loaded_model = PipelineModel.load("examples/build/model")
##
## Make predictions on unlabeled data
## Spam detector
assembler = VectorAssembler(inputCols=selected, outputCol="features")
# especificar el modelo:
from pyspark.ml.classification import DecisionTreeClassifier
classifier = DecisionTreeClassifier(featuresCol="features",
labelCol="five_star_rating")
# especificar el pipeline:
from pyspark.ml import Pipeline
stages = [filterer, converter, binarizer, extractor, assembler, classifier]
pipeline = Pipeline(stages=stages)
# ## Save and load the machine learning pipeline
# guardar la instancia del `Pipeline` HDFS:
pipeline.write().overwrite().save("models/pipeline")
# si no queremos sobreescribirlo:
#```python
#pipeline.save("models/pipeline")
#```
# leer el pipeline desde el hdfs :
pipeline_loaded = Pipeline.read().load("models/pipeline")
# se puede usar esto otro método:
#```python
#pipeline_loaded = Pipeline.load("models/pipeline")
#```
# ## entrenar el modelo
