def test_hicann_configurator(self):
marocco = PyMarocco()
with self.assertRaises(TypeError):
marocco.hicann_configurator
import pysthal
marocco.hicann_configurator = pysthal.HICANNConfigurator()
self.assertTrue(
isinstance(marocco.hicann_configurator,
pysthal.HICANNConfigurator))
def run_experiment(self, time, cfg=None):
if self.RUN:
self.connect()
if cfg is None:
cfg = pysthal.HICANNConfigurator()
self.w.configure(cfg)
if time > 0.0:
runner = pysthal.ExperimentRunner(time)
self.w.start(runner)
def ESS_available():
try:
import pymarocco
marocco = pymarocco.PyMarocco()
marocco.backend = pymarocco.PyMarocco.ESS
marocco.continue_despite_synapse_loss = True
marocco.calib_backend = pymarocco.PyMarocco.CalibBackend.Default
marocco.defects.backend = pymarocco.Defects.Backend.Without
marocco.hicann_configurator = pysthal.HICANNConfigurator()
pynn.setup(marocco=marocco)
pynn.run(1.)
return True
except RuntimeError as err:
if str(err) == "ESS not available (compile with ESS)":
return False
else:
raise err
def runTest(self):
pylogging.reset()
pylogging.default_config(pylogging.LogLevel.INFO)
marocco = pymarocco.PyMarocco()
marocco.neuron_placement.default_neuron_size(8)
marocco.calib_backend = pymarocco.PyMarocco.CalibBackend.Default
marocco.defects.backend = pymarocco.Defects.Backend.Without
marocco.hicann_configurator = pysthal.HICANNConfigurator()
marocco.continue_despite_synapse_loss = True
marocco.backend = pymarocco.PyMarocco.ESS
marocco.experiment_time_offset = 5e-7
n_exc = 100 # Number of excitatory neurons per group
sim_duration = 200.
pp_start = 50. # start = center of pulse-packet
weight_exc = 0.002 # uS weight for excitatory to excitatory connections
# (double than in reference paper)
pynn.setup(
max_delay=20.,
marocco=marocco,
)
# v_thresh close to v_rest to make sure there are some spikes
neuron_params = {
'v_rest': -65.,
'v_thresh': -62.5,
}
exc_pop = pynn.Population(n_exc, pynn.IF_cond_exp, neuron_params)
exc_pop.record()
pop_stim = pynn.Population(n_exc, pynn.SpikeSourceArray,
{'spike_times': [pp_start]})
conn = pynn.FixedNumberPreConnector(60, weights=weight_exc, delays=20.)
pynn.Projection(pop_stim, exc_pop, conn, target='excitatory')
pynn.run(sim_duration)
pynn.end()
from pymarocco import PyMarocco, Defects
import pylogging
import pysthal
# configure logging
pylogging.reset()
pylogging.default_config(level=pylogging.LogLevel.INFO,
fname="logfile.txt",
dual=False)
# Mapping config
marocco = PyMarocco()
marocco.backend = PyMarocco.ESS # choose Executable System Specification instead of real hardware
marocco.calib_backend = PyMarocco.CalibBackend.Default
marocco.defects.backend = Defects.Backend.None
marocco.hicann_configurator = pysthal.HICANNConfigurator()
marocco.experiment_time_offset = 5.e-7 # can be low for ESS, as no repeater locking required
marocco.neuron_placement.default_neuron_size(
4) # default number of hardware neuron circuits per pyNN neuron
marocco.persist = "nmpm1_adex_neuron_ess.bin"
marocco.param_trafo.use_big_capacitors = False
# set-up the simulator
pynn.setup(marocco=marocco)
neuron_count = 1 # size of the Population we will create
# Set the neuron model class
neuron_model = pynn.EIF_cond_exp_isfa_ista # an Adaptive Exponential I&F Neuron
neuron_parameters = {
def setUp(self, backend=PyMarocco.ESS):
self.marocco = PyMarocco()
self.marocco.backend = backend
self.marocco.calib_backend = PyMarocco.CalibBackend.Default
self.marocco.defects.backend = Defects.Backend.Without
self.marocco.hicann_configurator = pysthal.HICANNConfigurator()
self.config_dncmerger(h, hicann)
self.config_background_generators(h, hicann)
self.flush_hicann(h)
self.lock_repeater(h, hicann)
self.config_neuron_config(h, hicann)
self.config_neuron_quads(h, hicann)
self.config_analog_readout(h, hicann)
self.flush_hicann(h)
#class FooConfigurator(pysthal.HICANNConfigurator):
# def config(self, fpga, handle, data):
# pyhalbe.HICANN.init(handle, False)
# self.config_synapse_drivers(handle, data);
wafer.configure(pysthal.HICANNConfigurator())
#wafer.configure(NoneConfigurator())
#wafer.configure(FooConfigurator())
# Run experiment:
runner = pysthal.ExperimentRunner(duration)
# Setup ADC
recorder0 = hicann.analogRecorder(Coordinate.AnalogOnHICANN(0))
recorder0.activateTrigger(duration)
wafer.start(runner)
outdir_str = "in_addr_"+str(in_addr_int) + "_" + args.vertical
try:
def test_cell_ids(self):
"""
tests that [Population,PopulationView,Assembly].getSpikes() uses the
expected cell ids, cf. issue #1955
"""
import pymarocco
marocco = pymarocco.PyMarocco()
marocco.backend = pymarocco.PyMarocco.ESS
marocco.experiment_time_offset = 5.e-7
marocco.continue_despite_synapse_loss = True
marocco.calib_backend = pymarocco.PyMarocco.CalibBackend.Default
marocco.defects.backend = pymarocco.Defects.Backend.Without
marocco.hicann_configurator = pysthal.HICANNConfigurator()
setup_params = dict()
if pynn.__name__ == "pyhmf":
setup_params['marocco'] = marocco
pynn.setup(**setup_params)
# dummy target population
p_dummy = pynn.Population(10, pynn.IF_cond_exp)
# 1st Input Population
p1 = pynn.Population(10, pynn.SpikeSourceArray)
input_spikes1 = np.arange(1, 11., 1.).reshape(10, 1)
for n, spikes in enumerate(input_spikes1):
p1[n:n + 1].set('spike_times', spikes.tolist())
# 2nd Input Population
p2 = pynn.Population(10, pynn.SpikeSourceArray)
input_spikes2 = np.arange(11., 21., 1.).reshape(10, 1)
for n, spikes in enumerate(input_spikes2):
p2[n:n + 1].set('spike_times', spikes.tolist())
p1.record()
p2.record()
# dummy connections otherwise input populations are not mapped.
pynn.Projection(p1, p_dummy, pynn.OneToOneConnector())
pynn.Projection(p2, p_dummy, pynn.OneToOneConnector())
pynn.run(25.)
# check that cell ids refer to the index in the Population.
s_p1 = p1.getSpikes()
s_p1 = s_p1[np.argsort(s_p1[:, 1])] # sort by time
self.assertTrue(np.array_equal(list(range(10)), s_p1[:, 0]))
s_p2 = p2.getSpikes()
s_p2 = s_p2[np.argsort(s_p2[:, 1])] # sort by time
self.assertTrue(np.array_equal(list(range(10)), s_p2[:, 0]))
# for PopulationViews we also expect the index in the parent Population
self.assertEqual(set(p2[0:1].getSpikes()[:, 0]), set(range(1)))
self.assertEqual(set(p2[1:3].getSpikes()[:, 0]), set(range(1, 3)))
# In Assemblies, the cell id is equal to an offset given by the sum of
# the Population sizes of the previous items (Population or
# PopulationView), plus the index within in the Population.
a = pynn.Assembly(p2[0:5], p1)
s_a = a.getSpikes()
# when sorted, ids should be: range(10,20) + range(5)
s_a = s_a[np.argsort(s_a[:, 1])] # sort by time
self.assertTrue(
np.array_equal(list(range(10, 20)) + list(range(5)), s_a[:, 0]))