def align_spectrum(self):
align_sp = self.session.selected_spectrum()
if align_sp:
self.align_menu.set(align_sp.name)
align_peaks = align_sp.selected_peaks()
ref_peaks = pyutil.subtract_lists(self.session.selected_peaks(),
align_peaks)
if len(ref_peaks) == 1:
ref_peak = ref_peaks[0]
ref_sp = ref_peak.spectrum
self.ref_menu.set(ref_sp.name)
self.show_window(1)
def resonance_linewidth_and_position(spectrum, peak, axis, not_these_peaks):
freq = peak.frequency[axis]
linewidth = 0
r = peak.resonances()[axis]
if r:
freq = r.frequency
opeaks = assigned_peaks(spectrum, r, axis)
opeaks = pyutil.subtract_lists(opeaks, not_these_peaks)
if opeaks:
freq = average_frequency(opeaks, axis)
linewidth = average_linewidth(opeaks, axis)
if linewidth == 0:
out = spectrum.session.stdout
out.write('No w%d axis %s %s linewidth\n'
% (axis+1, spectrum.name, r.name))
else:
out = spectrum.session.stdout
out.write('No w%d axis %s %s peaks\n'
% (axis+1, spectrum.name, r.name))
return freq, linewidth
def unassigned_resonances(self):
assignable = self.assignment_system.assignable_resonances
assigned = self.assigned_resonances()
return pyutil.subtract_lists(assignable, assigned)
def unassigned_expected_peaks(self):
assigned = map(lambda ed: ed[0], self.peak_assignments)
all = self.expected_peaks
unassigned = pyutil.subtract_lists(all, assigned)
return unassigned
def unassigned_resonances(self):
assignable = self.assignment_system.assignable_resonances
assigned = self.assigned_resonances()
return pyutil.subtract_lists(assignable, assigned)
def unassigned_expected_peaks(self):
assigned = map(lambda ed: ed[0], self.peak_assignments)
all = self.expected_peaks
unassigned = pyutil.subtract_lists(all, assigned)
return unassigned
