def __createSet(self, SetClass, template, suffix, **kwargs):
""" Create a set and set the filename using the suffix.
If the file exists, it will be delete. """
setFn = self._getPath(template % suffix)
# Close the connection to the database if
# it is open before deleting the file
cleanPath(setFn)
SqliteDb.closeConnection(setFn)
setObj = SetClass(filename=setFn, **kwargs)
return setObj
def __createSet(self, SetClass, template, suffix):
""" Create a set and set the filename using the suffix.
If the file exists, it will be delete. """
setFn = self._getPath(template % suffix)
# Close the connection to the database if
# it is open before deleting the file
cleanPath(setFn)
SqliteDb.closeConnection(setFn)
setObj = SetClass(filename=setFn)
return setObj
def test_SqliteDb(self):
""" Test the SqliteDb class that is used by the sqlite mappers. """
db = SqliteDb()
db._createConnection(self.modelGoldSqlite, timeout=1000)
tables = ['Objects', 'Relations']
self.assertEqual(tables, db.getTables())
# Test getting the version, for the gold file it should be 0
self.assertEqual(0, db.getVersion())
db.close()
def test_SqliteDb(self):
""" Test the SqliteDb class that is used by the sqlite mappers. """
db = SqliteDb()
db._createConnection(self.modelGoldSqlite, timeout=1000)
tables = ['Objects', 'Relations']
self.assertEqual(tables, db.getTables())
# Test getting the version, for the gold file it should be 0
self.assertEqual(0, db.getVersion())
db.close()
def test_SqliteDb(self):
""" Test the SqliteDb class that is used by the sqlite mappers. """
from pyworkflow.mapper.sqlite_db import SqliteDb
db = SqliteDb()
db._createConnection(self.modelGoldSqlite, timeout=1000)
tables = ["Objects", "Relations"]
self.assertEqual(tables, db.getTables())
db.close()
def test_SqliteMapper(self):
fn = self.getOutputPath("basic.sqlite")
fnGoldCopy = self.getOutputPath('gold.sqlite')
fnGold = self.modelGoldSqlite
print ">>> Using db: ", fn
print " gold: ", fnGold
print " gold copy: ", fnGoldCopy
pwutils.copyFile(fnGold, fnGoldCopy)
mapper = SqliteMapper(fn)
# Insert a Complex
c = Complex.createComplex() # real = 1, imag = 1
mapper.insert(c)
# Insert an Integer
i = Integer(1)
mapper.insert(i)
# Insert two Boolean
b = Boolean(False)
b2 = Boolean(True)
mapper.insert(b)
mapper.insert(b2)
#Test storing pointers
p = Pointer()
p.set(c)
mapper.insert(p)
# Store csv list
strList = ['1', '2', '3']
csv = CsvList()
csv += strList
mapper.insert(csv)
# Test normal List
iList = List()
mapper.insert(iList) # Insert the list when empty
i1 = Integer(4)
i2 = Integer(3)
iList.append(i1)
iList.append(i2)
mapper.update(iList) # now update with some items inside
pList = PointerList()
p1 = Pointer()
p1.set(b)
p2 = Pointer()
p2.set(b2)
pList.append(p1)
pList.append(p2)
mapper.store(pList)
# Test to add relations
relName = 'testRelation'
creator = c
mapper.insertRelation(relName, creator, i, b)
mapper.insertRelation(relName, creator, i, b2)
mapper.insertRelation(relName, creator, b, p)
mapper.insertRelation(relName, creator, b2, p)
# Save changes to file
mapper.commit()
self.assertEqual(1, mapper.db.getVersion())
# Intentionally keep gold.sqlite as version 0 to check
# backward compatibility
db = SqliteDb()
db._createConnection(fnGold, timeout=1000)
print "Checking old version is properly read"
self.assertEqual(0, db.getVersion())
colNamesGold = [u'id', u'parent_id', u'name', u'classname',
u'value', u'label', u'comment', u'object_parent_id',
u'object_child_id', u'creation']
colNames = [col[1] for col in db.getTableColumns('Relations')]
self.assertEqual(colNamesGold, colNames)
# Reading test
mapper2 = SqliteMapper(fnGoldCopy, globals())
print "Checking that Relations table is updated and version to 1"
self.assertEqual(1, mapper2.db.getVersion())
# Check that the new column is properly added after updated to version 1
colNamesGold += [u'object_parent_extended', u'object_child_extended']
colNames = [col[1] for col in mapper2.db.getTableColumns('Relations')]
self.assertEqual(colNamesGold, colNames)
l = mapper2.selectByClass('Integer')[0]
self.assertEqual(l.get(), 1)
c2 = mapper2.selectByClass('Complex')[0]
self.assertTrue(c.equalAttributes(c2))
b = mapper2.selectByClass('Boolean')[0]
self.assertTrue(not b.get())
p = mapper2.selectByClass('Pointer')[0]
self.assertEqual(c, p.get())
csv2 = mapper2.selectByClass('CsvList')[0]
self.assertTrue(list.__eq__(csv2, strList))
# Iterate over all objects
allObj = mapper2.selectAll()
iterAllObj = mapper2.selectAll(iterate=True)
for a1, a2 in zip(allObj, iterAllObj):
# Note compare the scalar objects, which have a well-defined comparison
if isinstance(a1, Scalar):
self.assertEqual(a1, a2)
# Test relations
childs = mapper2.getRelationChilds(relName, i)
parents = mapper2.getRelationParents(relName, p)
# In this case both childs and parent should be the same
for c, p in zip(childs, parents):
self.assertEqual(c, p, "Childs of object i, should be the parents of object p")
relations = mapper2.getRelationsByCreator(creator)
for row in relations:
print row
def test_SqliteMapper(self):
fn = self.getOutputPath("basic.sqlite")
fnGoldCopy = self.getOutputPath('gold.sqlite')
fnGold = self.modelGoldSqlite
print ">>> Using db: ", fn
print " gold: ", fnGold
print " gold copy: ", fnGoldCopy
pwutils.copyFile(fnGold, fnGoldCopy)
mapper = SqliteMapper(fn)
# Insert a Complex
c = Complex.createComplex() # real = 1, imag = 1
mapper.insert(c)
# Insert an Integer
i = Integer(1)
mapper.insert(i)
# Insert two Boolean
b = Boolean(False)
b2 = Boolean(True)
mapper.insert(b)
mapper.insert(b2)
#Test storing pointers
p = Pointer()
p.set(c)
mapper.insert(p)
# Store csv list
strList = ['1', '2', '3']
csv = CsvList()
csv += strList
mapper.insert(csv)
# Test normal List
iList = List()
mapper.insert(iList) # Insert the list when empty
i1 = Integer(4)
i2 = Integer(3)
iList.append(i1)
iList.append(i2)
mapper.update(iList) # now update with some items inside
pList = PointerList()
p1 = Pointer()
p1.set(b)
p2 = Pointer()
p2.set(b2)
pList.append(p1)
pList.append(p2)
mapper.store(pList)
# Test to add relations
relName = 'testRelation'
creator = c
mapper.insertRelation(relName, creator, i, b)
mapper.insertRelation(relName, creator, i, b2)
mapper.insertRelation(relName, creator, b, p)
mapper.insertRelation(relName, creator, b2, p)
# Save changes to file
mapper.commit()
self.assertEqual(1, mapper.db.getVersion())
# Intentionally keep gold.sqlite as version 0 to check
# backward compatibility
db = SqliteDb()
db._createConnection(fnGold, timeout=1000)
print "Checking old version is properly read"
self.assertEqual(0, db.getVersion())
colNamesGold = [
u'id', u'parent_id', u'name', u'classname', u'value', u'label',
u'comment', u'object_parent_id', u'object_child_id', u'creation'
]
colNames = [col[1] for col in db.getTableColumns('Relations')]
self.assertEqual(colNamesGold, colNames)
# Reading test
mapper2 = SqliteMapper(fnGoldCopy, globals())
print "Checking that Relations table is updated and version to 1"
self.assertEqual(1, mapper2.db.getVersion())
# Check that the new column is properly added after updated to version 1
colNamesGold += [u'object_parent_extended', u'object_child_extended']
colNames = [col[1] for col in mapper2.db.getTableColumns('Relations')]
self.assertEqual(colNamesGold, colNames)
l = mapper2.selectByClass('Integer')[0]
self.assertEqual(l.get(), 1)
c2 = mapper2.selectByClass('Complex')[0]
self.assertTrue(c.equalAttributes(c2))
b = mapper2.selectByClass('Boolean')[0]
self.assertTrue(not b.get())
p = mapper2.selectByClass('Pointer')[0]
self.assertEqual(c, p.get())
csv2 = mapper2.selectByClass('CsvList')[0]
self.assertTrue(list.__eq__(csv2, strList))
# Iterate over all objects
allObj = mapper2.selectAll()
iterAllObj = mapper2.selectAll(iterate=True)
for a1, a2 in zip(allObj, iterAllObj):
# Note compare the scalar objects, which have a well-defined comparison
if isinstance(a1, Scalar):
self.assertEqual(a1, a2)
# Test relations
childs = mapper2.getRelationChilds(relName, i)
parents = mapper2.getRelationParents(relName, p)
# In this case both childs and parent should be the same
for c, p in zip(childs, parents):
self.assertEqual(
c, p, "Childs of object i, should be the parents of object p")
relations = mapper2.getRelationsByCreator(creator)
for row in relations:
print row