Python pcoa_biplot Examples

Programming Language: Python

Namespace/Package Name: q2_diversity

Method/Function: pcoa_biplot

Examples at hotexamples.com: 2

Python pcoa_biplot - 2 examples found. These are the top rated real world Python examples of q2_diversity.pcoa_biplot extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: test_ordination.py Project: jakereps/q2-diversity

    def test_pcoa_biplot(self):
        features = pd.DataFrame([[1, 0], [3, 0.1], [8, -0.4]],
                                index=['S1', 'S2', 'S3'],
                                columns=['positive', 'neither'])

        expected = skbio.stats.ordination.pcoa_biplot(self.ordination,
                                                      features)
        observed = pcoa_biplot(self.ordination, features)

        skbio.util.assert_ordination_results_equal(observed, expected,
                                                   ignore_directionality=True)

Example #2

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File: test_ordination.py Project: tkosciol/q2-diversity

    def test_pcoa_biplot(self):
        features = pd.DataFrame([[1, 0], [3, 0.1], [8, -0.4]],
                                index=['S1', 'S2', 'S3'],
                                columns=['positive', 'neither'])

        expected = skbio.stats.ordination.pcoa_biplot(self.ordination,
                                                      features)
        observed = pcoa_biplot(self.ordination, features)

        skbio.util.assert_ordination_results_equal(observed, expected,
                                                   ignore_directionality=True)