Python filter_table Examples

Example #1

 def test_tree_filter_table_none(self):
     rooted_nwk = io.StringIO("(O1:4.5,(O2:4,(a:1,b:1):2):0.5);")
     tree = skbio.TreeNode.read(rooted_nwk)
     table = Table(np.array([[0, 1, 3], [1, 1, 2]]), ['O1', 'O2'],
                   ['S1', 'S2', 'S3'])
     actual = filter_table(table, tree)
     expected = table.filter(['O1', 'O2'], axis='observation')
     self.assertEqual(actual, expected)

Example #2

File: test_filter.py Project: gregcaporaso/q2-phylogeny

 def test_tree_filter_table_none(self):
     rooted_nwk = io.StringIO("(O1:4.5,(O2:4,(a:1,b:1):2):0.5);")
     tree = skbio.TreeNode.read(rooted_nwk)
     table = Table(np.array([[0, 1, 3], [1, 1, 2]]),
                   ['O1', 'O2'],
                   ['S1', 'S2', 'S3'])
     actual = filter_table(table, tree)
     expected = table.filter(['O1', 'O2'], axis='observation')
     self.assertEqual(actual, expected)