def main():
# parse command line
option_parser, opts, args = parse_command_line_parameters(**script_info)
# ensure metadata is present and real-valued
validate_metadata(opts.map_fp, opts.gradient_variable)
# run detrending
detrend_pcoa(opts.input_fp,
map_fp=opts.map_fp,
gradient_variable=opts.gradient_variable,
suppress_prerotate=opts.suppress_prerotate,
output_dir=opts.output_dir)
def main():
# parse command line
option_parser, opts, args = parse_command_line_parameters(**script_info)
# can't pass map without column header
if opts.map_fp is not None and opts.gradient_variable is None:
option_parser.error("Cannot pass -m/--map_fp without -c/--gradient_variable.")
# ensure metadata is present and real-valued
if opts.map_fp is not None:
validate_metadata(opts.map_fp, opts.gradient_variable)
# run detrending
detrend_pcoa(opts.input_fp,
map_fp=opts.map_fp,
gradient_variable=opts.gradient_variable,
suppress_prerotate=opts.suppress_prerotate,
output_dir=opts.output_dir)
def main():
# parse command line
option_parser, opts, args = parse_command_line_parameters(**script_info)
# can't pass map without column header
if opts.map_fp is not None and opts.gradient_variable is None:
option_parser.error("Cannot pass -m/--map_fp without -c/--gradient_variable.")
# ensure metadata is present and real-valued
if opts.map_fp is not None:
validate_metadata(opts.map_fp, opts.gradient_variable)
# run detrending
detrend_pcoa(opts.input_fp,
map_fp=opts.map_fp,
gradient_variable=opts.gradient_variable,
suppress_prerotate=opts.suppress_prerotate,
output_dir=opts.output_dir)
