Python format_nmds_coords Examples

Programming Language: Python

Namespace/Package Name: qiime.format

Method/Function: format_nmds_coords

Examples at hotexamples.com: 2

Python format_nmds_coords - 2 examples found. These are the top rated real world Python examples of qiime.format.format_nmds_coords extracted from open source projects. You can rate examples to help us improve the quality of examples.

Example #1

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File: nmds.py Project: DDomogala3/qiime

def nmds(file,dimensions=2):
    samples, distmtx = parse_distmat(file)
    nmds_res = nmds_module.NMDS(distmtx,verbosity=0,dimension=dimensions)
    pts = nmds_res.getPoints()
    stress = nmds_res.getStress()
    
    return format_nmds_coords(samples, pts, stress)

Example #2

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File: nmds.py Project: TankMermaid/qiime-1

def nmds(file, dimensions=2):
    samples, distmtx = parse_distmat(file)
    nmds_res = nmds_module.NMDS(distmtx, verbosity=0, dimension=dimensions)
    pts = nmds_res.getPoints()
    stress = nmds_res.getStress()

    return format_nmds_coords(samples, pts, stress)